BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0018.p (249 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJI5.1 B3KJI5_9BACI Putative ABC transporter, permease 298 3e-79 A0RCQ1.1 A0RCQ1_BACAH Possible ABC transporter, permease 296 8e-79 B3ZPE4.1 B3ZPE4_BACCE Cdd3 296 8e-79 Q4MHT0.1 Q4MHT0_BACCE Cdd3 283 1e-74 C2NG86.1 C2NG86_BACCE ABC transporter, permease 270 1e-70 >B3KJI5.1 B3KJI5_9BACI Putative ABC transporter, permease Length = 250 Score = 298 bits (762), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 143/249 (57%), Positives = 174/249 (69%) Query: 1 MKALSLEYYKIRRRKVWAMLTLFLAAELGWASMSMGISISRSAANATWEALIFSLSSMNG 60 +K L LEYYKIRR+K+ M+ LFL E+ WA MS+ SI+ + +A WE++ FS+SSMNG Sbjct: 2 IKLLGLEYYKIRRKKIGIMMILFLVVEMLWAFMSVSRSIASNPDHAVWESVFFSISSMNG 61 Query: 61 LFLPILSAIVVSRICDMEHKGDTWKMLLTTSVGRSSIYAAKYICAGSLMLYGILAQAVFI 120 LF+PI+SA+VVSRICDMEHKG TWKML T+VGR +YA KYIC SL+LYGI QA+FI Sbjct: 62 LFMPIMSAVVVSRICDMEHKGSTWKMLAATNVGRGRLYATKYICTNSLILYGIGVQALFI 121 Query: 121 VGFGVLHKLDGPLPVALLLQFAAGTLSANLLITAMQQWISLAVKNQAFALCLGMLGAFLG 180 + FG+ G LP LL +F GTL L +TA+QQWIS A+KNQAFALCLGMLG F+G Sbjct: 122 IVFGLTKDFPGTLPSDLLFRFVGGTLLTTLAVTALQQWISFAIKNQAFALCLGMLGGFIG 181 Query: 181 TTASLFPAAVRHVIVWSYYLDLSPVTYVYKASSGTYITGTMPXXXXXXXXXXXXXXXXXG 240 TA LFPAA+RH+ +WSYYLDLSPVTY Y S+ YI G Sbjct: 182 MTAGLFPAAIRHLFIWSYYLDLSPVTYRYAESASVYIVQPESVGIVLGSLIMTLLFYFVG 241 Query: 241 NTHISRQEI 249 N H+SRQEI Sbjct: 242 NFHVSRQEI 250 >A0RCQ1.1 A0RCQ1_BACAH Possible ABC transporter, permease Length = 250 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 178/249 (71%) Query: 1 MKALSLEYYKIRRRKVWAMLTLFLAAELGWASMSMGISISRSAANATWEALIFSLSSMNG 60 +K L LEY+KIRR+K+W M+ LFL E+ WA MS+ SI+ + N WEA+ FS+SSMNG Sbjct: 2 IKLLGLEYFKIRRKKIWIMIILFLIVEMLWAFMSISRSIASNPDNRVWEAIFFSISSMNG 61 Query: 61 LFLPILSAIVVSRICDMEHKGDTWKMLLTTSVGRSSIYAAKYICAGSLMLYGILAQAVFI 120 LF+PI+SA+V SRICDMEHKG TWKML T+V R +YAAKYIC SL+LYGI AQ +FI Sbjct: 62 LFMPIISAVVASRICDMEHKGSTWKMLAATNVERGQLYAAKYICINSLLLYGIFAQVLFI 121 Query: 121 VGFGVLHKLDGPLPVALLLQFAAGTLSANLLITAMQQWISLAVKNQAFALCLGMLGAFLG 180 + FG+++ G +P+ LL++F G L L +TA+QQWIS ++KNQ+FALCLGMLG F+G Sbjct: 122 IVFGLINDFPGTIPIGLLIRFIGGNLLTTLAVTALQQWISFSIKNQSFALCLGMLGGFIG 181 Query: 181 TTASLFPAAVRHVIVWSYYLDLSPVTYVYKASSGTYITGTMPXXXXXXXXXXXXXXXXXG 240 TA LFPAA+RH+ +WSYYL+LSPVTY+Y S+G+Y+ + G Sbjct: 182 MTAGLFPAAIRHIFIWSYYLELSPVTYLYAESTGSYMIQPVSFGIVVGALIMTVLFYFAG 241 Query: 241 NTHISRQEI 249 +SR+EI Sbjct: 242 RIQVSRKEI 250 >B3ZPE4.1 B3ZPE4_BACCE Cdd3 Length = 250 Score = 296 bits (759), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 178/249 (71%) Query: 1 MKALSLEYYKIRRRKVWAMLTLFLAAELGWASMSMGISISRSAANATWEALIFSLSSMNG 60 +K L LEY+KIRR+K+W M+ LFL E+ WA MS+ SI+ + N WEA+ FS+SSMNG Sbjct: 2 IKLLGLEYFKIRRKKIWIMIILFLIVEMLWAFMSISRSIASNPDNRVWEAIFFSISSMNG 61 Query: 61 LFLPILSAIVVSRICDMEHKGDTWKMLLTTSVGRSSIYAAKYICAGSLMLYGILAQAVFI 120 LF+PI+SA+V SRICDMEHKG TWKML T+V R +YAAKYIC SL+LYGI AQ +FI Sbjct: 62 LFMPIISAVVASRICDMEHKGSTWKMLAATNVERGQLYAAKYICINSLLLYGIFAQVLFI 121 Query: 121 VGFGVLHKLDGPLPVALLLQFAAGTLSANLLITAMQQWISLAVKNQAFALCLGMLGAFLG 180 + FG+++ G +P+ LL++F G L L +TA+QQWIS ++KNQ+FALCLGMLG F+G Sbjct: 122 IVFGLINDFPGTIPIGLLIRFIGGNLLTTLAVTALQQWISFSIKNQSFALCLGMLGGFIG 181 Query: 181 TTASLFPAAVRHVIVWSYYLDLSPVTYVYKASSGTYITGTMPXXXXXXXXXXXXXXXXXG 240 TA LFPAA+RH+ +WSYYL+LSPVTY+Y S+G+Y+ + G Sbjct: 182 MTAGLFPAAIRHIFIWSYYLELSPVTYLYAESTGSYMIQPVSFGIVVGALIMTVLFYFAG 241 Query: 241 NTHISRQEI 249 +SR+EI Sbjct: 242 RIQVSRKEI 250 >Q4MHT0.1 Q4MHT0_BACCE Cdd3 Length = 250 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 131/249 (52%), Positives = 171/249 (68%) Query: 1 MKALSLEYYKIRRRKVWAMLTLFLAAELGWASMSMGISISRSAANATWEALIFSLSSMNG 60 +K L+LEY+KIRR+K+W M+ LFL E+ WA MS+ SI+ + N WE++ FS+SSMNG Sbjct: 2 IKILALEYFKIRRKKIWTMIILFLIVEMLWAFMSISRSIASNPDNRVWESIFFSISSMNG 61 Query: 61 LFLPILSAIVVSRICDMEHKGDTWKMLLTTSVGRSSIYAAKYICAGSLMLYGILAQAVFI 120 LF+PI+SA+V SRICDMEHKG TWKML+ T+V +YAAKYIC SLML I AQ +FI Sbjct: 62 LFMPIISAVVASRICDMEHKGSTWKMLVATNVEHRQLYAAKYICINSLMLNAIFAQILFI 121 Query: 121 VGFGVLHKLDGPLPVALLLQFAAGTLSANLLITAMQQWISLAVKNQAFALCLGMLGAFLG 180 + FG++ G +P+ LL +F G L L ITA+QQW+S ++KNQ+FALCLGMLG F+G Sbjct: 122 IVFGLIKNFPGTVPIELLTRFIFGNLLTTLAITAIQQWVSFSIKNQSFALCLGMLGGFIG 181 Query: 181 TTASLFPAAVRHVIVWSYYLDLSPVTYVYKASSGTYITGTMPXXXXXXXXXXXXXXXXXG 240 TA LFPAA+RH+ +WSYYL+LSPVTY+Y G Y+ + G Sbjct: 182 MTAGLFPAAIRHIFIWSYYLELSPVTYLYVEPMGFYMIQPVSFRIILGALIMTGLFYFAG 241 Query: 241 NTHISRQEI 249 +S QEI Sbjct: 242 RIQVSHQEI 250 >C2NG86.1 C2NG86_BACCE ABC transporter, permease Length = 231 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 124/231 (53%), Positives = 163/231 (70%) Query: 19 MLTLFLAAELGWASMSMGISISRSAANATWEALIFSLSSMNGLFLPILSAIVVSRICDME 78 M+ LFL E+ WA MS+ SI+ + N WEA+ FS+SSMNGLF+PI+SA+V SRICDME Sbjct: 1 MIILFLIVEMLWAFMSISRSIASNPDNRVWEAIFFSISSMNGLFMPIISAVVASRICDME 60 Query: 79 HKGDTWKMLLTTSVGRSSIYAAKYICAGSLMLYGILAQAVFIVGFGVLHKLDGPLPVALL 138 HKG TWKML T+V R +YAAKYIC SL+LYGI AQ +FI+ FG+++ G +P+ LL Sbjct: 61 HKGSTWKMLAATNVERGQLYAAKYICINSLLLYGIFAQVLFIIVFGLINDFPGTIPIGLL 120 Query: 139 LQFAAGTLSANLLITAMQQWISLAVKNQAFALCLGMLGAFLGTTASLFPAAVRHVIVWSY 198 ++F G L L +TA+QQWIS ++KNQ+FALCLGMLG F+G TA LFPAA+RH+ +WSY Sbjct: 121 IRFIGGNLLTTLAVTALQQWISFSIKNQSFALCLGMLGGFIGMTAGLFPAAIRHIFIWSY 180 Query: 199 YLDLSPVTYVYKASSGTYITGTMPXXXXXXXXXXXXXXXXXGNTHISRQEI 249 YL+LSPVTY+Y S+G+Y+ + G +SR+EI Sbjct: 181 YLELSPVTYLYAESTGSYMIQPVSFGIVVGALIMTVLFYFAGRIQVSRKEI 231 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,236,734,443 Number of extensions: 43349593 Number of successful extensions: 157748 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 157728 Number of HSP's successfully gapped: 101 Length of query: 249 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 117 Effective length of database: 1,817,122,223 Effective search space: 212603300091 Effective search space used: 212603300091 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)