BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0016.p (235 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJI3.1 B3KJI3_9BACI Response regulator receiver 339 2e-91 A0RCQ3.1 A0RCQ3_BACAH Response regulator DrrA 332 2e-89 C2NG89.1 C2NG89_BACCE Response regulator DrrA 332 2e-89 B3ZPE1.1 B3ZPE1_BACCE Response regulator DrrA 329 1e-88 Q4MHS7.1 Q4MHS7_BACCE Response regulator DrrA 325 2e-87 >B3KJI3.1 B3KJI3_9BACI Response regulator receiver Length = 237 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/234 (70%), Positives = 196/234 (83%) Query: 2 MKNKKVMIVEDEPKIREMIELFLRKEGFFRIYAAGDYRTALALCRLEKPDVAILDVMLPD 61 +K+KK++IV+DEP+IR MIE FLRKEGF+RIY AGD +AL++CR KPD+AILDVMLPD Sbjct: 4 LKDKKILIVDDEPEIRIMIERFLRKEGFYRIYMAGDCASALSICREGKPDIAILDVMLPD 63 Query: 62 GDGFSLLSSIRTFSDMPVLFLSAXXXXXXXXXXXXXXXXXYIVKPFLPRELMLRLTAVLK 121 GDGFSLLSSI+ +D+P+LFLSA YIVKPFLPREL+LRL A+LK Sbjct: 64 GDGFSLLSSIKQLTDIPILFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLMAILK 123 Query: 122 RVYASQIPERLPVFRLGEQVVDLEGAVVQKEGRELPLTAKEHAILIKLYEDRGRIVTSDA 181 RVY+S + ERLPVFRLGEQ +DLE AVV + +EL LTAKEHAIL+KLYE++GRIVTSDA Sbjct: 124 RVYSSPMAERLPVFRLGEQTIDLESAVVHRNRKELSLTAKEHAILVKLYENQGRIVTSDA 183 Query: 182 VCQAVWGDDSYGYENTLMVHMRRIREKIEADPSKPAYLLTVRGLGYKLIVQEPR 235 +CQAVWGDDSYGYENTLMVH+RR+REKIE DPSKP +LLTVRGLGYKL+V+E R Sbjct: 184 LCQAVWGDDSYGYENTLMVHVRRVREKIERDPSKPIHLLTVRGLGYKLLVKEIR 237 >A0RCQ3.1 A0RCQ3_BACAH Response regulator DrrA Length = 237 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 190/232 (81%) Query: 2 MKNKKVMIVEDEPKIREMIELFLRKEGFFRIYAAGDYRTALALCRLEKPDVAILDVMLPD 61 +KNKK++IV+DE +IR MIE FLRKEGFFRIY A D +AL+ C+++ PD+ ILDVMLPD Sbjct: 4 LKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPD 63 Query: 62 GDGFSLLSSIRTFSDMPVLFLSAXXXXXXXXXXXXXXXXXYIVKPFLPRELMLRLTAVLK 121 GDGFSLLSSIR FS PVLFLSA Y+VKPFLPREL+LRL A+LK Sbjct: 64 GDGFSLLSSIRKFSSTPVLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILK 123 Query: 122 RVYASQIPERLPVFRLGEQVVDLEGAVVQKEGRELPLTAKEHAILIKLYEDRGRIVTSDA 181 RVY+S + ERL +FRLGEQ+VDLE AVV + +E+PLTAKEHAIL+KLYE++GRI+T+DA Sbjct: 124 RVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPLTAKEHAILVKLYENQGRIITNDA 183 Query: 182 VCQAVWGDDSYGYENTLMVHMRRIREKIEADPSKPAYLLTVRGLGYKLIVQE 233 +CQAVWGDDSYG ENTLMVH+RRIREKIE DPSKP YLLT RGLGYKL+V+E Sbjct: 184 LCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKE 235 >C2NG89.1 C2NG89_BACCE Response regulator DrrA Length = 237 Score = 332 bits (851), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 190/232 (81%) Query: 2 MKNKKVMIVEDEPKIREMIELFLRKEGFFRIYAAGDYRTALALCRLEKPDVAILDVMLPD 61 +KNKK++IV+DE +IR MIE FLRKEGFFRIY A D +AL+ C+++ PD+ ILDVMLPD Sbjct: 4 LKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPD 63 Query: 62 GDGFSLLSSIRTFSDMPVLFLSAXXXXXXXXXXXXXXXXXYIVKPFLPRELMLRLTAVLK 121 GDGFSLLSSIR FS PVLFLSA Y+VKPFLPREL+LRL A+LK Sbjct: 64 GDGFSLLSSIRKFSSTPVLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILK 123 Query: 122 RVYASQIPERLPVFRLGEQVVDLEGAVVQKEGRELPLTAKEHAILIKLYEDRGRIVTSDA 181 RVY+S + ERL +FRLGEQ+VDLE AVV + +E+PLTAKEHAIL+KLYE++GRI+T+DA Sbjct: 124 RVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPLTAKEHAILVKLYENQGRIITNDA 183 Query: 182 VCQAVWGDDSYGYENTLMVHMRRIREKIEADPSKPAYLLTVRGLGYKLIVQE 233 +CQAVWGDDSYG ENTLMVH+RRIREKIE DPSKP YLLT RGLGYKL+V+E Sbjct: 184 LCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKE 235 >B3ZPE1.1 B3ZPE1_BACCE Response regulator DrrA Length = 237 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 159/232 (68%), Positives = 189/232 (81%) Query: 2 MKNKKVMIVEDEPKIREMIELFLRKEGFFRIYAAGDYRTALALCRLEKPDVAILDVMLPD 61 +KNKK++IV+DE +IR MIE FLRKEGFFRIY A D +AL+ C+++ PD+ ILDVMLPD Sbjct: 4 LKNKKILIVDDEQEIRIMIERFLRKEGFFRIYTAVDCASALSFCQVDNPDIVILDVMLPD 63 Query: 62 GDGFSLLSSIRTFSDMPVLFLSAXXXXXXXXXXXXXXXXXYIVKPFLPRELMLRLTAVLK 121 GDGFSLLSSIR S PVLFLSA Y+VKPFLPREL+LRL A+LK Sbjct: 64 GDGFSLLSSIRKISSTPVLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELVLRLMAILK 123 Query: 122 RVYASQIPERLPVFRLGEQVVDLEGAVVQKEGRELPLTAKEHAILIKLYEDRGRIVTSDA 181 RVY+S + ERL +FRLGEQ+VDLE AVV + +E+PLTAKEHAIL+KLYE++GRI+T+DA Sbjct: 124 RVYSSSVTERLSIFRLGEQIVDLESAVVHRGQKEMPLTAKEHAILVKLYENQGRIITNDA 183 Query: 182 VCQAVWGDDSYGYENTLMVHMRRIREKIEADPSKPAYLLTVRGLGYKLIVQE 233 +CQAVWGDDSYG ENTLMVH+RRIREKIE DPSKP YLLT RGLGYKL+V+E Sbjct: 184 LCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIYLLTFRGLGYKLLVKE 235 >Q4MHS7.1 Q4MHS7_BACCE Response regulator DrrA Length = 237 Score = 325 bits (833), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 188/232 (81%) Query: 2 MKNKKVMIVEDEPKIREMIELFLRKEGFFRIYAAGDYRTALALCRLEKPDVAILDVMLPD 61 +K+KK++IV+DE +IR MIE LRKEGFFRIY GD +AL+ C+ PD+AILDVMLPD Sbjct: 4 LKDKKILIVDDEHEIRIMIEKLLRKEGFFRIYTTGDCTSALSFCQTNNPDIAILDVMLPD 63 Query: 62 GDGFSLLSSIRTFSDMPVLFLSAXXXXXXXXXXXXXXXXXYIVKPFLPRELMLRLTAVLK 121 GDGFSLLSSIR FS +PVLFLSA Y+VKPFLPREL+LRL A+LK Sbjct: 64 GDGFSLLSSIRQFSTIPVLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELVLRLIAILK 123 Query: 122 RVYASQIPERLPVFRLGEQVVDLEGAVVQKEGRELPLTAKEHAILIKLYEDRGRIVTSDA 181 RVY+S I +RL F+LGEQ+VDLE AVV + +E+PLTAKEHAIL+KLYE++GRI+T+DA Sbjct: 124 RVYSSSIADRLSTFKLGEQIVDLESAVVYRGQKEIPLTAKEHAILVKLYENQGRIITNDA 183 Query: 182 VCQAVWGDDSYGYENTLMVHMRRIREKIEADPSKPAYLLTVRGLGYKLIVQE 233 +CQAVWGDDSYG ENTLMVH+RRIREKIE DPSKP +LLT RGLGYKL+V+E Sbjct: 184 LCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKE 235 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.142 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,236,581,971 Number of extensions: 45569661 Number of successful extensions: 199139 Number of sequences better than 1.0e-05: 18265 Number of HSP's gapped: 165723 Number of HSP's successfully gapped: 18269 Length of query: 235 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 104 Effective length of database: 1,826,543,238 Effective search space: 189960496752 Effective search space used: 189960496752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)