BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0010.p (426 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7W0.1 Q2B7W0_9BACI Putative uncharacterized protein 432 e-119 O32156.1 YURO_BACSU Uncharacterized ABC transporter extracellula... 357 1e-96 A7Z8H1.1 A7Z8H1_BACA2 YurO 348 7e-94 A8RXQ3.1 A8RXQ3_9CLOT Putative uncharacterized protein 283 2e-74 C4FZX2.1 C4FZX2_ABIDE Putative uncharacterized protein 278 1e-72 >Q2B7W0.1 Q2B7W0_9BACI Putative uncharacterized protein Length = 426 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 204/424 (48%), Positives = 307/424 (72%), Gaps = 8/424 (1%) Query: 1 MLAGLLVVLTAC---SGNNSTPAANGNGDSKGKTTTLKFFHRWPNEPRNSYFNYIKEEFE 57 M + LLV + A +G NS+ + S G + FFHRWPNEPR S+++ +EFE Sbjct: 4 MFSILLVGIIAAGIMAGCNSS--VDSGSKSNGDDVVIDFFHRWPNEPRKSFYDQKIKEFE 61 Query: 58 KQNPGVKIEMESVLNDNYKEKIKVLVSSGDIPDVFSSWSDSFAESLVSSGRVEDLTSMYD 117 + +PGV I ++SVLND+YKEKI+VLVS+ +P++FSSWSDSFAE+LVSSGR+++L + + Sbjct: 62 ESHPGVTINVDSVLNDSYKEKIRVLVSNDGLPEIFSSWSDSFAENLVSSGRIKELNDIMN 121 Query: 118 SDPDWAKTLVQNQLKSFTFDDKIYGVPFTMDGKVFFYNKKIFSKLGLEKPKTWDEFIALL 177 + +W+ +++++Q FTFDD YG+PFT+DGK FFYNK+IF K ++ PKT+DE + +L Sbjct: 122 ENTEWSGSILESQYAGFTFDDSTYGIPFTVDGKAFFYNKEIFEKNNIKVPKTYDELVDVL 181 Query: 178 DKLKASGYDTPIIEGLQDSWAVGHYLGTMNQRMLSPEVLATDYAVGTGQ-FTDPGYLQVL 236 ++LK++GY+TP++EGL ++WA+ HYLGT+ R++ PEV DY + + +TD GY++ L Sbjct: 182 EQLKSAGYETPVVEGLTNAWAISHYLGTIFDRVVDPEVREADYNLESDTPYTDEGYIRGL 241 Query: 237 KYWQKLSSYMGPNATSVNHEATRNMFIAGEVPIHYLQFAELGYLKDKPDLEFDYFNFPQF 296 + +Q+L+ +MG +T+++HEA RNMF AGEVPI Y+QFAE+G ++D D++ +FNFP+ Sbjct: 242 EIFQELTGFMGDVSTAIDHEAARNMFAAGEVPILYMQFAEVGLVQDIGDVDIGFFNFPEV 301 Query: 297 SEGKGNPEGLTGAPEGFMISKETANKELAEKFVKFIVSPENAAKFQQDVGSMTTVIGAAT 356 ++G G + LTGAPEG+M+SK+ A KE E F+KF+ S E A +F + G + V T Sbjct: 302 TDGAGRADSLTGAPEGWMLSKD-APKEAVE-FLKFLTSEETAQEFTKADGQLNAVKNGVT 359 Query: 357 KENSPPGTLEAIEVIQNAAETTPWLDNAVDASVADAFMRGGQAIAADIETPENVLKEVQT 416 +EN+ P + EA +++ +AA T+PW DNAVD ++AD FMRGGQ +A + PE+++KEVQ Sbjct: 360 EENTSPTSYEAYQIVLDAASTSPWFDNAVDITIADIFMRGGQELATKQKKPEDIMKEVQK 419 Query: 417 AAEK 420 A K Sbjct: 420 EAAK 423 >O32156.1 YURO_BACSU Uncharacterized ABC transporter extracellular-binding protein yurO Length = 422 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/419 (42%), Positives = 260/419 (62%), Gaps = 5/419 (1%) Query: 5 LLVVLTACSGNNSTPAANGNGDSKGKTTTLKFFHRWPNEPRNSYFNYIKEEFEKQNPGVK 64 L +++ A S ++ + + GK T LKFFHRWP EP SYF + +EFEK +P + Sbjct: 6 LFLIIAAVSMLTIAGCSSQSSSADGKVT-LKFFHRWPKEPEKSYFEEVVKEFEKDHPDID 64 Query: 65 IEMESVLNDNYKEKIKVLVSSGDIPDVFSSWSDSFAESLVSSGRVEDLTSMYDSDPDWAK 124 I++E+VLND+YK+KIKV++ + PD++ SWSD FA + + DL+S Y +D DW+ Sbjct: 65 IQIEAVLNDSYKDKIKVMLGTTSPPDIYFSWSDEFAFKFIRGNKALDLSSYYKNDTDWSS 124 Query: 125 TLVQNQLKSFTFDDKIYGVPFTMDGKVFFYNKKIFSKLGLEKPKTWDEFIALLDKLKASG 184 LVQ+Q+ FT+++K YGVP+ MD K FFYNK IF KL L+ PKTWDE I + KLK G Sbjct: 125 QLVQSQITPFTYENKQYGVPWQMDAKSFFYNKDIFQKLNLDPPKTWDELIDVSKKLKEHG 184 Query: 185 YDTPIIEGLQDSWAVGHYLGTMNQRMLSPEVLATDYAVGTGQFTDPGYLQVLKYWQKLSS 244 Y TPI G + +W + HY+GT+NQRM+ + DY TG+FTD GY++ L+ Q+L Sbjct: 185 Y-TPISFGTKATWTISHYIGTLNQRMVDEKTREKDYNAKTGEFTDEGYVKALEKLQELMP 243 Query: 245 YMGPNATSVNHEATRNMFIAGEVPIHYLQFAELGYLKDKPDLEFDYFNFPQFSEGKGNPE 304 Y + SV+HE R F +G+ + Y + AE+ ++ + F FP+ S KG+ E Sbjct: 244 YFNKHVNSVDHEYVRQQFKSGKSAMIYAETAEIKLVE---PVNLGMFPFPEISGQKGSSE 300 Query: 305 GLTGAPEGFMISKETANKELAEKFVKFIVSPENAAKFQQDVGSMTTVIGAATKENSPPGT 364 LTGAPEGFMIS T + + A +F++F+ S K +DVG + V G AT+EN+ Sbjct: 301 ALTGAPEGFMISSRTKHPKEAMEFLQFLTSKRMGEKLVKDVGKYSAVQGTATEENATAIQ 360 Query: 365 LEAIEVIQNAAETTPWLDNAVDASVADAFMRGGQAIAADIETPENVLKEVQTAAEKLQA 423 EA++ I +A PW D VD VADA++ G Q + TP+ V+K VQ AA++++A Sbjct: 361 REAVQHIVDAKSMVPWFDMDVDVEVADAYLTGVQQMLGGDMTPQQVMKAVQKAAKQVRA 419 >A7Z8H1.1 A7Z8H1_BACA2 YurO Length = 428 Score = 348 bits (892), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 178/422 (42%), Positives = 252/422 (59%), Gaps = 7/422 (1%) Query: 2 LAGLLVVLTACSGNNSTPAANGNGDSKGKTTTLKFFHRWPNEPRNSYFNYIKEEFEKQNP 61 L L V+L C + + + + D K TLKFFHRWP EP SYF +EFE +P Sbjct: 11 LICLFVLLAVCLSAAACSSQSSSSDGK---VTLKFFHRWPKEPEKSYFEEAVKEFEATHP 67 Query: 62 GVKIEMESVLNDNYKEKIKVLVSSGDIPDVFSSWSDSFAESLVSSGRVEDLTSMYDSDPD 121 + I+ E+VLND+YK+K+KV++ + PD+F SWSD FA + + DL+S Y D D Sbjct: 68 DIHIQTEAVLNDSYKDKVKVMLGTTSPPDIFFSWSDRFAYKFIKGDKALDLSSYYQQDKD 127 Query: 122 WAKTLVQNQLKSFTFDDKIYGVPFTMDGKVFFYNKKIFSKLGLEKPKTWDEFIALLDKLK 181 W+ LVQ+Q+K FT D K YGVP+ MD K FFYNK IF+ L L+ P TWDE I + +KLK Sbjct: 128 WSSQLVQSQIKPFTHDGKQYGVPWQMDAKSFFYNKDIFNTLHLKPPATWDELITVSEKLK 187 Query: 182 ASGYDTPIIEGLQDSWAVGHYLGTMNQRMLSPEVLATDYAVGTGQFTDPGYLQVLKYWQK 241 +GY PI G + W + HY+GT+NQRM+ + A DY+ TG+FTD GY++ L+ Q+ Sbjct: 188 ENGY-IPISFGTKAPWTISHYIGTLNQRMVDEKTRAKDYSPETGEFTDEGYVKALEKLQE 246 Query: 242 LSSYMGPNATSVNHEATRNMFIAGEVPIHYLQFAELGYLKDKPDLEFDYFNFPQFSEGKG 301 L Y + SV+HE R F +G+ + Y + AE+ ++ + F FP+ S KG Sbjct: 247 LLPYFTKHVNSVDHEYVRQQFTSGKAAMIYAETAEIKLVE---PVNLGLFPFPKISGEKG 303 Query: 302 NPEGLTGAPEGFMISKETANKELAEKFVKFIVSPENAAKFQQDVGSMTTVIGAATKENSP 361 +P LTG+PEGFMIS +T + + A +F++F+ S + K +DVG + V G AT+ NS Sbjct: 304 SPRALTGSPEGFMISSKTKHPKEAMEFLQFLTSKKMGEKLIKDVGKYSAVQGTATENNSA 363 Query: 362 PGTLEAIEVIQNAAETTPWLDNAVDASVADAFMRGGQAIAADIETPENVLKEVQTAAEKL 421 P EA++ I A PW D VD +AD + G Q + TP V+ VQ AA ++ Sbjct: 364 PIQREAVQDIVRAETMVPWFDMDVDVEIADVYAAGVQQMLGGTMTPREVMNSVQKAARQV 423 Query: 422 QA 423 +A Sbjct: 424 KA 425 >A8RXQ3.1 A8RXQ3_9CLOT Putative uncharacterized protein Length = 465 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 153/438 (34%), Positives = 237/438 (54%), Gaps = 21/438 (4%) Query: 5 LLVVLTACSG---------NNSTPAANGNGDS--------KGKTTTLKFFHRWPNEPRNS 47 + + LTAC+G ++T ++ D+ G T+KFFHR+P+EP N Sbjct: 25 MAMSLTACAGFTPSGGNDKKDTTASSEAGADTGVTQAAQTSGAKKTIKFFHRFPDEPFNG 84 Query: 48 YFNYIKEEFEKQNPGVKIEMESVLNDNYKEKIKVLVSSGDIPDVFSSWSDSFAESLVSSG 107 + E+E+ +P + I +ES ND YKEKIKV+V D PD+F SW F+E + Sbjct: 85 FIESKIAEYEEAHPDIDIVVESAQNDPYKEKIKVVVGGNDAPDIFFSWCGEFSERFLREN 144 Query: 108 RVEDLTSMYDSDPDWAKTLVQNQLKSFTFDDKIYGVPFTMDGKVFFYNKKIFSKLGLEKP 167 + DLT ++D +W +L+++QL ++T D YG+PF +D K+FFYN +IF + GL+ P Sbjct: 145 LIMDLTPYLEADKEWKDSLMESQLVNYTKDGVTYGIPFRLDCKLFFYNTQIFEENGLKAP 204 Query: 168 KTWDEFIALLDKLKASGYDTPIIEGLQDSWAVGHYLGTMNQRMLSPEVLATDYAVGTGQF 227 TWDE I + DKLKA+G TPI G Q+ W HY+G++NQ ++S EV D+ G+F Sbjct: 205 ATWDELIEVCDKLKAAGV-TPISYGNQEKWPAAHYIGSLNQMLVSDEVREKDFDPAQGEF 263 Query: 228 TDPGYLQVLKYWQKLSSYMGPNATSVNHEATRNMFIAGEVPIHYLQFAELGYLKD-KPDL 286 TDPGY + LK +Q+L Y + R F G+ ++Y + E+ Y+ D DL Sbjct: 264 TDPGYEEALKCYQQLIPYCNDAVNGTAADMARTNFAMGKSAMYYAELIEIPYITDLNADL 323 Query: 287 EFDYFNFPQFSEGKGNPEGLTGAPEGFMISKETANKELAEKFVKFIVSPENAAKFQQDVG 346 ++ F FP EG GNP+ LTG PEGF++S +T + +F+K+ + PE + Q +G Sbjct: 324 DYGMFKFP-VVEGPGNPDILTGVPEGFVVSSKTKYPDECIEFLKWFLGPEVGKEQAQTIG 382 Query: 347 SMTTVIGAATKENSPPGTLEAIEVIQNAAETTPWLDNAVDASVADAFMRGGQAIAADIET 406 N L+ +V+ A PW DNA+ ++ D ++ + T Sbjct: 383 WFNASKNVTEGVNDTK-LLDGYKVVNEAKIMGPWFDNALYSTTCDEYLTAASDLTNGDIT 441 Query: 407 PENVLKEVQTAAEKLQAV 424 P + VQ A++ Q++ Sbjct: 442 PAEAMARVQKVAKEAQSL 459 >C4FZX2.1 C4FZX2_ABIDE Putative uncharacterized protein Length = 455 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 153/441 (34%), Positives = 238/441 (53%), Gaps = 20/441 (4%) Query: 1 MLAGLLVV-LTACSG----------NNSTPAANGNGDSKGKTTT-----LKFFHRWPNEP 44 +LAG++ + L+ACS +N++ +G ++ TT +KFFHR+P+EP Sbjct: 12 LLAGIMAISLSACSAASNDGSNKDASNTSKQETKSGSAQASQTTGDKKVIKFFHRFPDEP 71 Query: 45 RNSYFNYIKEEFEKQNPGVKIEMESVLNDNYKEKIKVLVSSGDIPDVFSSWSDSFAESLV 104 N + E+E+ +P + I +ES ND YKEKIKV+V D PD+F SW F+E + Sbjct: 72 FNGFIESKITEYEEAHPDIDIVVESAQNDAYKEKIKVVVGGKDAPDIFFSWCGEFSERFL 131 Query: 105 SSGRVEDLTSMYDSDPDWAKTLVQNQLKSFTFDDKIYGVPFTMDGKVFFYNKKIFSKLGL 164 + +LT + D +W +L+++QL ++T D YG+PF +D K+FFYN KIF + GL Sbjct: 132 REDLIMNLTPYLEKDKEWKDSLIESQLVNYTKDGVTYGIPFRLDCKLFFYNTKIFEENGL 191 Query: 165 EKPKTWDEFIALLDKLKASGYDTPIIEGLQDSWAVGHYLGTMNQRMLSPEVLATDYAVGT 224 + P W+EFI + DKLKA+G TPI G QD W HY+G++NQ ++S EV D+ Sbjct: 192 KVPTKWNEFIEVCDKLKAAGV-TPISYGNQDKWPSAHYIGSLNQMLVSDEVREKDFDPSQ 250 Query: 225 GQFTDPGYLQVLKYWQKLSSYMGPNATSVNHEATRNMFIAGEVPIHYLQFAELGYLKD-K 283 G+FTDPGY + LK +Q+L Y + R F G+ ++Y + E+ Y+ D Sbjct: 251 GEFTDPGYEEALKLYQQLLPYCNDAVNGTAADMARTNFAMGKAAMYYAEIIEIPYITDLN 310 Query: 284 PDLEFDYFNFPQFSEGKGNPEGLTGAPEGFMISKETANKELAEKFVKFIVSPENAAKFQQ 343 L++ F FP EG GNP+ LTG PEGF++S +T + F+K+ + PE Q Sbjct: 311 AGLDYGMFKFP-VVEGPGNPDILTGVPEGFVVSSKTKYPDECIAFLKWFLGPEVGKAQAQ 369 Query: 344 DVGSMTTVIGAATKENSPPGTLEAIEVIQNAAETTPWLDNAVDASVADAFMRGGQAIAAD 403 +G N L+ +VI A PW D+A+ ++ D ++ + Sbjct: 370 TIGWFNASKNVTDGVNDKK-LLDGYKVITEAKIMGPWFDSALYSTTCDEYLTAASDLTNG 428 Query: 404 IETPENVLKEVQTAAEKLQAV 424 TP + +Q A++ Q++ Sbjct: 429 DITPAEAMARIQKVAKEAQSL 449 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,670,163,293 Number of extensions: 117302190 Number of successful extensions: 261235 Number of sequences better than 1.0e-05: 2085 Number of HSP's gapped: 260546 Number of HSP's successfully gapped: 2085 Length of query: 426 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 288 Effective length of database: 1,760,596,133 Effective search space: 507051686304 Effective search space used: 507051686304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)