BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0023.p (252 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U7D4.1 A9U7D4_PHYPA Predicted protein 166 2e-39 B7JLH6.1 B7JLH6_BACC0 Putative uncharacterized protein 116 1e-24 Q81RD4.1 Q81RD4_BACAN Putative uncharacterized protein 116 1e-24 C3P866.1 C3P866_BACAA Putative uncharacterized protein 116 1e-24 C3LKI8.1 C3LKI8_BACAC Putative uncharacterized protein 116 1e-24 >A9U7D4.1 A9U7D4_PHYPA Predicted protein Length = 319 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 128/212 (60%), Gaps = 3/212 (1%) Query: 39 RRMKKWLIATILAASLVIPAGAYAGYHYLSDSMYGSQDNFVQNGGTLEQYEQVEAKLQQA 98 R KKWL+ +LA L++P GAYAGY YL+D +YGSQ+N GGT E Y ++E KLQ A Sbjct: 12 RNRKKWLVTGLLAVVLIVPTGAYAGYTYLADGIYGSQENIAAMGGTAEDYLRLETKLQTA 71 Query: 99 KQSLSEEDFNTMISLLHKLGSFNLQIADASGMLHPEKLSAKDRERYNRLGAELEPYFSKL 158 K SEE+F + LL ++G ++ AD+ G +HPE+ S ++ERY+ L ELEP+F KL Sbjct: 72 KTHFSEEEFVQYMDLLKQMGQMAVKYADSQGDMHPEQWSTVEQERYSLLVGELEPFFEKL 131 Query: 159 KNPKKPQQPVEQVDPDAFWDQQLAKAQKTFSGGELDEVQRLIGELKVLNAKVTDPDGSIH 218 + + +D FW +QL +A+KTF+ + E + + ++K V D DGSIH Sbjct: 132 EAVSVGSSK-KLMDDQQFWTEQLEQAEKTFTKEQYREFKSVYEQMKKYQVMVMDKDGSIH 190 Query: 219 MDRLTQADQSSQDRLIEELNPYLKKLGVQLKP 250 +RL+ + +L L PYLK+L +L P Sbjct: 191 EERLSAEQKDDLRQLERRLIPYLKRL--ELNP 220 >B7JLH6.1 B7JLH6_BACC0 Putative uncharacterized protein Length = 226 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 1 MSLEENLRRTLQAETEGWSAPPELKGKILDRIEPGKGGRRMKKWLIATILAASLVIPAGA 60 MSL+ +R ++Q E +G APPELK K++ +I+ +GGR+ KK LIA +LAA+ +IP Sbjct: 1 MSLDCRVRESIQEEAKGIVAPPELKEKVIVQIKMNQGGRKRKKRLIAGVLAAAFLIPTTG 60 Query: 61 YAGYHYLSDSMYGSQDNFVQNGG--TLEQYEQVEAKLQQAKQSLSEEDFNTMISLLHKLG 118 +A ++D +YGS +N ++ G TLE Y + AKL +AK + +++ L KL Sbjct: 61 FAYQSIMADGIYGSFENLKKHAGTMTLEAYMRFSAKLSEAKDEMGTKEYEVFTKELKKLT 120 Query: 119 SFNLQIADASGMLHPEKLSAKDRERYNRLGAELEPYFSKLKNPKKPQQPVEQVDPDAFWD 178 + L D++G + + LS++ RE ++ L+PYF KL K ++ + Q + D + + Sbjct: 121 NAKLAYGDSNGNIDYDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYME 180 >Q81RD4.1 Q81RD4_BACAN Putative uncharacterized protein Length = 226 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 1 MSLEENLRRTLQAETEGWSAPPELKGKILDRIEPGKGGRRMKKWLIATILAASLVIPAGA 60 MSL+ +R ++Q E +G APPELK K++ +I+ +GGR+ KK LIA +LAA+ +IP Sbjct: 1 MSLDCRVRESIQEEAKGIVAPPELKEKVIVQIKMNQGGRKRKKRLIAGVLAAAFLIPTTG 60 Query: 61 YAGYHYLSDSMYGSQDNFVQNGG--TLEQYEQVEAKLQQAKQSLSEEDFNTMISLLHKLG 118 +A ++D +YGS +N ++ G TLE Y + AKL +AK + +++ L KL Sbjct: 61 FAYQSIMADGIYGSFENLKKHAGTMTLEAYMRFSAKLSEAKDEMGTKEYEVFTKELKKLT 120 Query: 119 SFNLQIADASGMLHPEKLSAKDRERYNRLGAELEPYFSKLKNPKKPQQPVEQVDPDAFWD 178 + L D++G + + LS++ RE ++ L+PYF KL K ++ + Q + D + + Sbjct: 121 NAKLAYGDSNGNIDYDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYME 180 >C3P866.1 C3P866_BACAA Putative uncharacterized protein Length = 226 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 1 MSLEENLRRTLQAETEGWSAPPELKGKILDRIEPGKGGRRMKKWLIATILAASLVIPAGA 60 MSL+ +R ++Q E +G APPELK K++ +I+ +GGR+ KK LIA +LAA+ +IP Sbjct: 1 MSLDCRVRESIQEEAKGIVAPPELKEKVIVQIKMNQGGRKRKKRLIAGVLAAAFLIPTTG 60 Query: 61 YAGYHYLSDSMYGSQDNFVQNGG--TLEQYEQVEAKLQQAKQSLSEEDFNTMISLLHKLG 118 +A ++D +YGS +N ++ G TLE Y + AKL +AK + +++ L KL Sbjct: 61 FAYQSIMADGIYGSFENLKKHAGTMTLEAYMRFSAKLSEAKDEMGTKEYEVFTKELKKLT 120 Query: 119 SFNLQIADASGMLHPEKLSAKDRERYNRLGAELEPYFSKLKNPKKPQQPVEQVDPDAFWD 178 + L D++G + + LS++ RE ++ L+PYF KL K ++ + Q + D + + Sbjct: 121 NAKLAYGDSNGNIDYDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYME 180 >C3LKI8.1 C3LKI8_BACAC Putative uncharacterized protein Length = 226 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 2/180 (1%) Query: 1 MSLEENLRRTLQAETEGWSAPPELKGKILDRIEPGKGGRRMKKWLIATILAASLVIPAGA 60 MSL+ +R ++Q E +G APPELK K++ +I+ +GGR+ KK LIA +LAA+ +IP Sbjct: 1 MSLDCRVRESIQEEAKGIVAPPELKEKVIVQIKMNQGGRKRKKRLIAGVLAAAFLIPTTG 60 Query: 61 YAGYHYLSDSMYGSQDNFVQNGG--TLEQYEQVEAKLQQAKQSLSEEDFNTMISLLHKLG 118 +A ++D +YGS +N ++ G TLE Y + AKL +AK + +++ L KL Sbjct: 61 FAYQSIMADGIYGSFENLKKHAGTMTLEAYMRFSAKLSEAKDEMGTKEYEVFTKELKKLT 120 Query: 119 SFNLQIADASGMLHPEKLSAKDRERYNRLGAELEPYFSKLKNPKKPQQPVEQVDPDAFWD 178 + L D++G + + LS++ RE ++ L+PYF KL K ++ + Q + D + + Sbjct: 121 NAKLAYGDSNGNIDYDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYME 180 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.131 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,533,037,253 Number of extensions: 62528343 Number of successful extensions: 174815 Number of sequences better than 1.0e-05: 70 Number of HSP's gapped: 174756 Number of HSP's successfully gapped: 70 Length of query: 252 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 120 Effective length of database: 1,817,122,223 Effective search space: 218054666760 Effective search space used: 218054666760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 129 (54.3 bits)