BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0009.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7V9.1 Q2B7V9_9BACI Putative uncharacterized protein 358 4e-97 O32155.1 YURN_BACSU Probable ABC transporter permease protein yurN 327 9e-88 A7Z8H0.1 A7Z8H0_BACA2 YurN 316 2e-84 C0D4C7.1 C0D4C7_9CLOT Putative uncharacterized protein 273 1e-71 A1R1Z0.1 A1R1Z0_ARTAT Putative ABC-type sugar transport systems,... 268 6e-70 >Q2B7V9.1 Q2B7V9_9BACI Putative uncharacterized protein Length = 294 Score = 358 bits (918), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 176/295 (59%), Positives = 229/295 (77%), Gaps = 2/295 (0%) Query: 1 MRTRR-TIAPYLFVLPCVLMLAVFVYMPLIQNFFYSFQNISLLSGKSSFAGFDNYRTLFS 59 M+ R+ ++ P LF+LP VL L +F+Y+PLIQNF+ SF + S+ S SF G N + LF Sbjct: 1 MKLRKISLTPILFLLPTVLFLGIFIYIPLIQNFYNSFFDFSVFSDSKSFVGMSNIKKLFE 60 Query: 60 DPVVGKALINNVKYAVISLICQVGFGLVLAAILEEEFLRKVSAIFRTIFFIPVIISITVI 119 D V+G AL NNVKY VIS++ Q+ F L+LA+ILE++ R+V+ R I+FIPV+ISI+VI Sbjct: 61 DEVIGIALWNNVKYGVISVVFQIFFALILASILEDKLFRRVAPALRIIYFIPVMISISVI 120 Query: 120 CLLFSFVYNPTDGLLNMFLQAVGLDAWAKPWLGSGTTAIYAVIAVSQWQSIGYCMMLFIV 179 LLF FVYNP GLLN FL+ +GL AKPWLG+ TTAIY+VIA+SQWQSIG MLFIV Sbjct: 121 ALLFGFVYNPQIGLLNSFLELIGLGDLAKPWLGNSTTAIYSVIAMSQWQSIGLITMLFIV 180 Query: 180 AIQKIPRDLYEAAKIDGAGKIKIFFSITLPQVKEMIFVNSLLTITGAFMVFNEPFILTKG 239 AIQKIP +LYEA+ IDGAGKI+ FF ITLPQVKE +FVN L+T+TG+ +VFNEP+ILT Sbjct: 181 AIQKIPNELYEASHIDGAGKIRQFFHITLPQVKETMFVNLLITVTGSILVFNEPYILTN- 239 Query: 240 GGPGTSSITIAVLMYQNGFVRDSMGYAATISLLIFVITAVLALIQTLSFRTGKGD 294 GGPG SS+T+AV MYQNGF +D+MGYA++I+ +F+++A+ AL+Q +TGK D Sbjct: 240 GGPGNSSMTLAVHMYQNGFFKDNMGYASSIATTMFLLSAIFALVQIKVSKTGKED 294 >O32155.1 YURN_BACSU Probable ABC transporter permease protein yurN Length = 292 Score = 327 bits (838), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 160/294 (54%), Positives = 217/294 (73%), Gaps = 2/294 (0%) Query: 1 MRTRRTIAPYLFVLPCVLMLAVFVYMPLIQNFFYSFQNISLLSGKSSFAGFDNYRTLFSD 60 M + I PYLF++P ++ L +FVY+P+ +N F S S S + +F G NY LF D Sbjct: 1 MVNQNKIIPYLFLVPALVFL-LFVYIPIFENVFLSLFQWSSFSPEKTFIGLKNYVELFHD 59 Query: 61 PVVGKALINNVKYAVISLICQVGFGLVLAAILEEEFLRKVSAIFRTIFFIPVIISITVIC 120 PV +AL NNV YAVIS++CQV GL+LAA+LE++ +RK S FRT+FF+PV+IS+TVI Sbjct: 60 PVFYQALTNNVLYAVISIVCQVFGGLILAAVLEDKLVRKWSPFFRTVFFLPVVISMTVIA 119 Query: 121 LLFSFVYNPTDGLLNMFLQAVGLDAWAKPWLGSGTTAIYAVIAVSQWQSIGYCMMLFIVA 180 LLF F+YNP GLLN LQA+GLD + WLG +TA+ +VI VSQWQS+GY ML+IV+ Sbjct: 120 LLFDFIYNPETGLLNQLLQAIGLDQLTRAWLGDDSTAMLSVIFVSQWQSVGYIAMLYIVS 179 Query: 181 IQKIPRDLYEAAKIDGAGKIKIFFSITLPQVKEMIFVNSLLTITGAFMVFNEPFILTKGG 240 IQKIP +LYEAA++DGAGKI+ FF IT+PQ KEM FV ++T+TGAF VFNEP+ILT GG Sbjct: 180 IQKIPDELYEAARLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILT-GG 238 Query: 241 GPGTSSITIAVLMYQNGFVRDSMGYAATISLLIFVITAVLALIQTLSFRTGKGD 294 GPG +S ++ +Y++ F +D MGYA+ I+ ++ +IT L+L+Q F+TGK + Sbjct: 239 GPGKASEVLSTFLYKSAFTKDMMGYASAIATVVLIITLALSLMQMKFFKTGKEE 292 >A7Z8H0.1 A7Z8H0_BACA2 YurN Length = 296 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 160/292 (54%), Positives = 214/292 (73%), Gaps = 2/292 (0%) Query: 3 TRRTIAPYLFVLPCVLMLAVFVYMPLIQNFFYSFQNISLLSGKSSFAGFDNYRTLFSDPV 62 +R+ PYLF+ P ++ L +FVY+P+I+N F+S S + +F G NY LF DPV Sbjct: 7 SRKRFIPYLFLAPALIFL-LFVYIPIIENVFFSLFEWSSFQPEKTFIGLKNYIDLFHDPV 65 Query: 63 VGKALINNVKYAVISLICQVGFGLVLAAILEEEFLRKVSAIFRTIFFIPVIISITVICLL 122 AL NNV YAVISLICQVG GL+LAA+LE+ +RK S FRT+FF+PV+IS+TVI LL Sbjct: 66 FFTALRNNVLYAVISLICQVGGGLILAAVLEDRLVRKWSPFFRTVFFLPVVISMTVIALL 125 Query: 123 FSFVYNPTDGLLNMFLQAVGLDAWAKPWLGSGTTAIYAVIAVSQWQSIGYCMMLFIVAIQ 182 F F+YNP GLLN L+AVGLD + WLG TA+ +VI VSQWQS+GY ML+IV+IQ Sbjct: 126 FDFIYNPEIGLLNQLLEAVGLDELTRAWLGDENTAMLSVIFVSQWQSVGYIAMLYIVSIQ 185 Query: 183 KIPRDLYEAAKIDGAGKIKIFFSITLPQVKEMIFVNSLLTITGAFMVFNEPFILTKGGGP 242 IP +LYE+A++DGAGKI+ FF IT+PQ KEM FV ++T+TGAF VFNEP+ILT GGGP Sbjct: 186 SIPAELYESAQLDGAGKIQQFFHITVPQTKEMSFVAVVMTLTGAFTVFNEPYILT-GGGP 244 Query: 243 GTSSITIAVLMYQNGFVRDSMGYAATISLLIFVITAVLALIQTLSFRTGKGD 294 G +S ++ +Y++ F +D MGYA+ I+ ++ ++T L+LIQ F+TGK + Sbjct: 245 GNASEVLSTFLYKSAFTKDMMGYASAIATVVLLLTLALSLIQMKFFKTGKEE 296 >C0D4C7.1 C0D4C7_9CLOT Putative uncharacterized protein Length = 295 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 143/284 (50%), Positives = 194/284 (68%), Gaps = 2/284 (0%) Query: 11 LFVLPCVLMLAVFVYMPLIQNFFYSFQNISLLSGKSSFAGFDNYRTLFSDPVVGKALINN 70 L++LP ++++ VF+Y+ + NF+YS S + K + G NY +F D AL NN Sbjct: 10 LYLLPALVLVTVFIYVAIGLNFYYSLFRWSTYTEKV-WVGLSNYVRMFQDQNFWTALTNN 68 Query: 71 VKYAVISLICQVGFGLVLAAILEEEFLRKVSAIFRTIFFIPVIISITVICLLFSFVYNPT 130 + +AV S++CQVGF LVLAA+LE+++LRK RTIFFIP +ISI+V+ L++ + NP+ Sbjct: 69 LFFAVTSVVCQVGFALVLAAVLEQKWLRKAGGFCRTIFFIPSLISISVVSLMWQLMLNPS 128 Query: 131 DGLLNMFLQAVGLDAWAKPWLGSGTTAIYAVIAVSQWQSIGYCMMLFIVAIQKIPRDLYE 190 G++N FL+AVGL A A WLG +TAI+ VIA SQWQ +GY MLF+VAIQ+IP D YE Sbjct: 129 MGVVNRFLKAVGLGALAIDWLGKPSTAIWCVIASSQWQFVGYTAMLFVVAIQRIPDDFYE 188 Query: 191 AAKIDGAGKIKIFFSITLPQVKEMIFVNSLLTITGAFMVFNEPFILTKGGGPGTSSITIA 250 AAKIDGA ++ FF ITLP VKEMI +N T+ GAF VF+E +I+T GGPG SS + Sbjct: 189 AAKIDGATSLQSFFYITLPNVKEMILLNLTTTLIGAFKVFDEVYIMT-AGGPGRSSEVMG 247 Query: 251 VLMYQNGFVRDSMGYAATISLLIFVITAVLALIQTLSFRTGKGD 294 L+Y+ GF D+MGYA+ I IFVIT L++ Q F G + Sbjct: 248 TLLYRTGFREDAMGYASAIGAAIFVITFALSIAQIRMFNMGNEE 291 >A1R1Z0.1 A1R1Z0_ARTAT Putative ABC-type sugar transport systems, permease components Length = 323 Score = 268 bits (684), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 132/274 (48%), Positives = 189/274 (68%), Gaps = 1/274 (0%) Query: 11 LFVLPCVLMLAVFVYMPLIQNFFYSFQNISLLSGKSSFAGFDNYRTLFSDPVVGKALINN 70 ++VLP VL+L VF Y+PL+QN +SF + SG+ +F G DNY +F+DP+ K+L+NN Sbjct: 40 MWVLPAVLLLGVFAYLPLVQNLGFSFLKWDIYSGRQTFVGADNYVRMFNDPIFWKSLLNN 99 Query: 71 VKYAVISLICQVGFGLVLAAILEEEFLRKVSAIFRTIFFIPVIISITVICLLFSFVYNPT 130 YA+IS+ QV L+LAA++E ++ I R ++F+P IS+TV LLF F+Y P Sbjct: 100 TLYAIISIAFQVFGALILAAMIEGLRSQRWRGILRAVYFVPSAISLTVAGLLFYFIYEPE 159 Query: 131 DGLLNMFLQAVGLDAWAKPWLGSGTTAIYAVIAVSQWQSIGYCMMLFIVAIQKIPRDLYE 190 G+LN L +GL + + WLG TAI+A+IA+SQWQ GYC +LF VA+Q+IP +LYE Sbjct: 160 MGILNAALDFLGLGNFTQAWLGQENTAIFAIIAMSQWQGFGYCTLLFSVALQRIPSELYE 219 Query: 191 AAKIDGAGKIKIFFSITLPQVKEMIFVNSLLTITGAFMVFNEPFILTKGGGPGTSSITIA 250 AA IDG G + FFSI+LP V+EM + ++T++GAF VFNE ++T GGP SS + Sbjct: 220 AASIDGVGPFQRFFSISLPLVREMTGLMMIVTVSGAFQVFNEVMVMTS-GGPNNSSQVLG 278 Query: 251 VLMYQNGFVRDSMGYAATISLLIFVITAVLALIQ 284 +Y++GFVR+ GYAA ++ +F+IT VLA+IQ Sbjct: 279 TWLYRSGFVRNDFGYAAAVATAVFIITLVLAVIQ 312 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,634,264,931 Number of extensions: 65837090 Number of successful extensions: 264870 Number of sequences better than 1.0e-05: 6534 Number of HSP's gapped: 252237 Number of HSP's successfully gapped: 6556 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)