BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0027.p (529 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF50.1 B3KF50_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 694 0.0 Q1QYF9.1 Q1QYF9_CHRSD Alpha-L-arabinofuranosidase EC=3.2.1.55 655 0.0 Q9K6P5.1 Q9K6P5_BACHD Xylan beta-1,4-xylosidase EC=3.2.1.37 654 0.0 A8VR97.1 A8VR97_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 603 e-170 C1XN14.1 C1XN14_MEIRU Beta-xylosidase 598 e-169 >B3KF50.1 B3KF50_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 524 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/525 (64%), Positives = 398/525 (75%), Gaps = 2/525 (0%) Query: 1 MNTIVNPVLRGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLKRPLDRIS 60 MN I NPVLRGF+PDPSI RAG+DYYIATSTFEWFPGV+IHHSRDLVHW+ ++ PL R S Sbjct: 1 MNMITNPVLRGFHPDPSICRAGEDYYIATSTFEWFPGVRIHHSRDLVHWKPIQSPLSRTS 60 Query: 61 QLNMQGNGDSDGVWAPCLTYDDGLFYLIYTDVKSHKGAFKDTHNYLVTAADIEGPWSEPV 120 QL+M+GN DS GVWAPCL+YD+G+FYLIYTDVKS GAFKDTHNYLVTA DIEGPWSEPV Sbjct: 61 QLHMEGNIDSGGVWAPCLSYDNGVFYLIYTDVKSRIGAFKDTHNYLVTAKDIEGPWSEPV 120 Query: 121 YLNSSGFDPSLFHDDDGRKWLLNMRWDFRKEKNKFGGIVIQEYSQTEGRLIGPVXXXXXX 180 YLNSSGFDPSLFHD+DGRKWL+NM WD RK KN+F GIV+QE+S E +LIGP Sbjct: 121 YLNSSGFDPSLFHDEDGRKWLVNMIWDHRKGKNRFSGIVLQEFSVQEQKLIGPAVNIFKG 180 Query: 181 XXXXXXXXPHLYKQNGYYYLITAEGGTRYKHAVTVARAALLMGPYEIDPLNPMLTSSGNP 240 PHLYK +YYLITAEGGT Y+HAVTVAR+ +L GPYE+DP NP+LTS G P Sbjct: 181 TELGLTEAPHLYKYKDFYYLITAEGGTGYEHAVTVARSRMLQGPYEVDPANPILTSYGRP 240 Query: 241 ALLLQKAGHASLVETRTGEWYMAHLCARPVDGFHCTLGRETALQKCYWDAEGWLRLEGGG 300 L+LQKAGH SLVET TGEWYMAHL RPV+G CTLGRETALQ+C W +GWLRL G Sbjct: 241 DLMLQKAGHGSLVETHTGEWYMAHLVGRPVNGQFCTLGRETALQQCVWSEDGWLRLASGD 300 Query: 301 NAPSAAVQAXXXXXXXXXXXXXXXXXXXXLLGNQWNTLRIPPDPDWLSLSERQGFLRLKG 360 P V A +L + WNTLRIPPD WLSL+ER G LRL+G Sbjct: 301 RYPEVQVPAPKIMPHPFEPAPKMDHFDQPMLRSDWNTLRIPPDSTWLSLTERPGCLRLRG 360 Query: 361 RESLSSCHRQSLVARRQQVFNIEAETVIEFEPENFQQLAGLILYYNTEDYVYLRITHLEQ 420 ES+SS HRQS+VARR Q F EAET +EF P++ QQ+AGLILYY+T+DY+YLR+T+ E+ Sbjct: 361 MESMSSTHRQSMVARRLQAFACEAETCLEFAPDHPQQMAGLILYYDTKDYLYLRVTYHEE 420 Query: 421 QGRVIGIIQSVHGMYDELLAADLQIPDSGPVRLKAVVNRDRLQFYYAIEDS-SWCPVGEE 479 +G +GIIQS +G+YDELL D+ + +RLK V++ DR FYY ++D SW P G Sbjct: 421 KGLCLGIIQSRYGIYDELL-DDITLKPVNGIRLKVVIDHDRACFYYGLQDDPSWHPAGGW 479 Query: 480 SHILHLSDEAKEPLRFTGTFVGICAQDLSGTRKHADFDYFIYREM 524 I HLSDE+ E +RFTGT++G+C QDL GTRKHADFDYF+Y+EM Sbjct: 480 FDITHLSDESPEYIRFTGTYIGLCVQDLGGTRKHADFDYFVYKEM 524 >Q1QYF9.1 Q1QYF9_CHRSD Alpha-L-arabinofuranosidase EC=3.2.1.55 Length = 523 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/524 (61%), Positives = 383/524 (73%), Gaps = 2/524 (0%) Query: 1 MNTIVNPVLRGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLKRPLDRIS 60 M I NPVL G++PDPS++R DDYYIA STFEWFPGVQIHHSRDLVHWRLL PL R + Sbjct: 1 MAIITNPVLPGYHPDPSMLRVDDDYYIAVSTFEWFPGVQIHHSRDLVHWRLLTYPLTRTT 60 Query: 61 QLNMQGNGDSDGVWAPCLTYDDGLFYLIYTDVKSHKGAFKDTHNYLVTAADIEGPWSEPV 120 QL+M GN DS GVWAPCL++ DG+FYLIYTDVKS KGAFKDTHNYLVTA +IEGPWS+PV Sbjct: 61 QLDMVGNIDSGGVWAPCLSHADGVFYLIYTDVKSRKGAFKDTHNYLVTAENIEGPWSDPV 120 Query: 121 YLNSSGFDPSLFHDDDGRKWLLNMRWDFRKEKNKFGGIVIQEYSQTEGRLIGPVXXXXXX 180 YLNSSGFDPSLFHDDDG WLLNM WDFR+ +N F GI +Q Y + L GPV Sbjct: 121 YLNSSGFDPSLFHDDDGSSWLLNMIWDFRQGENAFAGIALQRYDRISQSLTGPVHNIFKG 180 Query: 181 XXXXXXXXPHLYKQNGYYYLITAEGGTRYKHAVTVARAALLMGPYEIDPLNPMLTSSGNP 240 PHLYK+NGYYYLITAEGGT Y HAVTVAR+A L+GPYE+DP NP+LTS Sbjct: 181 TRLGVTEAPHLYKRNGYYYLITAEGGTGYTHAVTVARSASLLGPYEVDPDNPVLTSDPGQ 240 Query: 241 ALLLQKAGHASLVETRTGEWYMAHLCARPVDGFHCTLGRETALQKCYWDAEGWLRLEGGG 300 A LQKAGHASLVET+ GEWYMAHLCARPV C LGRETA+QKC+W +GWLR+ G Sbjct: 241 AGQLQKAGHASLVETQNGEWYMAHLCARPVVEDKCILGRETAIQKCHWTQDGWLRVMDGP 300 Query: 301 NAPSAAVQAXXXXXXXXXXXXXXXXXXXXLLGNQWNTLRIPPDPDWLSLSERQGFLRLKG 360 + PS V+A L WN+LR P DW+SLSER GFLRLKG Sbjct: 301 H-PSINVEAPKLPPHPMPMENDRDEFSSPELKGYWNSLRRPFGEDWISLSERPGFLRLKG 359 Query: 361 RESLSSCHRQSLVARRQQVFNIEAETVIEFEPENFQQLAGLILYYNTEDYVYLRITHLEQ 420 ES+ S HRQSL+ARR F++E ET +E+ PENFQQ+AGLI+YY+T DY YL +TH E Sbjct: 360 GESMQSMHRQSLLARRLTDFHVEIETQLEYSPENFQQMAGLIIYYDTTDYAYLCVTHHEA 419 Query: 421 QGRVIGIIQSVHGMYDELLAADLQIPDSGPVRLKAVVNRDRLQFYYAIEDSSWCPVGEES 480 +GR +GII+S HG YDELL + +P+ GP+RL A ++ +RLQF+ A D +W +G+ Sbjct: 420 RGRCLGIIESRHGQYDELLTERVALPE-GPIRLMATIHNERLQFHVASVDEAWRTIGDVI 478 Query: 481 HILHLSDEAKEPLRFTGTFVGICAQDLSGTRKHADFDYFIYREM 524 I HLSD+A + +RFTGTFVG+CAQDL G R+ ADF YF YR + Sbjct: 479 DIRHLSDDAADYIRFTGTFVGLCAQDLGGRRRAADFSYFDYRPL 522 >Q9K6P5.1 Q9K6P5_BACHD Xylan beta-1,4-xylosidase EC=3.2.1.37 Length = 528 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/526 (58%), Positives = 387/526 (73%), Gaps = 1/526 (0%) Query: 1 MNTIVNPVLRGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLKRPLDRIS 60 +N I NP+L GF+PDPSIVR GDDYYIATSTFEWFPGV+IHHSRDL HWR + PL R S Sbjct: 2 VNRIQNPILPGFHPDPSIVRVGDDYYIATSTFEWFPGVRIHHSRDLKHWRFVSSPLTRTS 61 Query: 61 QLNMQGNGDSDGVWAPCLTYDDGLFYLIYTDVKSHKGAFKDTHNYLVTAADIEGPWSEPV 120 QL+M+GN +S G+WAPCL+Y DG FYLIYTDVK GAFKD HNYLVTA +IEGPWS+P+ Sbjct: 62 QLDMKGNMNSGGIWAPCLSYHDGTFYLIYTDVKQWHGAFKDAHNYLVTAQNIEGPWSDPI 121 Query: 121 YLNSSGFDPSLFHDDDGRKWLLNMRWDFRKEKNKFGGIVIQEYSQTEGRLIGPVXXXXXX 180 YLNSSGFDPSLFHDDDGRKWL+NM WD+RK + F GI++QEYS+ E +L+GPV Sbjct: 122 YLNSSGFDPSLFHDDDGRKWLVNMIWDYRKGNHPFAGIILQEYSEAEQKLVGPVKNIYKG 181 Query: 181 XXXXXXXXPHLYKQNGYYYLITAEGGTRYKHAVTVARAALLMGPYEIDPLNPMLTSSGNP 240 PHLYK++GYYYL+ AEGGT Y+HA T+AR+ + GPYE DP P++TS+G P Sbjct: 182 TDIQLTEGPHLYKKDGYYYLLVAEGGTEYEHAATLARSQSIDGPYETDPSYPLVTSTGQP 241 Query: 241 ALLLQKAGHASLVETRTGEWYMAHLCARPVDGFHCTLGRETALQKCYWDAEGWLRLEGGG 300 L LQKAGH SLVET+ GEWY+AHLC RP+ G +CTLGRETA+QK W +GWLR+E GG Sbjct: 242 ELALQKAGHGSLVETQNGEWYLAHLCGRPLKGKYCTLGRETAIQKVNWTEDGWLRIEDGG 301 Query: 301 NAPSAAVQAXXXXXXXXXXXXXXXXXXXXLLGNQWNTLRIPPDPDWLSLSERQGFLRLKG 360 N P V A L +QWNTLRIP DP W SL ER G LRL+G Sbjct: 302 NHPLREVTAPDLPEHPFEKEPELDDFDAPQLHHQWNTLRIPADPSWCSLEERPGHLRLRG 361 Query: 361 RESLSSCHRQSLVARRQQVFNIEAETVIEFEPENFQQLAGLILYYNTEDYVYLRITHLEQ 420 ESL+S H QSLVARRQQ F+ E ET +E++PE+FQ +AGL++YY+TED+VYL +T E+ Sbjct: 362 MESLTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGLVIYYDTEDHVYLHVTWHEE 421 Query: 421 QGRVIGIIQSVHGMYDELLAADLQIPDSGPVRLKAVVNRDRLQFYYAIE-DSSWCPVGEE 479 +G+ + IIQ+ G YDELLA+ + + + V LK ++R+ + Y+ E ++ W PVG Sbjct: 422 KGKCLQIIQTKGGNYDELLASPIPLAEEKAVYLKGRIHRETMHLYFKQEGEAEWQPVGPT 481 Query: 480 SHILHLSDEAKEPLRFTGTFVGICAQDLSGTRKHADFDYFIYREME 525 + H+SD++ + +RFTGTFVG+ QDLSGT+K ADFDYF Y+E++ Sbjct: 482 IDVTHMSDDSAKQVRFTGTFVGMATQDLSGTKKPADFDYFRYKELD 527 >A8VR97.1 A8VR97_9BACI Alpha-N-arabinofuranosidase EC=3.2.1.55 Length = 526 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 289/525 (55%), Positives = 365/525 (69%), Gaps = 2/525 (0%) Query: 1 MNTIVNPVLRGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLKRPLDRIS 60 M I NP+L GF+ DPSI R GDD+YIATSTF+WFPGV+IHHSRDL HWR + PLDR+S Sbjct: 1 MTMITNPILPGFHADPSICRVGDDFYIATSTFDWFPGVRIHHSRDLKHWRHIASPLDRVS 60 Query: 61 QLNMQGNGDSDGVWAPCLTYDDGLFYLIYTDVKSHKGAFKDTHNYLVTAADIEGPWSEPV 120 L+++GN +S GVWAPCL+Y DGLFYLIYTDVK GAFKDTHNYLVTA IEGPWSEP+ Sbjct: 61 LLDLKGNMNSGGVWAPCLSYSDGLFYLIYTDVKQWHGAFKDTHNYLVTAPSIEGPWSEPI 120 Query: 121 YLNSSGFDPSLFHDDDGRKWLLNMRWDFRKEKNKFGGIVIQEYSQTEGRLIGPVXXXXXX 180 YLNS+GFDPSLFHDDDGRKWL+NM WDFRK+++ F GIV+QEYS E +L GPV Sbjct: 121 YLNSNGFDPSLFHDDDGRKWLVNMLWDFRKDRHPFAGIVLQEYSPLEQKLTGPVKMIYEG 180 Query: 181 XXXXXXXXPHLYKQNGYYYLITAEGGTRYKHAVTVARAALLMGPYEIDPLNPMLTSSGNP 240 PHLYK+NGYYYL AEGGT+Y+HA TVAR+ + GPYE DP P +T+ P Sbjct: 181 TEIKLTEGPHLYKRNGYYYLFVAEGGTQYEHAETVARSKAIDGPYETDPHYPFITAWKKP 240 Query: 241 ALLLQKAGHASLVETRTGEWYMAHLCARPVDGFHCTLGRETALQKCYWDAEGWLRLEGGG 300 L +QK+GH SLV+T GEWY HL RPV+G +CTLGRET +QK W + W+RL G Sbjct: 241 HLPIQKSGHGSLVDTPEGEWYFVHLGGRPVNGKYCTLGRETFIQKAVWTDDDWIRLADGS 300 Query: 301 NAPSAAVQA-XXXXXXXXXXXXXXXXXXXXLLGNQWNTLRIPPDPDWLSLSERQGFLRLK 359 +PS V+ L WN+LRIP PDW+SL+ER G LRLK Sbjct: 301 QSPSLEVEGPTLPDHPFEAEPVIDDFDDDSLFPGWWNSLRIPMTPDWVSLTERPGHLRLK 360 Query: 360 GRESLSSCHRQSLVARRQQVFNIEAETVIEFEPENFQQLAGLILYYNTEDYVYLRITHLE 419 G ES++S H Q+L+ARRQ F ET ++++PE+FQ + G+ ++Y+T D++YL IT Sbjct: 361 GMESMTSLHSQALIARRQTDFQCTIETALDYQPEHFQHMGGMTVFYDTTDFLYLHITAHP 420 Query: 420 QQGRVIGIIQSVHGMYDELLAADLQIPDSGPVRLKAVVNRDRLQFYYAIEDS-SWCPVGE 478 +GRV+ I+Q G YDE+L + I SG V+LK +++ D +QFYY +D+ W +G Sbjct: 421 VKGRVLQIMQMTDGEYDEVLLSPQTITPSGTVKLKGIIDIDHVQFYYMDQDTPDWVAIGP 480 Query: 479 ESHILHLSDEAKEPLRFTGTFVGICAQDLSGTRKHADFDYFIYRE 523 + H+SD++ +RFTGTFVG+ QDLSGTRK DFDYF Y + Sbjct: 481 ALDVTHMSDDSAPDVRFTGTFVGMATQDLSGTRKPCDFDYFKYEK 525 >C1XN14.1 C1XN14_MEIRU Beta-xylosidase Length = 532 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 303/532 (56%), Positives = 364/532 (68%), Gaps = 7/532 (1%) Query: 1 MNTIVNPVLRGFNPDPSIVRAGDDYYIATSTFEWFPGVQIHHSRDLVHWRLLKRPLDRIS 60 M I+NP+LRGF+PDPSI+R GDDY+IATSTFEW+PGV++HHSRDLVHWR + L R S Sbjct: 1 MTRILNPILRGFHPDPSILRVGDDYFIATSTFEWWPGVRLHHSRDLVHWRPIGYALTRTS 60 Query: 61 QLNMQGNGDSDGVWAPCLTYDDGLFYLIYTDVKS--HKGAFKDTHNYLVTAADIEGPWSE 118 QL M GN DS G+WAPCL++D FYLIYTDVK+ + FKD HNYLVTA IEGPWSE Sbjct: 61 QLEMLGNPDSGGIWAPCLSHDGAQFYLIYTDVKTWGNGEVFKDAHNYLVTAPSIEGPWSE 120 Query: 119 PVYLNSSGFDPSLFHDDDGRKWLLNMRWDFRKEKNKFGGIVIQEYSQTEGRLIGPVXXXX 178 PVYLNSSGFDPSLFHD+DGRKWLLNMRWD RK +N F GI++QEY + RL+GPV Sbjct: 121 PVYLNSSGFDPSLFHDEDGRKWLLNMRWDHRKGRNAFAGILLQEYDPQQKRLVGPVHNIF 180 Query: 179 XXXXXXXXXXPHLYKQNGYYYLITAEGGTRYKHAVTVARAALLMGPYEIDPLNPMLTSSG 238 PHLYK++G+YYL+ AEGGT Y HAVTVAR+ + GPYE+DP P LT+ G Sbjct: 181 RGTPLGVTEGPHLYKKDGWYYLVVAEGGTTYAHAVTVARSQRIEGPYEVDPCYPTLTARG 240 Query: 239 NPALLLQKAGHASLVETRTGEWYMAHLCARPVDG-----FHCTLGRETALQKCYWDAEGW 293 +P L LQKAGHASLV+T+ GEWYMAHL RP++ HC LGRETALQK W +GW Sbjct: 241 HPELPLQKAGHASLVQTQQGEWYMAHLVGRPLEPPQALRRHCPLGRETALQKIRWSPDGW 300 Query: 294 LRLEGGGNAPSAAVQAXXXXXXXXXXXXXXXXXXXXLLGNQWNTLRIPPDPDWLSLSERQ 353 RL G N P+ V+A L + TLR PPDP WLSL+ER Sbjct: 301 PRLWHGSNTPALEVEAPALPAHPWPKEPERDDFEAPTLSLHFQTLRHPPDPSWLSLTERP 360 Query: 354 GFLRLKGRESLSSCHRQSLVARRQQVFNIEAETVIEFEPENFQQLAGLILYYNTEDYVYL 413 +LRL GRESLSS HRQSLVARR Q F EAETV+EFEP++FQQ+AGL+ YY+T ++VYL Sbjct: 361 SYLRLFGRESLSSRHRQSLVARRLQHFYAEAETVLEFEPQHFQQMAGLVCYYDTGNWVYL 420 Query: 414 RITHLEQQGRVIGIIQSVHGMYDELLAADLQIPDSGPVRLKAVVNRDRLQFYYAIEDSSW 473 R++ E G+ + I+ +G YDE L +L I V LK RD F Y+ W Sbjct: 421 RVSRDEALGKTLSILTCDNGHYDEPLDGELGIEGWSRVYLKVRYQRDTFGFAYSANGLDW 480 Query: 474 CPVGEESHILHLSDEAKEPLRFTGTFVGICAQDLSGTRKHADFDYFIYREME 525 + LSD+ L FTGTF+G+CAQDLSG R HADFDYF+YR +E Sbjct: 481 SEIPLRFPAYKLSDDHCRGLGFTGTFIGLCAQDLSGARLHADFDYFVYRGLE 532 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,272,549,622 Number of extensions: 135354513 Number of successful extensions: 246931 Number of sequences better than 1.0e-05: 560 Number of HSP's gapped: 245072 Number of HSP's successfully gapped: 619 Length of query: 529 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 388 Effective length of database: 1,732,333,088 Effective search space: 672145238144 Effective search space used: 672145238144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)