BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0027.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I7I0.1 B8I7I0_CLOCE Putative uncharacterized protein 103 3e-20 B3K404.1 B3K404_9BACI Copper amine oxidase domain protein 100 2e-19 B1V1R4.1 B1V1R4_CLOPE Putative uncharacterized protein 93 5e-17 Q0TSF9.1 Q0TSF9_CLOP1 Putative uncharacterized protein 92 6e-17 B1RD04.1 B1RD04_CLOPE Putative uncharacterized protein 92 6e-17 >B8I7I0.1 B8I7I0_CLOCE Putative uncharacterized protein Length = 272 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 7/212 (3%) Query: 152 DVSTSVRVLKEPLAIAAGSSGKAKLYTARKQGSTYKGFMLEVNGRKHSFNWESPRLVSYP 211 +++ V + P +++ S AKLY +++ Y F+LEV G + F+W + +Y Sbjct: 65 ELNKEVNNISNPKPLSSLSEADAKLYPFQQKDGVYYEFILEVKGNRKYFDWINVINPTYR 124 Query: 212 PELHYADVDDDGKPEAIVILSLGTGTGISQEELHVVKPEVWKELAVPTAEKAASAAVSSR 271 P+L Y DV++DGK E I+IL+ G GTG+ E++H++ P E + T + V ++ Sbjct: 125 PQLLYNDVNNDGKKELIIILTTGYGTGVHIEKIHIINPNTLTEFDIETPDDIIKNNVKTK 184 Query: 272 ITLDNSDVVVRLELAGAAPSKVTLRLPGRAGDGGLDHFGTEAGIGAVTHYKVVNGKLKAE 331 IT D ++V +++ + + + + + F A + HY+V+N KL Sbjct: 185 ITSDENNVKIQITIGSKETTII------KKKSDAIYWFDNVAFRNS-YHYEVINNKLMIR 237 Query: 332 TSVNAGIGESMGTLMLDYKAGNGGMVLDTIRF 363 G S+G + Y NG + TI F Sbjct: 238 ILAQVSPGGSIGEIQATYVFDNGKYIAKTINF 269 >B3K404.1 B3K404_9BACI Copper amine oxidase domain protein Length = 358 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 157/348 (45%), Gaps = 32/348 (9%) Query: 34 LSVDGQSVLPKLRPFYSGELLYVPARALLEYY-PVELKWDNAHKKLSLTTNSSRSVLSPG 92 L+V+ + P ++P + VP + EY P+ L+WDN +K L++ T + + L G Sbjct: 38 LNVNHYVMTPDVKPVIVNGTVLVPLNTVKEYLKPMGLRWDNKNKTLTVNTGTDQVTLKMG 97 Query: 93 SSAMQVQYTQTDGGYVDKLEGPVLLKEGHVYVSAGTVSLLTGAEAKPAASGNTVSITSGD 152 S + + + Y L P L +G V V A ++ L AE + V I + + Sbjct: 98 SDVAEGK----EKTYA--LSVPAQLMDGRVMVPARFMTELYDAEVRLDTKDGMVYIYTPE 151 Query: 153 VSTSVRVLKEPLAIAAGSSGKAKLY--TARKQGSTYKGFMLEVNGRKHSF-NWESPRLVS 209 V + A + KLY +A K G Y+G ++EV GRK F +W + Sbjct: 152 VD----------LLTAEENSNVKLYPVSASKYGR-YEGMVVEVEGRKRVFKDWHGGE-AT 199 Query: 210 YPPELHYADVDDDGKPEAIVILSLGTGTGISQEELHVVKPEVWKELAVPTAEKAASAAVS 269 P +HY DV DGKP+ +V GTGTG+ E+HVV +E+ + + E+A S+ V Sbjct: 200 RKPVIHYQDVTGDGKPDVVVFYVDGTGTGLYAGEMHVVDAGSLEEIPIESLEQAVSSHVK 259 Query: 270 SRITLDNSDVVVRLELAGAAPSKVTLRLPGRAGDGGLDHFGTEAGIGAVTHYKVVNGKLK 329 S I + V++ + G + + + D + + G GAV +++ G+L Sbjct: 260 SSIEKEADHFTVKVTVDGKESVQ---KFKDDSKDKS--YLFDKLGFGAVVRHRLAEGRLL 314 Query: 330 AETSVNAGIGESMGTLMLDYKAGNGGMVLDTIRFQPHDTTEQYVEKEQ 377 E + + G L + Y+ + RF+ D + +E+ + Sbjct: 315 TEAAGSMSPAGFAGDLRITYRFNE-----ELNRFEVDDMEYRRLEERE 357 >B1V1R4.1 B1V1R4_CLOPE Putative uncharacterized protein Length = 248 Score = 92.8 bits (229), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 184 STYKGFMLEVNGRKHSFNWESPRLVSYPPELHYADVDDDGKPEAIVILSLGTGTGISQEE 243 S Y+ +L V G+K FNW +S+ PEL D+++DGK E ++I++ G GTGI+ +E Sbjct: 60 SVYEDILLNVKGKKKRFNWIVDSGLSFRPELILTDINNDGKKELVIIITTGHGTGINTQE 119 Query: 244 LHVVKPEVWKELAVPTAEKAASAAVSSRITLDNSDVVVRLELAGAAPSKVTLRLPGRAGD 303 +H+ K E +E+ V S V +++ D + V V + + G + +L D Sbjct: 120 VHIFKEETLEEIKVQNPFDIISKNVKTKVYKDENSVKVYININGKESVISSKKLNELYND 179 Query: 304 -GGLDHFGTEAGIGAVTHYKVVNGKLKAETSVNAGIGESMGTLMLDYKAGNGGMVLDTIR 362 +FG Y+V N KLKA + + + ++YK + +V+D I Sbjct: 180 QNNKKNFGDTLFFRDFLIYEVYNEKLKAIVGGDIFFWNYLVNIKIEYKFESNMLVVDKIY 239 Query: 363 FQPHDTTEQY 372 F D TE + Sbjct: 240 F---DVTEYF 246 >Q0TSF9.1 Q0TSF9_CLOP1 Putative uncharacterized protein Length = 248 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 184 STYKGFMLEVNGRKHSFNWESPRLVSYPPELHYADVDDDGKPEAIVILSLGTGTGISQEE 243 S Y+ +L V G+K FNW +S+ PEL D+++DGK E ++I++ G GTGI+ +E Sbjct: 60 SVYEDILLNVKGKKKRFNWIVDSGLSFRPELILTDINNDGKKELVIIITTGHGTGINTQE 119 Query: 244 LHVVKPEVWKELAVPTAEKAASAAVSSRITLDNSDVVVRLELAGAAPSKVTLRLPGRAGD 303 +H+ K E +E+ V S V +++ D + V V + + G + +L D Sbjct: 120 VHIFKEETLEEIKVQNPFDIISKNVKTKVYKDENSVKVYININGKESVISSKKLNELYND 179 Query: 304 -GGLDHFGTEAGIGAVTHYKVVNGKLKAETSVNAGIGESMGTLMLDYKAGNGGMVLDTIR 362 +FG Y+V N KLKA + + + ++YK + +V+D I Sbjct: 180 QNNKKNFGDTLFFRDFLIYEVYNEKLKAIVGGDIFFWNYLVNIKIEYKFESNMLVVDKIY 239 Query: 363 FQPHDTTEQY 372 F D TE + Sbjct: 240 F---DVTEYF 246 >B1RD04.1 B1RD04_CLOPE Putative uncharacterized protein Length = 248 Score = 92.4 bits (228), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 4/190 (2%) Query: 184 STYKGFMLEVNGRKHSFNWESPRLVSYPPELHYADVDDDGKPEAIVILSLGTGTGISQEE 243 S Y+ +L V G+K FNW +S+ PEL D+++DGK E ++I++ G GTGI+ +E Sbjct: 60 SVYEDILLNVKGKKKRFNWIVDSGLSFRPELILTDINNDGKKELVIIITTGHGTGINTQE 119 Query: 244 LHVVKPEVWKELAVPTAEKAASAAVSSRITLDNSDVVVRLELAGAAPSKVTLRLPGRAGD 303 +H+ K E +E+ V S V +++ D + V V + + G + +L D Sbjct: 120 VHIFKEETLEEIKVQNPFDIISKNVKTKVYKDENSVKVYININGKESVISSKKLNELYND 179 Query: 304 -GGLDHFGTEAGIGAVTHYKVVNGKLKAETSVNAGIGESMGTLMLDYKAGNGGMVLDTIR 362 +FG Y+V N KLKA + + + ++YK + +V+D I Sbjct: 180 QNNKKNFGDTLFFRDFLIYEVYNEKLKAIVGGDIFFWNYLVNIKIEYKFESNMLVVDKIY 239 Query: 363 FQPHDTTEQY 372 F D TE + Sbjct: 240 F---DVTEYF 246 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.129 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,183,313,232 Number of extensions: 94555798 Number of successful extensions: 196430 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 196429 Number of HSP's successfully gapped: 11 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)