BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0008.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value O32154.1 YURM_BACSU Probable ABC transporter permease protein yurM 316 1e-84 A7Z8G9.1 A7Z8G9_BACA2 YurM 314 7e-84 Q2B7V8.1 Q2B7V8_9BACI Putative uncharacterized protein 295 4e-78 C0D4C6.1 C0D4C6_9CLOT Putative uncharacterized protein 243 2e-62 C4FZX0.1 C4FZX0_ABIDE Putative uncharacterized protein 233 1e-59 >O32154.1 YURM_BACSU Probable ABC transporter permease protein yurM Length = 300 Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 149/251 (59%), Positives = 194/251 (77%) Query: 25 YPLFWMVSSSFKSYDEIFGAVWNLPSEWLFSNYVTAWTKGIGNYFMNSVIVTVSTIAGVV 84 YPL WMV S+FK+ D+IF W+LPS W N+V+AW +GI +YFMNSVIVT T V Sbjct: 50 YPLLWMVMSAFKNSDDIFEHSWSLPSSWHPENFVSAWNQGISSYFMNSVIVTALTCVITV 109 Query: 85 IIASLCAYGLSRFRFRYSKTLFMFVLGGMMLDPQVCLVPLYKLLQNLNIHNTYFALILPY 144 I++ AYGLSRF F+ + LGG+ML PQV LVPLY ++Q+L ++NTY+ALILPY Sbjct: 110 FISAWAAYGLSRFEFKGKGFFLVLCLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPY 169 Query: 145 IAFRLSIAVLLIRSYFLGIPKEIEESATMDGCSVFRTYLNIFLPMSLPIIMTTIILTSYY 204 A+R+ ++LIRSYFL I KE+EE+A +DGC+ F + IFLPMS+PI++T+ ILT+Y+ Sbjct: 170 AAYRIPFTIILIRSYFLSISKELEEAAYLDGCTSFGVFFRIFLPMSVPILVTSGILTAYH 229 Query: 205 AWNEFLFSIIFIDSDKYRTIPAGLMNFKDALSTDWGVLLAGLVISSMPLIILFIFMQKYF 264 WNEF+F+IIFID + RTIPAGLM F+DAL TDWGVLLAGL IS+ P+IILF+ MQKYF Sbjct: 230 TWNEFMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISAAPIIILFLLMQKYF 289 Query: 265 IQGMSDGSVKG 275 ++G++ GSVKG Sbjct: 290 VRGIASGSVKG 300 >A7Z8G9.1 A7Z8G9_BACA2 YurM Length = 294 Score = 314 bits (804), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 149/251 (59%), Positives = 194/251 (77%) Query: 25 YPLFWMVSSSFKSYDEIFGAVWNLPSEWLFSNYVTAWTKGIGNYFMNSVIVTVSTIAGVV 84 YPL WM S+FKS DEIF W+LPS W N+V+AW +GI YFMNSVIVTV T V Sbjct: 44 YPLLWMAVSAFKSSDEIFEHSWSLPSVWHPENFVSAWNQGISAYFMNSVIVTVLTCLITV 103 Query: 85 IIASLCAYGLSRFRFRYSKTLFMFVLGGMMLDPQVCLVPLYKLLQNLNIHNTYFALILPY 144 +++ AYGL+RF+F+ + + LGG+ML PQV LVPLY ++Q+L ++NTY+ALILPY Sbjct: 104 FVSAWAAYGLARFQFKGKGFVLIICLGGLMLTPQVSLVPLYSIIQSLGLYNTYWALILPY 163 Query: 145 IAFRLSIAVLLIRSYFLGIPKEIEESATMDGCSVFRTYLNIFLPMSLPIIMTTIILTSYY 204 A+R+ V+LIRSYFL I KE+EE+A +DGC+ F + IFLPMS+PI++T+ ILT+Y+ Sbjct: 164 AAYRIPFTVILIRSYFLSISKELEEAAYLDGCTSFGIFFRIFLPMSVPILVTSGILTAYH 223 Query: 205 AWNEFLFSIIFIDSDKYRTIPAGLMNFKDALSTDWGVLLAGLVISSMPLIILFIFMQKYF 264 WNEF+F+IIFID + RTIPAGLM F+DAL TDWGVLLAGL IS+ P+I LF+ MQ+YF Sbjct: 224 TWNEFMFAIIFIDDENLRTIPAGLMQFRDALQTDWGVLLAGLTISAAPIIALFLLMQRYF 283 Query: 265 IQGMSDGSVKG 275 I+G++ GSVKG Sbjct: 284 IRGIAAGSVKG 294 >Q2B7V8.1 Q2B7V8_9BACI Putative uncharacterized protein Length = 296 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 131/252 (51%), Positives = 196/252 (77%) Query: 24 MYPLFWMVSSSFKSYDEIFGAVWNLPSEWLFSNYVTAWTKGIGNYFMNSVIVTVSTIAGV 83 +YPLFWMV SSFKSY EI+ VW LPSEW F NY AW KGI NYF+NS VT +I Sbjct: 45 LYPLFWMVISSFKSYKEIYSNVWALPSEWHFENYALAWEKGIQNYFLNSAYVTGFSILLT 104 Query: 84 VIIASLCAYGLSRFRFRYSKTLFMFVLGGMMLDPQVCLVPLYKLLQNLNIHNTYFALILP 143 V+ ++ A+ L+R+R + +F++GG+M++PQV L+PL+++L N+ +T +ALIL Sbjct: 105 VMTGTMAAFVLARYRSGWIDASLLFIIGGLMMNPQVALIPLFEILSLFNLIDTRWALILT 164 Query: 144 YIAFRLSIAVLLIRSYFLGIPKEIEESATMDGCSVFRTYLNIFLPMSLPIIMTTIILTSY 203 Y+A+RL + ++LIR++F+ +P E+ ESA +DGCS F Y I+LP+S+PI++T++I+ ++ Sbjct: 165 YVAYRLPLTIILIRAFFITVPHELSESALIDGCSEFGIYWRIYLPLSIPIVITSVIINAF 224 Query: 204 YAWNEFLFSIIFIDSDKYRTIPAGLMNFKDALSTDWGVLLAGLVISSMPLIILFIFMQKY 263 YAWNEFLF+ +FI+S + +TIP+GLM F+DAL TDWGVLL+G+VI+S+P+++L I +QKY Sbjct: 225 YAWNEFLFATVFINSSELKTIPSGLMVFRDALRTDWGVLLSGMVIASVPMVLLLIALQKY 284 Query: 264 FIQGMSDGSVKG 275 ++G+++GSVKG Sbjct: 285 LVRGLAEGSVKG 296 >C0D4C6.1 C0D4C6_9CLOT Putative uncharacterized protein Length = 290 Score = 243 bits (619), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 175/251 (69%) Query: 25 YPLFWMVSSSFKSYDEIFGAVWNLPSEWLFSNYVTAWTKGIGNYFMNSVIVTVSTIAGVV 84 YPLFWMV S FK + + LP +W FSNYV+ W GI YF NS+++TV + A V Sbjct: 40 YPLFWMVLSGFKDNTGLLTNPFGLPDKWRFSNYVSIWNNGIRRYFFNSLVITVLSSALVA 99 Query: 85 IIASLCAYGLSRFRFRYSKTLFMFVLGGMMLDPQVCLVPLYKLLQNLNIHNTYFALILPY 144 +++S A+ LSR+RFR + FM++L G+ML PQV L+ YK+LQ L+++N+Y L+ Y Sbjct: 100 VVSSFAAFALSRYRFRSRRFWFMYLLCGLMLAPQVSLISNYKILQGLHLYNSYAGLVFVY 159 Query: 145 IAFRLSIAVLLIRSYFLGIPKEIEESATMDGCSVFRTYLNIFLPMSLPIIMTTIILTSYY 204 AFR+ + L+ SYF+ +PK+IEE+A +DGCS F+ + +I LPMS PI+ T ILT Y Sbjct: 160 TAFRVPYTMFLMWSYFMTLPKDIEEAACIDGCSSFQNFAHILLPMSKPIMATGTILTVRY 219 Query: 205 AWNEFLFSIIFIDSDKYRTIPAGLMNFKDALSTDWGVLLAGLVISSMPLIILFIFMQKYF 264 WN+FLFS+++ +S RTIP GL K T+W L+AG+VIS++P+I+LF F QKYF Sbjct: 220 VWNDFLFSMVYTESAALRTIPYGLNALKSETGTEWAKLMAGMVISAIPIIVLFTFTQKYF 279 Query: 265 IQGMSDGSVKG 275 ++G++ G+VKG Sbjct: 280 VRGLAVGAVKG 290 >C4FZX0.1 C4FZX0_ABIDE Putative uncharacterized protein Length = 274 Score = 233 bits (594), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 177/250 (70%) Query: 26 PLFWMVSSSFKSYDEIFGAVWNLPSEWLFSNYVTAWTKGIGNYFMNSVIVTVSTIAGVVI 85 P W++ +S K+ E+F LP + F N+++AW KG+ YF NSVI++ ++ ++ Sbjct: 25 PAVWLIMNSLKTNVELFTDSLALPVKLQFGNFISAWDKGLYKYFGNSVIISSVSLISILF 84 Query: 86 IASLCAYGLSRFRFRYSKTLFMFVLGGMMLDPQVCLVPLYKLLQNLNIHNTYFALILPYI 145 ++SL AYG++RF R+ +F+ +LGGM L QV LVPLYK+LQ ++++NTY+A+ILPYI Sbjct: 85 LSSLLAYGITRFSSRFGNLIFLIILGGMALSEQVALVPLYKILQAVHLYNTYWAVILPYI 144 Query: 146 AFRLSIAVLLIRSYFLGIPKEIEESATMDGCSVFRTYLNIFLPMSLPIIMTTIILTSYYA 205 AFR+ L+R+YFLGIPKE+EE+A +DG + + + I +P+S PI + I+ + Sbjct: 145 AFRIPFTTFLMRAYFLGIPKELEEAAVIDGYNSLQIFRKIIVPISKPIFASCAIVNLNFV 204 Query: 206 WNEFLFSIIFIDSDKYRTIPAGLMNFKDALSTDWGVLLAGLVISSMPLIILFIFMQKYFI 265 WNEFLF+ +F++S TIP GLM FK + +D+ V+LAG+ I+S+P+IIL++ MQK F+ Sbjct: 205 WNEFLFANVFLESKSIMTIPIGLMTFKGDMRSDYVVMLAGITIASLPMIILYLCMQKQFV 264 Query: 266 QGMSDGSVKG 275 +G++ G+VKG Sbjct: 265 RGLTAGAVKG 274 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.143 0.445 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,490,068,172 Number of extensions: 58194840 Number of successful extensions: 232726 Number of sequences better than 1.0e-05: 6088 Number of HSP's gapped: 223303 Number of HSP's successfully gapped: 6091 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)