BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0012.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE11.1 B3KE11_9BACI CopG domain protein DNA-binding domain pro...   164   3e-39
B1DH89.1 B1DH89_9BACL Putative transcriptional regulator, CopG f...   151   2e-35
C0ZK25.1 C0ZK25_BREBN Antitoxin EndoAI                                145   9e-34
Q2B506.1 Q2B506_9BACI Putative uncharacterized protein                114   2e-24
B7GFP6.1 B7GFP6_ANOFW Transcriptional regulator, CopG family          114   2e-24

>B3KE11.1 B3KE11_9BACI CopG domain protein DNA-binding domain protein
          Length = 90

 Score =  164 bits (414), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/90 (88%), Positives = 85/90 (94%)

Query: 23  LQNTKRIMISLPDHLLQEVDGIVQLENSNRSELIRQAMKLYLSERRKRTIRDSMQRGYME 82
           +QNTKRIMISLPDHLLQEVDGI QLENSNRSELIRQAMKLYL+ER+KR IR+SMQRGYME
Sbjct: 1   MQNTKRIMISLPDHLLQEVDGIAQLENSNRSELIRQAMKLYLNERKKRYIRESMQRGYME 60

Query: 83  MAKINLTMACEAFLAEEDADSTLGRLVSGV 112
           MAKINLTMA EAF AEEDAD+TL RLVSGV
Sbjct: 61  MAKINLTMASEAFHAEEDADNTLDRLVSGV 90


>B1DH89.1 B1DH89_9BACL Putative transcriptional regulator, CopG family
          Length = 90

 Score =  151 bits (382), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 80/90 (88%)

Query: 23  LQNTKRIMISLPDHLLQEVDGIVQLENSNRSELIRQAMKLYLSERRKRTIRDSMQRGYME 82
           +QNTKRIMISLPD LL+EVDGIV  ENSNRSE IRQAMKLYL ER+KR IR+SMQRGY+E
Sbjct: 1   MQNTKRIMISLPDQLLEEVDGIVAKENSNRSEFIRQAMKLYLVERKKRQIRESMQRGYLE 60

Query: 83  MAKINLTMACEAFLAEEDADSTLGRLVSGV 112
           MAKINL MA EAF AEE+AD TLGRLVSGV
Sbjct: 61  MAKINLNMASEAFQAEEEADHTLGRLVSGV 90


>C0ZK25.1 C0ZK25_BREBN Antitoxin EndoAI
          Length = 99

 Score =  145 bits (367), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 77/88 (87%)

Query: 25  NTKRIMISLPDHLLQEVDGIVQLENSNRSELIRQAMKLYLSERRKRTIRDSMQRGYMEMA 84
           NTKRIMISLP HLLQEVDG++Q E SNRSE IRQAM LYL ER+KRTIR++MQ+GYMEMA
Sbjct: 12  NTKRIMISLPQHLLQEVDGVIQKEKSNRSEFIRQAMHLYLKERKKRTIRETMQKGYMEMA 71

Query: 85  KINLTMACEAFLAEEDADSTLGRLVSGV 112
           KINL MA EAF AEE+AD TL RLVSGV
Sbjct: 72  KINLNMASEAFGAEEEADHTLVRLVSGV 99


>Q2B506.1 Q2B506_9BACI Putative uncharacterized protein
          Length = 93

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 26  TKRIMISLPDHLLQEVDGIVQLENSNRSELIRQAMKLYLSERRKRTIRDSMQRGYMEMAK 85
           T  IM+ LP HLL E++  V+ EN NRSE I QA K+YL ER+KR IR+SM+RGYMEMAK
Sbjct: 7   TTEIMVKLPQHLLTELESFVKQENVNRSEFIYQATKMYLRERKKRQIRESMRRGYMEMAK 66

Query: 86  INLTMACEAFLAEEDADSTLGRLVSG 111
           INLT+A EAF AE +A+ T+ RLVSG
Sbjct: 67  INLTIASEAFQAEYEAEHTVERLVSG 92


>B7GFP6.1 B7GFP6_ANOFW Transcriptional regulator, CopG family
          Length = 95

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/92 (60%), Positives = 73/92 (79%)

Query: 20  VANLQNTKRIMISLPDHLLQEVDGIVQLENSNRSELIRQAMKLYLSERRKRTIRDSMQRG 79
           V+    T  I+I LP  L+ E+DGIV+ EN +R+ELI QAMK+Y+ ER+KR IR++M+RG
Sbjct: 3   VSESSATTEIVIRLPQALVSELDGIVKQENGSRNELIYQAMKMYIRERKKRQIREAMRRG 62

Query: 80  YMEMAKINLTMACEAFLAEEDADSTLGRLVSG 111
           YMEMAKINL++A EAFLAE +AD T+ RLVSG
Sbjct: 63  YMEMAKINLSLASEAFLAEYEADHTVERLVSG 94


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 527,709,175
Number of extensions: 16179241
Number of successful extensions: 56697
Number of sequences better than 1.0e-05: 138
Number of HSP's gapped: 56632
Number of HSP's successfully gapped: 138
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)