BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0006.p
         (239 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q57IM0.1 Q57IM0_SALCH Putative regulatory protein, gntR family        157   1e-36
B4T8D7.1 B4T8D7_SALHS GntR family regulatory protein                  156   1e-36
B5P267.1 B5P267_SALET GntR family regulatory protein                  156   1e-36
B5PRV9.1 B5PRV9_SALHA GntR family regulatory protein                  155   2e-36
Q8Z276.1 Q8Z276_SALTI GntR family regulatory protein                  155   4e-36

>Q57IM0.1 Q57IM0_SALCH Putative regulatory protein, gntR family
          Length = 239

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 128/232 (55%), Gaps = 3/232 (1%)

Query: 5   QPDS--IIPLYVQLKDIIKSDIEAGIMKPGQKIPTEFELCEMYSISRRTVRTAISELIEE 62
           QPDS    PLY QL+D +K  I  G  KPGQ+IPTE EL   + +SR TVR A+  L  E
Sbjct: 4   QPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRE 63

Query: 63  GLLDRKQGKGTFITTPKIQAKFGPSVLGFTEICKLNNLRPSSKLVEQRQISATSKLAEAL 122
            LL R  GKGTF++  K Q      ++ F+E+C+    RP S+ ++    S   +    L
Sbjct: 64  NLLTRVSGKGTFVSGEKFQRSM-TGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALL 122

Query: 123 NVPVNSSLVAIRRIMLADEVPVMMDYAVFTDAYNFLLQENMDNHSLYATIKAKRDVSFMR 182
           N+      V I RI  AD+V V ++       + FLL E+++NHSLY  ++ K  + F  
Sbjct: 123 NMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTH 182

Query: 183 QRKSIQTVFADSAQAQYLEIPVGYPLLLSQGTVVSSTMEIIHYGEQHIVGDK 234
            RK I+ V+A    A YL +  GYPL+L++  ++ +  E+    +Q IVGDK
Sbjct: 183 SRKMIELVYASFEVAHYLGVNEGYPLILTKSEMIDNKGELSCVSQQLIVGDK 234


>B4T8D7.1 B4T8D7_SALHS GntR family regulatory protein
          Length = 239

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 129/232 (55%), Gaps = 3/232 (1%)

Query: 5   QPDS--IIPLYVQLKDIIKSDIEAGIMKPGQKIPTEFELCEMYSISRRTVRTAISELIEE 62
           QPDS    PLY QL+D +K  I  G  KPGQ+IPTE EL   + +SR TVR A+  L  E
Sbjct: 4   QPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRE 63

Query: 63  GLLDRKQGKGTFITTPKIQAKFGPSVLGFTEICKLNNLRPSSKLVEQRQISATSKLAEAL 122
            LL R  GKGTF+++ K Q      ++ F+E+C+    RP S+ ++    S  ++    L
Sbjct: 64  NLLTRVSGKGTFVSSEKFQRSM-IGIMSFSELCQSQGRRPGSRTIKSVFESVDNETKALL 122

Query: 123 NVPVNSSLVAIRRIMLADEVPVMMDYAVFTDAYNFLLQENMDNHSLYATIKAKRDVSFMR 182
           N+      V I RI  AD+V V ++       + FLL E+++NHSLY  ++ K  + F  
Sbjct: 123 NMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKHHLWFTH 182

Query: 183 QRKSIQTVFADSAQAQYLEIPVGYPLLLSQGTVVSSTMEIIHYGEQHIVGDK 234
            RK I+ V+A    A YL +  GYPL+L +  ++ +  E+    +Q IVGDK
Sbjct: 183 SRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDK 234


>B5P267.1 B5P267_SALET GntR family regulatory protein
          Length = 239

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 129/232 (55%), Gaps = 3/232 (1%)

Query: 5   QPDS--IIPLYVQLKDIIKSDIEAGIMKPGQKIPTEFELCEMYSISRRTVRTAISELIEE 62
           QPDS    PLY QL+D +K  I  G  KPGQ+IPTE EL   + +SR TVR A+  L  E
Sbjct: 4   QPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRE 63

Query: 63  GLLDRKQGKGTFITTPKIQAKFGPSVLGFTEICKLNNLRPSSKLVEQRQISATSKLAEAL 122
            LL R  GKGTF+++ K Q      ++ F+E+C+    RP S+ ++    S  ++    L
Sbjct: 64  NLLTRVSGKGTFVSSEKFQRSM-IGIMSFSELCQSQGRRPGSRTIKSVFESVDNETKALL 122

Query: 123 NVPVNSSLVAIRRIMLADEVPVMMDYAVFTDAYNFLLQENMDNHSLYATIKAKRDVSFMR 182
           N+      V I RI  AD+V V ++       + FLL E+++NHSLY  ++ K  + F  
Sbjct: 123 NMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKHHLWFTH 182

Query: 183 QRKSIQTVFADSAQAQYLEIPVGYPLLLSQGTVVSSTMEIIHYGEQHIVGDK 234
            RK I+ V+A    A YL +  GYPL+L +  ++ +  E+    +Q IVGDK
Sbjct: 183 SRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDK 234


>B5PRV9.1 B5PRV9_SALHA GntR family regulatory protein
          Length = 239

 Score =  155 bits (393), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 3/232 (1%)

Query: 5   QPDS--IIPLYVQLKDIIKSDIEAGIMKPGQKIPTEFELCEMYSISRRTVRTAISELIEE 62
           QPDS    PLY QL+D +K  I  G  KPGQ+IPTE EL   + +SR TVR A+  L  E
Sbjct: 4   QPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSARWQVSRVTVRKALDALTRE 63

Query: 63  GLLDRKQGKGTFITTPKIQAKFGPSVLGFTEICKLNNLRPSSKLVEQRQISATSKLAEAL 122
            LL R  GKGTF++  K Q      ++ F+E+C+    RP S+ ++    S   +    L
Sbjct: 64  NLLTRVSGKGTFVSGEKFQRSM-TGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALL 122

Query: 123 NVPVNSSLVAIRRIMLADEVPVMMDYAVFTDAYNFLLQENMDNHSLYATIKAKRDVSFMR 182
           N+      V I RI  AD+V V ++       + FLL E+++NHSLY  ++ K  + F  
Sbjct: 123 NMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTH 182

Query: 183 QRKSIQTVFADSAQAQYLEIPVGYPLLLSQGTVVSSTMEIIHYGEQHIVGDK 234
            RK I+ V+A    A YL +  GYPL+L +  ++ +  E+    +Q IVGDK
Sbjct: 183 SRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDK 234


>Q8Z276.1 Q8Z276_SALTI GntR family regulatory protein
          Length = 239

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 3/232 (1%)

Query: 5   QPDS--IIPLYVQLKDIIKSDIEAGIMKPGQKIPTEFELCEMYSISRRTVRTAISELIEE 62
           QPDS    PLY QL+D +K  I  G  KPGQ+IPTE EL   + +SR TVR A+  L  E
Sbjct: 4   QPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSRVTVRKALDALTRE 63

Query: 63  GLLDRKQGKGTFITTPKIQAKFGPSVLGFTEICKLNNLRPSSKLVEQRQISATSKLAEAL 122
            LL R  GKGTF++  K Q      ++ F+E+C+    RP S+ ++    S   +    L
Sbjct: 64  NLLTRVSGKGTFVSGEKFQRSM-TGIMSFSELCQSQGRRPGSRTIKSVFESVDDETKALL 122

Query: 123 NVPVNSSLVAIRRIMLADEVPVMMDYAVFTDAYNFLLQENMDNHSLYATIKAKRDVSFMR 182
           N+      V I RI  AD+V V ++       + FLL E+++NHSLY  ++ K  + F  
Sbjct: 123 NMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLDEDLNNHSLYECLREKYHLWFTH 182

Query: 183 QRKSIQTVFADSAQAQYLEIPVGYPLLLSQGTVVSSTMEIIHYGEQHIVGDK 234
            RK I+ V+A    A YL +  GYPL+L +  ++ +  E+    +Q IVGDK
Sbjct: 183 SRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDNKGELSCVSQQLIVGDK 234


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,270,861,569
Number of extensions: 46586686
Number of successful extensions: 134704
Number of sequences better than 1.0e-05: 3993
Number of HSP's gapped: 132917
Number of HSP's successfully gapped: 3993
Length of query: 239
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 107
Effective length of database: 1,817,122,223
Effective search space: 194432077861
Effective search space used: 194432077861
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)