BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0014.p (361 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KE13.1 B3KE13_9BACI Putative uncharacterized protein 503 e-141 B1DH87.1 B1DH87_9BACL Outer membrane lipoprotein-sorting protein... 340 9e-92 C0ZK20.1 C0ZK20_BREBN Putative uncharacterized protein ydcC 270 2e-70 C3FXG8.1 C3FXG8_BACTU Putative uncharacterized protein 254 1e-65 Q81VF7.1 Q81VF7_BACAN Lipoprotein, putative 253 1e-65 >B3KE13.1 B3KE13_9BACI Putative uncharacterized protein Length = 370 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 246/370 (66%), Positives = 298/370 (80%), Gaps = 9/370 (2%) Query: 1 MRRITWVL-AIIMSVALVLAGCGKKDAASVVKDLNNVSDKLESKQGAYQGSGTMTLYTGE 59 MRRI+WVL A+++ + +LAGCGKK+A SVVKDL V+DKLES +GAYQG+G MT++TG Sbjct: 1 MRRISWVLLAVVLCLTTILAGCGKKNADSVVKDLGKVADKLESAKGAYQGAGVMTIHTGS 60 Query: 60 QPQEYKVEVWYKNPSYYRISLSNVQKDVTQIVLRNDEGVFVLTPSLGKSFRFQSDWPDNQ 119 PQEY+VEVWY++PSYYRISL+N QKD+TQIVLRND+GVFVLTPSL KSFRF+SDWPDNQ Sbjct: 61 APQEYQVEVWYQSPSYYRISLTNGQKDITQIVLRNDDGVFVLTPSLNKSFRFKSDWPDNQ 120 Query: 120 GQVYLYQTLLRGIVSDNNRQFAEDGDNYVFEVAANYQSSALVRQKIWLAKKTYEPKQVQV 179 GQVYLYQTLL I+SDN RQFAED D+YVF+VAANY S +L+RQKIWLAK Y PKQVQV Sbjct: 121 GQVYLYQTLLSSILSDNTRQFAEDKDSYVFDVAANYHSHSLIRQKIWLAKDNYTPKQVQV 180 Query: 180 SDSEAKVVVNVKFDSFKFDPEFTKDSFDMQKNMATGSASESTLAEVDENGNPVAAPE--N 237 SDSEA VVV VKF++F FD TKDSFD KN++ + ++ T+AEVDENG PVA+ N Sbjct: 181 SDSEANVVVEVKFNTFTFDTNLTKDSFDTNKNLSAMNDAKGTIAEVDENGVPVASTTEGN 240 Query: 238 ARQ--EGQTAAAEPGD---FGIIEPGYIPAGVQLKDSNKLEDSKDHSVLLRYDGTYQYTI 292 Q EG T A GD FGII P Y+PAGV KD+ ++ +SKDH+V+L+YDG YQYTI Sbjct: 241 GAQGTEGMTETAAGGDMGSFGIIYPEYVPAGVTNKDTMEVPESKDHAVILKYDGVYQYTI 300 Query: 293 IESRPLDRAVSLAPATLIDLGF-TAGALTGDEQKTLTWMSDGVQYRITSANLPVNEMMQI 351 +ESRP DRAVSL P + + F T G LTGD+Q+TLTW S+GV+YRITSANLPV EM ++ Sbjct: 301 MESRPSDRAVSLVPGEAVYIDFTTVGLLTGDQQRTLTWSSEGVEYRITSANLPVEEMKKV 360 Query: 352 AASMEEQSGK 361 AASM+ +SGK Sbjct: 361 AASMQGESGK 370 >B1DH87.1 B1DH87_9BACL Outer membrane lipoprotein-sorting protein-like protein Length = 409 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 187/413 (45%), Positives = 258/413 (62%), Gaps = 56/413 (13%) Query: 1 MRRITWVLAIIMSVALVLAGCGKKDAASVVKDLNNVSDKLESKQGAYQGSGTMTLYTGEQ 60 MRR+TW AI++ +LVL+ CGKKDA SVVK+L+ V + +ES YQG+GTM L+TG+Q Sbjct: 1 MRRMTWAAAILLVFSLVLSACGKKDAESVVKELDKVVNNMES----YQGTGTMKLHTGQQ 56 Query: 61 PQEYKVEVWYKNPSYYRISLSNVQKDVTQIVLRNDEGVFVLTPSLGKSFRFQSDWPDNQG 120 Y VEV Y+ P YYRI L+N +KD+TQIVLRND+GVFVLTP L K FRFQSDWP NQG Sbjct: 57 ELTYNVEVSYQKPHYYRIKLTNAEKDITQIVLRNDDGVFVLTPRLNKVFRFQSDWPQNQG 116 Query: 121 QVYLYQTLLRGIVSDNNRQFAEDGDNYVFEVAANYQSSALVRQKIWLAKKTYEPKQVQVS 180 QVYLYQTL++ I++DN+RQFA D +YVF+V ANY + L RQKIWL K Y+P QVQVS Sbjct: 117 QVYLYQTLIQSILTDNSRQFAVDDKSYVFDVMANYNNGTLARQKIWLNKSDYKPVQVQVS 176 Query: 181 DSEAKVVVNVKFDSFKFDPEFTKDSFDMQKNM-----ATGSASESTLAEVDE---NGNPV 232 D+ A V+V V F SF+F P F K +F+ + NM ++G++ + TLA+ D+ NG+ Sbjct: 177 DANASVMVQVDFTSFEFGPSFDKTTFETEANMKSSPSSSGTSEQPTLADPDQTDMNGSAN 236 Query: 233 AAPENARQ----------------EGQTA---------------------------AAEP 249 E+++ +G+T A Sbjct: 237 GTSEDSKDAVTPDKSTDSKDDSKADGKTDDKATKDDDKNAAAEDEEDADDTAANPQADAA 296 Query: 250 GDFGIIEPGYIPAGVQLKDSNKLEDSKDHSVLLRYDGTYQYTIIESRPLDRAVSLAPATL 309 + ++ P +P GV +KDS + V+ RY GTY +++I+++P D A + + + Sbjct: 297 TNLQVMVPTDLPEGVVMKDSMDIVFGGLPGVVSRYTGTYDFSLIQTQPKDMAATYSGGSF 356 Query: 310 IDLGFTAGALT-GDEQKTLTWMSDGVQYRITSANLPVNEMMQIAASMEEQSGK 361 +DLGFT G LT GD+QKTLTW+ DG + R+TS+ LP EM++IA S++ S K Sbjct: 357 LDLGFTIGELTGGDDQKTLTWIVDGTELRLTSSTLPETEMIRIAQSVQVDSTK 409 >C0ZK20.1 C0ZK20_BREBN Putative uncharacterized protein ydcC Length = 345 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 146/365 (40%), Positives = 208/365 (56%), Gaps = 24/365 (6%) Query: 1 MRRITWVLAIIMSVALVLAGC-GKKDAASVVKDLNNVSDKLESKQGAYQGSGTMTLYTGE 59 M+R+ L +++ L L GC G+K VV DLN K+ Y+ +T+ TG Sbjct: 1 MKRVALPLVLLLVFTLFLGGCFGQKTPEDVVSDLNGALGKMT----GYKSQAVLTMQTGS 56 Query: 60 QPQEYKVEVWYKNPSYYRISLSNVQKDVTQIVLRNDEGVFVLTPSLGKSFRFQSDWPDNQ 119 P EY V+VWY+ P+ YR++L++ Q+ +TQI+LRN+EGVFVLTP L KSFRFQS WP+N Sbjct: 57 TPMEYDVQVWYEKPTNYRVALTSKQRGITQIILRNNEGVFVLTPHLNKSFRFQSGWPENN 116 Query: 120 GQVYLYQTLLRGIVSDNNRQFAEDGDNYVFEVAANYQSS-ALVRQKIWLAKKTYEPKQVQ 178 G +YLY+TL + I+ D RQ + YVFEV ANY + +L +QKIWL + ++P + Sbjct: 117 GPLYLYETLAKSIIDDTERQMKMEEKQYVFEVKANYSGNRSLTKQKIWLTED-FKPTHAE 175 Query: 179 VSDSEAKVVVNVKFDSFKFDPEFTKDSFDMQKNMATGSASESTLAEVDENGNPVAAPENA 238 + D+ +V + F F F+P F KD+FD ++NM T S + P A Sbjct: 176 IMDASMNPLVRIDFTDFSFNPMFDKDAFDKERNMTTSSLT--------------TIPTMA 221 Query: 239 RQEGQTAAAEPGDFGIIEPGYIPAGVQLKDSNKLEDSKDHSVLLRYDGTYQYTIIESRPL 298 + GQ FG+I P Y+P GV+ D + + V+L Y GTY Y +IE RP Sbjct: 222 QTNGQVVKQPNSQFGVIVPTYMPEGVKQGDIEPVTRDGERKVILTYKGTYNYKVIEGRPT 281 Query: 299 DRAVSLAPATLIDLGFTAGAL--TGDEQKTLTWMSDGVQYRITSANLPVNEMMQIAASME 356 +VS ++LGFT G L TG+ Q+ LTW DG++Y I + +LP EM+ +A S Sbjct: 282 AASVSYEQGMPVNLGFTVGVLAQTGENQRLLTWELDGIEYTI-AGDLPEEEMVNVAQSTY 340 Query: 357 EQSGK 361 S K Sbjct: 341 GLSAK 345 >C3FXG8.1 C3FXG8_BACTU Putative uncharacterized protein Length = 357 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 213/367 (58%), Gaps = 39/367 (10%) Query: 2 RRITWVLAIIMSVALVLAGCGKKDAASVVKDLNNVSDKLESKQGAYQGSGTMTLYTGEQP 61 RR+ VL +++V VLAGC +K VV+DL L+S YQ +++ TG +P Sbjct: 23 RRLFLVLVGLLTV-FVLAGCMEKKQDDVVRDLETKVKGLKS----YQAEAKLSIKTGNEP 77 Query: 62 QEYKVEVWYKNPSYYRISLSNVQKDVTQIVLRNDEGVFVLTPSLGKSFRFQSDWPDNQGQ 121 QEYKVE+W+K PS+YR++L N +KD +QI+LRN+EGVFVLTP+L KSFRFQSDWP N Q Sbjct: 78 QEYKVEIWHKEPSFYRVNLQNAKKDQSQIILRNEEGVFVLTPALNKSFRFQSDWPQNSSQ 137 Query: 122 VYLYQTLLRGIVSD-NNRQFAEDGDNYVFEVAANYQS-SALVRQKIWLAKKTYEPKQVQV 179 YLY++L+R I+ D N F + +Y+F+ NYQ + L RQ+I L K P V++ Sbjct: 138 AYLYESLVRDILQDKKNLTFEKTDKHYIFKTKTNYQHQNMLPRQEITLKKSDLTPVSVKL 197 Query: 180 SDSEAKVVVNVKFDSFKFDPEFTKDSFDMQKNMATGSASESTLAEVDENGNPVAAPENAR 239 D++ V+V V F KFD +F K +FD ++NM+ A+VD Sbjct: 198 MDNDQNVLVKVDFSKVKFDAKFDKGAFDTKQNMSR--------AQVD------------- 236 Query: 240 QEGQTAAAEPGDFGIIEPGYIPAGVQLKDSNKLEDSKDHSVLLRYDGTYQ-YTIIESRP- 297 QT A E F I+ P P G+ LKD +L+ +L Y G+ + +T+I+ + Sbjct: 237 --VQTTAKEDKPFAILYPRDTPQGMTLKDEKELKTDSGKRAILTYTGSKKSFTLIQEKAK 294 Query: 298 ---LDRAVSLAPATLIDLGFTAGALTGDEQKTLTWMSDGVQYRITSANLPVNEMMQIAAS 354 A+S++ L+DLGFT GALT D +LTW +GV+Y + S L E++ +A S Sbjct: 295 VAEASSAISVS-GELVDLGFTIGALTKD---SLTWSHNGVEYMLVSKGLEPKELLMVARS 350 Query: 355 MEEQSGK 361 + E+ K Sbjct: 351 VTEKQVK 357 >Q81VF7.1 Q81VF7_BACAN Lipoprotein, putative Length = 337 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 213/367 (58%), Gaps = 39/367 (10%) Query: 2 RRITWVLAIIMSVALVLAGCGKKDAASVVKDLNNVSDKLESKQGAYQGSGTMTLYTGEQP 61 RR+ VL +++V VLAGC +K VV+DL L+S YQ +++ TG +P Sbjct: 3 RRLFLVLVGLLTV-FVLAGCMEKKQDDVVRDLEAKVKGLKS----YQAEAKLSIKTGNEP 57 Query: 62 QEYKVEVWYKNPSYYRISLSNVQKDVTQIVLRNDEGVFVLTPSLGKSFRFQSDWPDNQGQ 121 QEYKVE+W+K PS+YR++L N +KD +QI+LRN+EGVFVLTP+L KSFRFQSDWP N Q Sbjct: 58 QEYKVEIWHKEPSFYRVNLQNAKKDQSQIILRNEEGVFVLTPALNKSFRFQSDWPQNSSQ 117 Query: 122 VYLYQTLLRGIVSD-NNRQFAEDGDNYVFEVAANYQS-SALVRQKIWLAKKTYEPKQVQV 179 YLY++L+R I+ D N F + +Y+F+ NYQ + L RQ+I L K P V++ Sbjct: 118 AYLYESLVRDILQDKKNLTFEKTDKHYIFKTKTNYQHQNMLPRQEITLKKSDLTPVSVKL 177 Query: 180 SDSEAKVVVNVKFDSFKFDPEFTKDSFDMQKNMATGSASESTLAEVDENGNPVAAPENAR 239 D++ V+V V F KFD +F K +FD ++NM+ A+VD Sbjct: 178 MDNDQNVLVKVDFSKVKFDAKFDKGAFDTKQNMSR--------AQVD------------- 216 Query: 240 QEGQTAAAEPGDFGIIEPGYIPAGVQLKDSNKLEDSKDHSVLLRYDGTYQ-YTIIESRP- 297 QT A E F I+ P P G+ LKD +L+ +L Y G+ + +T+I+ + Sbjct: 217 --VQTTAKEDKPFAILYPRDTPQGMTLKDEKELKTDSGKRAILTYTGSKKSFTLIQEKAK 274 Query: 298 ---LDRAVSLAPATLIDLGFTAGALTGDEQKTLTWMSDGVQYRITSANLPVNEMMQIAAS 354 A+S++ L+DLGFT GALT D +LTW +GV+Y + S L E++ +A S Sbjct: 275 VAEASSAISVS-GELVDLGFTIGALTKD---SLTWSHNGVEYMLVSKGLEPKELLMVARS 330 Query: 355 MEEQSGK 361 + E+ K Sbjct: 331 VTEKQVK 337 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,135,269,816 Number of extensions: 91086350 Number of successful extensions: 196176 Number of sequences better than 1.0e-05: 107 Number of HSP's gapped: 195753 Number of HSP's successfully gapped: 108 Length of query: 361 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 224 Effective length of database: 1,770,017,148 Effective search space: 396483841152 Effective search space used: 396483841152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)