BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0038.p (179 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3ELG4.1 Q3ELG4_BACTI Transcriptional regulator, PadR family 189 1e-46 C3IJY2.1 C3IJY2_BACTU Transcriptional regulator, PadR family dom... 189 1e-46 B7H7X8.1 B7H7X8_BACC4 Putative uncharacterized protein 189 1e-46 C3FWR2.1 C3FWR2_BACTB Transcriptional regulator, PadR family dom... 189 1e-46 C3D286.1 C3D286_BACTU Transcriptional regulator, PadR family dom... 189 1e-46 >Q3ELG4.1 Q3ELG4_BACTI Transcriptional regulator, PadR family Length = 165 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 125/168 (74%), Gaps = 3/168 (1%) Query: 4 MYADILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKV 63 MY DIL+L +L GPKHGYEIKKN+Q LGE+FE+N+N+LYPALRRF+ MGA+TK++ K Sbjct: 1 MYVDILLLAELTTGPKHGYEIKKNVQNRLGENFELNHNMLYPALRRFENMGAITKKIHKQ 60 Query: 64 DGKPDRHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFDRLEPELQLDILQKRL 123 GKP+R++Y +T+TGEE+F E++RDFP K A N EFLVR+ALF++L+ E + +IL R Sbjct: 61 VGKPNRNMYDITETGEEIFSEMLRDFPEKLATNNAEFLVRIALFEKLDYEARKEILTIRQ 120 Query: 124 SVLEEELKHSRQYDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLIDEV 171 +VL +L + ++ S FITEVI F K++ EHE W+ L+ ++ Sbjct: 121 NVLHNQLTAIQSLEVTSS---FITEVIEFSKSRIEHELTWITSLMKKI 165 >C3IJY2.1 C3IJY2_BACTU Transcriptional regulator, PadR family domain protein Length = 165 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 125/168 (74%), Gaps = 3/168 (1%) Query: 4 MYADILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKV 63 MY DIL+L +L GPKHGYEIKKN+Q LGE+FE+N+N+LYPALRRF+ MGA+TK++ K Sbjct: 1 MYVDILLLAELTTGPKHGYEIKKNVQNRLGENFELNHNMLYPALRRFENMGAITKKIHKQ 60 Query: 64 DGKPDRHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFDRLEPELQLDILQKRL 123 GKP+R++Y +T+TGEE+F E++RDFP K A N EFLVR+ALF++L+ E + +IL R Sbjct: 61 VGKPNRNMYDITETGEEIFSEMLRDFPEKLATNNAEFLVRIALFEKLDYEARKEILTIRQ 120 Query: 124 SVLEEELKHSRQYDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLIDEV 171 +VL +L + ++ S FITEVI F K++ EHE W+ L+ ++ Sbjct: 121 NVLHNQLTAIQSLEVTSS---FITEVIEFSKSRIEHELTWITSLMKKI 165 >B7H7X8.1 B7H7X8_BACC4 Putative uncharacterized protein Length = 165 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 126/168 (75%), Gaps = 3/168 (1%) Query: 4 MYADILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKV 63 MY DIL+L +L GPKHGYEIKKN+Q LGE+FE+N+N+LYPALRRF+ MGA+TK++ K Sbjct: 1 MYVDILLLAELTTGPKHGYEIKKNVQNRLGENFELNHNMLYPALRRFENMGAITKKIHKQ 60 Query: 64 DGKPDRHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFDRLEPELQLDILQKRL 123 GKP+R++Y +T+TGEE+F E++R+FP K A N EFLVR+ALF++L+ E + +IL R Sbjct: 61 VGKPNRNMYDITETGEEIFSEMLREFPEKLATNNTEFLVRIALFEKLDYEDRKEILTVRQ 120 Query: 124 SVLEEELKHSRQYDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLIDEV 171 +VL +L + D+ S FITEVI F K++ EHE +W+ L+ ++ Sbjct: 121 NVLHNQLTAIQSLDVTSS---FITEVIEFSKSRIEHELSWITSLMKKI 165 >C3FWR2.1 C3FWR2_BACTB Transcriptional regulator, PadR family domain protein Length = 165 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 126/168 (75%), Gaps = 3/168 (1%) Query: 4 MYADILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKV 63 MY DIL+L +L GPKHGYEIKKN+Q LGE+FE+N+N+LYPALRRF+ MGA+TK++ K Sbjct: 1 MYVDILLLAELTTGPKHGYEIKKNVQNRLGENFELNHNMLYPALRRFENMGAITKKIHKQ 60 Query: 64 DGKPDRHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFDRLEPELQLDILQKRL 123 GKP+R++Y +T+TGEE+F E++R+FP K A N EFLVR+ALF++L+ E + +IL R Sbjct: 61 VGKPNRNMYDITETGEEIFSEMLREFPEKLATNNTEFLVRIALFEKLDYEDRKEILTVRQ 120 Query: 124 SVLEEELKHSRQYDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLIDEV 171 +VL +L + D+ S FITEVI F K++ EHE +W+ L+ ++ Sbjct: 121 NVLHNQLTAIQSLDVTSS---FITEVIEFSKSRIEHELSWITSLMKKI 165 >C3D286.1 C3D286_BACTU Transcriptional regulator, PadR family domain protein Length = 165 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 89/168 (52%), Positives = 126/168 (75%), Gaps = 3/168 (1%) Query: 4 MYADILILGQLLKGPKHGYEIKKNIQEALGESFEINNNLLYPALRRFQEMGAMTKEVEKV 63 MY DIL+L +L GPKHGYEIKKN+Q LGE+FE+N+N+LYPALRRF+ MGA+TK++ K Sbjct: 1 MYVDILLLAELTTGPKHGYEIKKNVQNRLGENFELNHNMLYPALRRFENMGAITKKIHKQ 60 Query: 64 DGKPDRHVYLLTDTGEEVFIELIRDFPRKAAANPMEFLVRVALFDRLEPELQLDILQKRL 123 GKP+R++Y +T+TGEE+F E++R+FP K A N EFLVR+ALF++L+ E + +IL R Sbjct: 61 VGKPNRNMYDITETGEEIFSEMLREFPEKLATNNTEFLVRIALFEKLDYEDRKEILTVRQ 120 Query: 124 SVLEEELKHSRQYDLGQSRNRFITEVIRFKKTQTEHEWAWVKQLIDEV 171 +VL +L + D+ S FITEVI F K++ EHE +W+ L+ ++ Sbjct: 121 NVLHNQLTAIQSLDVTSS---FITEVIEFSKSRIEHELSWITSLMKKI 165 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,022,107,477 Number of extensions: 38840119 Number of successful extensions: 108544 Number of sequences better than 1.0e-05: 254 Number of HSP's gapped: 108840 Number of HSP's successfully gapped: 254 Length of query: 179 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 52 Effective length of database: 1,864,227,298 Effective search space: 96939819496 Effective search space used: 96939819496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)