BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0017.p (342 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3ZPE5.1 B3ZPE5_BACCE Bacitracin transport ATP-binding protein BcrA 379 e-103 A0RCQ0.1 A0RCQ0_BACAH ABC transporter, ATP-binding protein 376 e-102 Q4MHT1.1 Q4MHT1_BACCE Cdd4 373 e-101 B3KJI4.1 B3KJI4_9BACI ABC transporter related 367 e-100 C0ZE63.1 C0ZE63_BREBN Probable ABC transporter ATP binding protein 352 4e-95 >B3ZPE5.1 B3ZPE5_BACCE Bacitracin transport ATP-binding protein BcrA Length = 305 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 189/305 (61%), Positives = 234/305 (76%) Query: 38 MNAYPIIETQHLTKSYGGTPRVDHINLAVQQGEIFGFLGPNGAXXXXXXXXXXXXIQPTK 97 M I++TQ+L+K+YG V+ ++L VQ+GEI+GFLGPNGA I+P++ Sbjct: 1 MGVSAIVQTQNLSKTYGAINCVNKVDLHVQEGEIYGFLGPNGAGKTTTLKMLLGLIKPSE 60 Query: 98 GSVKLFGKELRNNRESILNQTGSLIESPSYYGHLTGLENLRVMQRLRSLPAKNIDKVLQI 157 G++K+FG+ L NR SIL +TGSLIESPSYYGHLTGLEN++VMQRLR++P KNID+VL+I Sbjct: 61 GTIKIFGESLDKNRASILQRTGSLIESPSYYGHLTGLENMKVMQRLRNVPDKNIDEVLRI 120 Query: 158 VRLDNHKHKPARQYSLGMKQRLGLAMALLAFPSLLILDEPTNGLDPAGIGEIRELIQSLP 217 VRL+N K K A QYSLGMKQRLG+AMALLAFP LLILDEPTNGLDPAGIGEIRELI+SLP Sbjct: 121 VRLENQKDKKAEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKSLP 180 Query: 218 AQYGMTILVSSHLLSEIEQIATSVGIISEGKLLFQGTMAALQAQNQAAIHFQTHDPAMAV 277 +YG+TIL+SSHLLSEIEQIATSVGIISEG LLFQG+M +L+ +N+ AI +T D A A Sbjct: 181 ERYGITILLSSHLLSEIEQIATSVGIISEGNLLFQGSMTSLRKKNRNAIFMKTGDNAKAE 240 Query: 278 KVLAAHGYRPRIQERLLVFGAMQDSEVARINEILXXXXXXXXXXEAYKKSLEDIFLDLTG 337 ++L GY P + G +QD+EVA +N++L E KKSLEDIFL+ TG Sbjct: 241 QLLFNQGYSPINNGSRIELGNLQDTEVAEMNKLLVEHEIAVTRIEEQKKSLEDIFLEFTG 300 Query: 338 KERSL 342 KERSL Sbjct: 301 KERSL 305 >A0RCQ0.1 A0RCQ0_BACAH ABC transporter, ATP-binding protein Length = 311 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/305 (61%), Positives = 233/305 (76%) Query: 38 MNAYPIIETQHLTKSYGGTPRVDHINLAVQQGEIFGFLGPNGAXXXXXXXXXXXXIQPTK 97 M I++TQ+L+K+YG V+ ++L VQ+GEI+GFLGPNGA I+ ++ Sbjct: 7 MGVSAIVQTQNLSKTYGAINCVNKVDLHVQEGEIYGFLGPNGAGKTTTLKMLLGLIKASE 66 Query: 98 GSVKLFGKELRNNRESILNQTGSLIESPSYYGHLTGLENLRVMQRLRSLPAKNIDKVLQI 157 G++K+FG+ L NR SIL +TGSLIESPSYYGHLTGLEN++VMQRLR++P KNID+VL+I Sbjct: 67 GTIKIFGESLDKNRASILQRTGSLIESPSYYGHLTGLENMKVMQRLRNVPDKNIDEVLRI 126 Query: 158 VRLDNHKHKPARQYSLGMKQRLGLAMALLAFPSLLILDEPTNGLDPAGIGEIRELIQSLP 217 VRL+N K K A QYSLGMKQRLG+AMALLAFP LLILDEPTNGLDPAGIGEIRELI+SLP Sbjct: 127 VRLENQKDKKAEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKSLP 186 Query: 218 AQYGMTILVSSHLLSEIEQIATSVGIISEGKLLFQGTMAALQAQNQAAIHFQTHDPAMAV 277 +YG+TIL+SSHLLSEIEQIATSVGIISEG LLFQG+M +L+ +N+ AI +T D A A Sbjct: 187 ERYGITILLSSHLLSEIEQIATSVGIISEGNLLFQGSMTSLRKKNRNAIFMKTGDNAKAE 246 Query: 278 KVLAAHGYRPRIQERLLVFGAMQDSEVARINEILXXXXXXXXXXEAYKKSLEDIFLDLTG 337 ++L GY P + G +QD+EVA +N++L E KKSLEDIFL+ TG Sbjct: 247 QLLFNQGYSPINNGSRIELGNLQDTEVAEMNKLLVEHEIAVTRIEEQKKSLEDIFLEFTG 306 Query: 338 KERSL 342 KERSL Sbjct: 307 KERSL 311 >Q4MHT1.1 Q4MHT1_BACCE Cdd4 Length = 305 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 185/305 (60%), Positives = 233/305 (76%) Query: 38 MNAYPIIETQHLTKSYGGTPRVDHINLAVQQGEIFGFLGPNGAXXXXXXXXXXXXIQPTK 97 M+ II+TQ+L+K+YG V+ ++L V +GEI+GFLGPNGA I+P++ Sbjct: 1 MSVSAIIQTQNLSKTYGSINCVNKVDLHVHEGEIYGFLGPNGAGKTTTLKMLLGLIKPSE 60 Query: 98 GSVKLFGKELRNNRESILNQTGSLIESPSYYGHLTGLENLRVMQRLRSLPAKNIDKVLQI 157 G++K+FG+ L+ NR SIL +TGSLIESPSYYGHLTGLEN++VMQRLR++P KNID+ L+I Sbjct: 61 GTIKVFGESLQKNRSSILQRTGSLIESPSYYGHLTGLENMKVMQRLRNVPNKNIDEALRI 120 Query: 158 VRLDNHKHKPARQYSLGMKQRLGLAMALLAFPSLLILDEPTNGLDPAGIGEIRELIQSLP 217 VRL+N K K QYSLGMKQRLG+AMALLAFP LLILDEPTNGLDPAGIGEIRELI+SLP Sbjct: 121 VRLENQKDKKTEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKSLP 180 Query: 218 AQYGMTILVSSHLLSEIEQIATSVGIISEGKLLFQGTMAALQAQNQAAIHFQTHDPAMAV 277 A+YG+TIL+SSHLLSEIEQIATSVGIISEG LLFQG+M L+ +++ AI +T + A A Sbjct: 181 ARYGITILLSSHLLSEIEQIATSVGIISEGNLLFQGSMTTLRKKSRNAIFMKTGNNAKAE 240 Query: 278 KVLAAHGYRPRIQERLLVFGAMQDSEVARINEILXXXXXXXXXXEAYKKSLEDIFLDLTG 337 ++L A GY P + + +QD E+A +N++L E KKSLEDIFL+ TG Sbjct: 241 QLLFAQGYSPINHGKRIELSNLQDKEIAEMNKLLVQHEISVTRIEEQKKSLEDIFLEFTG 300 Query: 338 KERSL 342 KERSL Sbjct: 301 KERSL 305 >B3KJI4.1 B3KJI4_9BACI ABC transporter related Length = 305 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/305 (59%), Positives = 232/305 (76%) Query: 38 MNAYPIIETQHLTKSYGGTPRVDHINLAVQQGEIFGFLGPNGAXXXXXXXXXXXXIQPTK 97 M+A I++TQ+L+K+YG V+ ++L VQ+GEI+GFLGPNGA I+PT+ Sbjct: 1 MSALAIVQTQNLSKTYGANNSVNKVDLRVQEGEIYGFLGPNGAGKTTTLKMLLGLIKPTE 60 Query: 98 GSVKLFGKELRNNRESILNQTGSLIESPSYYGHLTGLENLRVMQRLRSLPAKNIDKVLQI 157 G++ +FG+ L +R SIL +TGSLIESPSYYGHLTGLEN++VMQ LR++P KN+ + L+I Sbjct: 61 GTIHIFGENLSKHRPSILQRTGSLIESPSYYGHLTGLENMKVMQSLRNVPDKNVHEALRI 120 Query: 158 VRLDNHKHKPARQYSLGMKQRLGLAMALLAFPSLLILDEPTNGLDPAGIGEIRELIQSLP 217 VRL+N K+K QYSLGMKQRLG+AMALLAFP LLILDEPTNGLDPAGIGEIRELI+SLP Sbjct: 121 VRLENQKNKKTEQYSLGMKQRLGIAMALLAFPKLLILDEPTNGLDPAGIGEIRELIKSLP 180 Query: 218 AQYGMTILVSSHLLSEIEQIATSVGIISEGKLLFQGTMAALQAQNQAAIHFQTHDPAMAV 277 +YG+T+L+SSHLLSEIEQIATSVGII++G LL+QG+MA+L+ +N+ AI +T D A A Sbjct: 181 ERYGITVLLSSHLLSEIEQIATSVGIITQGNLLYQGSMASLRQKNRNAIFMKTGDNAKAE 240 Query: 278 KVLAAHGYRPRIQERLLVFGAMQDSEVARINEILXXXXXXXXXXEAYKKSLEDIFLDLTG 337 ++L GY P L G +QD+EVA +N +L E KKSLEDIFL+LTG Sbjct: 241 QLLLTQGYSPAQSGSRLELGTLQDTEVAEMNRLLVEHKIEVTRIEEQKKSLEDIFLELTG 300 Query: 338 KERSL 342 K RSL Sbjct: 301 KGRSL 305 >C0ZE63.1 C0ZE63_BREBN Probable ABC transporter ATP binding protein Length = 303 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 178/300 (59%), Positives = 215/300 (71%) Query: 43 IIETQHLTKSYGGTPRVDHINLAVQQGEIFGFLGPNGAXXXXXXXXXXXXIQPTKGSVKL 102 +I T++L+K YGG V +NLAV +GE++GFLGPNGA ++PT+GSV + Sbjct: 4 VIRTENLSKHYGGAYCVQRVNLAVGEGEVYGFLGPNGAGKSTTLKMLLGLVKPTEGSVSV 63 Query: 103 FGKELRNNRESILNQTGSLIESPSYYGHLTGLENLRVMQRLRSLPAKNIDKVLQIVRLDN 162 FGK+ NR IL+QTGSLIE+PSYYGHLTGLEN+RVMQRLR +P K ++K LQIVRL+ Sbjct: 64 FGKDFSRNRLEILSQTGSLIEAPSYYGHLTGLENMRVMQRLRDVPDKQVEKALQIVRLEK 123 Query: 163 HKHKPARQYSLGMKQRLGLAMALLAFPSLLILDEPTNGLDPAGIGEIRELIQSLPAQYGM 222 ++K QYSLGMKQRLG+AMALL FP L+ILDEPTNGLDPAGIGEIRELIQSLP QYGM Sbjct: 124 QQNKKVDQYSLGMKQRLGIAMALLHFPKLVILDEPTNGLDPAGIGEIRELIQSLPHQYGM 183 Query: 223 TILVSSHLLSEIEQIATSVGIISEGKLLFQGTMAALQAQNQAAIHFQTHDPAMAVKVLAA 282 T+L+SSHLLSEIEQ+ATS+GII GKLLFQG+M LQ +Q + +T D A +VL Sbjct: 184 TVLLSSHLLSEIEQVATSIGIIHGGKLLFQGSMEQLQRNSQPRVWMKTQDNDKARRVLQD 243 Query: 283 HGYRPRIQERLLVFGAMQDSEVARINEILXXXXXXXXXXEAYKKSLEDIFLDLTGKERSL 342 P +Q+ LV M D EVA N L E +K+SLE IFL LTGKE SL Sbjct: 244 RELSPSLQDGFLVMEGMGDREVAETNRALMMAGIDVYRIEVHKQSLESIFLSLTGKEGSL 303 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,778,656,402 Number of extensions: 66874949 Number of successful extensions: 392619 Number of sequences better than 1.0e-05: 70293 Number of HSP's gapped: 338748 Number of HSP's successfully gapped: 73391 Length of query: 342 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 206 Effective length of database: 1,779,438,163 Effective search space: 366564261578 Effective search space used: 366564261578 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)