BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0018.p
         (87 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O65998.1 O65998_CLOAB Orf36                                            60   4e-08
Q97IY0.1 Q97IY0_CLOAB Putative uncharacterized protein                 60   5e-08

>O65998.1 O65998_CLOAB Orf36
          Length = 316

 Score = 60.5 bits (145), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%)

Query: 2   NGKYLDLIFTSEKIGQKLSMQFRYSDEETAYEMSTSGKMEKVQVNGADAVMMDDRSLHWE 61
           N KY+ + F + K    + +Q R S EET Y M     ++K+++N  DAV+  + S+ WE
Sbjct: 231 NNKYITMYFKNPKNPNVMFLQERLSCEETKYTMGGEDDIKKIKINNVDAVLSGNESIDWE 290

Query: 62  ADGVLYAMNTCGLERSEVLKIAESIR 87
            +  LY++   G+  +E+ KIAESI+
Sbjct: 291 YNKSLYSLILKGISVNELEKIAESIK 316


>Q97IY0.1 Q97IY0_CLOAB Putative uncharacterized protein
          Length = 316

 Score = 60.5 bits (145), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 51/86 (59%)

Query: 2   NGKYLDLIFTSEKIGQKLSMQFRYSDEETAYEMSTSGKMEKVQVNGADAVMMDDRSLHWE 61
           N KY+ + F + K    + +Q R S EET Y M     ++K+++N  DAV+  + S+ WE
Sbjct: 231 NNKYITMYFKNPKNPNVMFLQERLSCEETKYTMGGEDDIKKIKINNVDAVLSGNESIDWE 290

Query: 62  ADGVLYAMNTCGLERSEVLKIAESIR 87
            +  LY++   G+  +E+ KIAESI+
Sbjct: 291 YNKSLYSLILKGISVNELEKIAESIK 316


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.129    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 444,323,753
Number of extensions: 13836607
Number of successful extensions: 29283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 29283
Number of HSP's successfully gapped: 2
Length of query: 87
Length of database: 3,060,696,203
Length adjustment: 57
Effective length of query: 30
Effective length of database: 2,523,698,348
Effective search space: 75710950440
Effective search space used: 75710950440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 125 (52.8 bits)