BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0011.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KE10.1 B3KE10_9BACI PemK family protein                             191   1e-47
B1DH90.1 B1DH90_9BACL Transcriptional modulator of MazE/toxin, MazF   187   2e-46
C0ZK26.1 C0ZK26_BREBN Endoribonuclease EndoA                          184   2e-45
Q5L3G2.1 Q5L3G2_GEOKA Hypothetical conserved protein                  182   6e-45
B7GFP7.1 B7GFP7_ANOFW Toxin-antitoxin addiction module toxin com...   182   6e-45

>B3KE10.1 B3KE10_9BACI PemK family protein
          Length = 116

 Score =  191 bits (486), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 96/101 (95%), Positives = 98/101 (97%)

Query: 1   VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAAAHGFDRDSVI 60
           VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAA+HGFDRDSVI
Sbjct: 16  VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAASHGFDRDSVI 75

Query: 61  LLEQVRTIDKQRLTDKITHLDDETMKLVDDSLQISLGLIDF 101
           LLEQ+RTIDKQRLTDKITHLDDE M  VDDSLQISLGLIDF
Sbjct: 76  LLEQIRTIDKQRLTDKITHLDDEMMSKVDDSLQISLGLIDF 116


>B1DH90.1 B1DH90_9BACL Transcriptional modulator of MazE/toxin, MazF
          Length = 116

 Score =  187 bits (475), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 92/101 (91%), Positives = 99/101 (98%)

Query: 1   VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAAAHGFDRDSVI 60
           VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVE++AAAHGFDRDSV+
Sbjct: 16  VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEMEAAAHGFDRDSVV 75

Query: 61  LLEQVRTIDKQRLTDKITHLDDETMKLVDDSLQISLGLIDF 101
           LLEQ+RTIDKQRLTDKITHLDDETM+ VDD+L IS+GLIDF
Sbjct: 76  LLEQIRTIDKQRLTDKITHLDDETMRKVDDALLISVGLIDF 116


>C0ZK26.1 C0ZK26_BREBN Endoribonuclease EndoA
          Length = 116

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/101 (91%), Positives = 96/101 (95%)

Query: 1   VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAAAHGFDRDSVI 60
           VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDA  +GFDRDSVI
Sbjct: 16  VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKTYGFDRDSVI 75

Query: 61  LLEQVRTIDKQRLTDKITHLDDETMKLVDDSLQISLGLIDF 101
           LLEQ+RTIDKQRLTDKITHLDDE M  V++SLQISLGLIDF
Sbjct: 76  LLEQIRTIDKQRLTDKITHLDDEMMDRVNESLQISLGLIDF 116


>Q5L3G2.1 Q5L3G2_GEOKA Hypothetical conserved protein
          Length = 116

 Score =  182 bits (463), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 96/101 (95%)

Query: 1   VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAAAHGFDRDSVI 60
           VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDA  +GF+RDSVI
Sbjct: 16  VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVI 75

Query: 61  LLEQVRTIDKQRLTDKITHLDDETMKLVDDSLQISLGLIDF 101
           LLEQ+RTIDKQRLTDKITHLDDE M  VD++LQISLGLIDF
Sbjct: 76  LLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISLGLIDF 116


>B7GFP7.1 B7GFP7_ANOFW Toxin-antitoxin addiction module toxin component MazF
           (An endoRNAse)
          Length = 116

 Score =  182 bits (463), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 91/101 (90%), Positives = 96/101 (95%)

Query: 1   VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAAAHGFDRDSVI 60
           VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDA  +GF+RDSVI
Sbjct: 16  VVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVI 75

Query: 61  LLEQVRTIDKQRLTDKITHLDDETMKLVDDSLQISLGLIDF 101
           LLEQ+RTIDKQRLTDKITHLDDE M  VD++LQISLGLIDF
Sbjct: 76  LLEQIRTIDKQRLTDKITHLDDEMMDKVDEALQISLGLIDF 116


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 552,047,472
Number of extensions: 18621701
Number of successful extensions: 53310
Number of sequences better than 1.0e-05: 422
Number of HSP's gapped: 53316
Number of HSP's successfully gapped: 422
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)