BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0015.p (482 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJI2.1 B3KJI2_9BACI Sensor protein EC=2.7.13.3 433 e-119 A0RCQ4.1 A0RCQ4_BACAH Sensor protein EC=2.7.13.3 426 e-117 C2NG90.1 C2NG90_BACCE Putative uncharacterized protein 426 e-117 C0ZE65.1 C0ZE65_BREBN Two-component sensor histidine kinase EC=2... 422 e-116 Q4MHS6.1 Q4MHS6_BACCE Sensor protein EC=2.7.13.3 419 e-115 >B3KJI2.1 B3KJI2_9BACI Sensor protein EC=2.7.13.3 Length = 469 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 219/459 (47%), Positives = 289/459 (62%), Gaps = 1/459 (0%) Query: 1 MDSAVRILRKFVGXXXXXXXXXXXXXXXXXXXXIFKETHQETSPETVVREIAAGLKTAAG 60 M+ +RILR+FV +F E Q +SPE +V+++ GL+ Sbjct: 1 MEGIIRILRRFVAATLLFSLFLLLFNFVLLGTLVFTENDQNSSPEGIVKQVTQGLEMKKD 60 Query: 61 KHALEPEXXXXXXXXXXXXXXXNQEGKVQWSEQLPAEIPRSYSILEVAKFSRYYLQGYPV 120 L+ + + G V W +P ++P SY++++VAKFSRYYL+ YPV Sbjct: 61 SFQLDGQATELLQQNHAWAMLLGENGHVIWEYHIPHDVPDSYNLVDVAKFSRYYLKDYPV 120 Query: 121 YIWEHPEGLLVVGYPKHSYEKYQLEYLTDWXXXXXXXXXXXXXXXXXXXXXXXXFIGTRL 180 Y EH EGL+VVGYPK S+ KYQL++L +W IGTRL Sbjct: 121 YTSEHQEGLMVVGYPKESHWKYQLDFLAEWISSLPLRIVLLLLCNLALALLISIVIGTRL 180 Query: 181 IRGIRPLIDGIHALAKDKPVRVETGGIFSDLSESINLASATLQAKNTALKSRDEARSNWV 240 IR IRPL++G+H LA+++ V+++T GIF DL++S+N ASA LQ K AL+SRDEARSNW+ Sbjct: 181 IRKIRPLVEGVHNLAREQQVQLDTKGIFGDLAQSMNSASAILQNKTAALQSRDEARSNWI 240 Query: 241 AGISHDIRTPLSMILGYASNLEEQVNLTXXXXXXXXXXXXXXXXLRSLVSDLNLVSMLEY 300 AGISHDIRTPLS+ILGYAS +E+Q +L+ LRSLVSDLNLVSMLEY Sbjct: 241 AGISHDIRTPLSLILGYASEMEDQSDLSEEQRHQAGIIRSQGEKLRSLVSDLNLVSMLEY 300 Query: 301 DMQPLQLKPVRLSTLARTVASDIINNGLDERYPIDLSITDESLQVMGDEKLLYRAVSNLV 360 +MQPL LK +RLS L R V ++ +N+GLD+RY I+L + DE+++V GDEKLL RA+SNL Sbjct: 301 EMQPLHLKYIRLSVLGRQVVTEFVNHGLDDRYDIELKLADEAVRVHGDEKLLLRAISNLF 360 Query: 361 QNSVQHNPDGCRIVLRSSRGPEDCCYSLSVSDTGAGIAPEHLPELVLLPYSAGRVHPVRQ 420 QNSV HNP GC+I + +S + Y + V D G GI E L E+ L +SA R P +Q Sbjct: 361 QNSVCHNPQGCKITIETSLSQDRSQYRMIVRDDGRGIPQEQLAEITELYFSARRKRPDQQ 420 Query: 421 GHGLGLPMVARIAEAHKGKLILESGTAQ-GLHATLQFPA 458 GHGLGLPMVARIA+AH G LIL +G Q GL A ++FP Sbjct: 421 GHGLGLPMVARIAKAHHGHLILANGVDQRGLTAIMEFPV 459 >A0RCQ4.1 A0RCQ4_BACAH Sensor protein EC=2.7.13.3 Length = 478 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/459 (47%), Positives = 283/459 (61%), Gaps = 1/459 (0%) Query: 1 MDSAVRILRKFVGXXXXXXXXXXXXXXXXXXXXIFKETHQETSPETVVREIAAGLKTAAG 60 M+ RIL++FV +F ET+Q+ PE ++++I+ L Sbjct: 1 MEGITRILQRFVTTTILISIFVLIFNFVLLGTLVFNETNQQIPPEGLLKKISQNLDKQDN 60 Query: 61 KHALEPEXXXXXXXXXXXXXXXNQEGKVQWSEQLPAEIPRSYSILEVAKFSRYYLQGYPV 120 + L+ +++G VQW LP ++PR Y++++VAK SRYYL YPV Sbjct: 61 NYHLDENTAKILQHNQAWAMLISEDGHVQWDYHLPNDVPRFYNLVDVAKLSRYYLLQYPV 120 Query: 121 YIWEHPEGLLVVGYPKHSYEKYQLEYLTDWXXXXXXXXXXXXXXXXXXXXXXXXFIGTRL 180 Y WEH L+VVGYPK S+ KYQ +L+DW IGTRL Sbjct: 121 YTWEHENDLIVVGYPKGSHWKYQFTFLSDWLREIPLRLGVLLLFNVGITLLISVVIGTRL 180 Query: 181 IRGIRPLIDGIHALAKDKPVRVETGGIFSDLSESINLASATLQAKNTALKSRDEARSNWV 240 IRGIRPL+ G+H LA+++ V++++ GIF DL++SIN AS LQ K ALK+RDEARSNW+ Sbjct: 181 IRGIRPLVSGVHNLAREELVQLDSKGIFGDLAQSINSASTKLQKKTDALKARDEARSNWI 240 Query: 241 AGISHDIRTPLSMILGYASNLEEQVNLTXXXXXXXXXXXXXXXXLRSLVSDLNLVSMLEY 300 AGISHDIRTPLS+ILGYAS +E+ +L+ LRSLVSDLNLVSMLEY Sbjct: 241 AGISHDIRTPLSIILGYASEMEDNFDLSEDQRRQAGIIRHQGEKLRSLVSDLNLVSMLEY 300 Query: 301 DMQPLQLKPVRLSTLARTVASDIINNGLDERYPIDLSITDESLQVMGDEKLLYRAVSNLV 360 +MQPL LK +RLS LAR VA+D +NNGLD+RY IDL + E+++V+GDEKLL RA+SNLV Sbjct: 301 EMQPLHLKQIRLSVLARQVATDFLNNGLDDRYEIDLKLNVEAVKVIGDEKLLLRAISNLV 360 Query: 361 QNSVQHNPDGCRIVLRSSRGPEDCCYSLSVSDTGAGIAPEHLPELVLLPYSAGRVHPVRQ 420 QNSV HN GC I L +S + Y V D G GI E L E+ LPYS+ R V++ Sbjct: 361 QNSVNHNTQGCVITLETSLSKDRSQYRFIVKDNGRGIPKEKLTEITELPYSSRRKRTVKE 420 Query: 421 GHGLGLPMVARIAEAHKGKLILES-GTAQGLHATLQFPA 458 GHGLG+PMVARI +AH G+L + S G GL ++ PA Sbjct: 421 GHGLGIPMVARIVQAHHGRLFISSNGDRGGLTTVIELPA 459 >C2NG90.1 C2NG90_BACCE Putative uncharacterized protein Length = 478 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/459 (47%), Positives = 283/459 (61%), Gaps = 1/459 (0%) Query: 1 MDSAVRILRKFVGXXXXXXXXXXXXXXXXXXXXIFKETHQETSPETVVREIAAGLKTAAG 60 M+ RIL++FV +F ET+Q+ PE ++++I+ L Sbjct: 1 MEGITRILQRFVTTTILISIFVLIFNFVLLGTLVFNETNQQIPPEGLLKKISQNLDKQDN 60 Query: 61 KHALEPEXXXXXXXXXXXXXXXNQEGKVQWSEQLPAEIPRSYSILEVAKFSRYYLQGYPV 120 + L+ +++G VQW LP ++PR Y++++VAK SRYYL YPV Sbjct: 61 NYHLDENTAKILQHNQAWAMLISEDGHVQWDYHLPNDVPRFYNLVDVAKLSRYYLLQYPV 120 Query: 121 YIWEHPEGLLVVGYPKHSYEKYQLEYLTDWXXXXXXXXXXXXXXXXXXXXXXXXFIGTRL 180 Y WEH L+VVGYPK S+ KYQ +L+DW IGTRL Sbjct: 121 YTWEHENDLIVVGYPKGSHWKYQFTFLSDWLREIPLRLGVLLLFNVGITLLISVVIGTRL 180 Query: 181 IRGIRPLIDGIHALAKDKPVRVETGGIFSDLSESINLASATLQAKNTALKSRDEARSNWV 240 IRGIRPL+ G+H LA+++ V++++ GIF DL++SIN AS LQ K ALK+RDEARSNW+ Sbjct: 181 IRGIRPLVSGVHNLAREELVQLDSKGIFGDLAQSINSASTKLQKKTDALKARDEARSNWI 240 Query: 241 AGISHDIRTPLSMILGYASNLEEQVNLTXXXXXXXXXXXXXXXXLRSLVSDLNLVSMLEY 300 AGISHDIRTPLS+ILGYAS +E+ +L+ LRSLVSDLNLVSMLEY Sbjct: 241 AGISHDIRTPLSIILGYASEMEDNFDLSEDQRRQAGIIRHQGEKLRSLVSDLNLVSMLEY 300 Query: 301 DMQPLQLKPVRLSTLARTVASDIINNGLDERYPIDLSITDESLQVMGDEKLLYRAVSNLV 360 +MQPL LK +RLS LAR VA+D +NNGLD+RY IDL + E+++V+GDEKLL RA+SNLV Sbjct: 301 EMQPLHLKQIRLSVLARQVATDFLNNGLDDRYEIDLKLNVEAVKVIGDEKLLLRAISNLV 360 Query: 361 QNSVQHNPDGCRIVLRSSRGPEDCCYSLSVSDTGAGIAPEHLPELVLLPYSAGRVHPVRQ 420 QNSV HN GC I L +S + Y V D G GI E L E+ LPYS+ R V++ Sbjct: 361 QNSVNHNTQGCVITLETSLSKDRSQYRFIVKDNGRGIPKEKLTEITELPYSSRRKRTVKE 420 Query: 421 GHGLGLPMVARIAEAHKGKLILES-GTAQGLHATLQFPA 458 GHGLG+PMVARI +AH G+L + S G GL ++ PA Sbjct: 421 GHGLGIPMVARIVQAHHGRLFISSNGDRGGLTTVIELPA 459 >C0ZE65.1 C0ZE65_BREBN Two-component sensor histidine kinase EC=2.7.3.- Length = 460 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 217/457 (47%), Positives = 274/457 (59%) Query: 1 MDSAVRILRKFVGXXXXXXXXXXXXXXXXXXXXIFKETHQETSPETVVREIAAGLKTAAG 60 MD A RILR++ G +FK ++ + P V + +A GL Sbjct: 1 MDGAARILRRYTGASILIAVFLLIVNYIILGTFVFKGMNEGSPPIHVTQAVAEGLHKNGS 60 Query: 61 KHALEPEXXXXXXXXXXXXXXXNQEGKVQWSEQLPAEIPRSYSILEVAKFSRYYLQGYPV 120 + LEP +GKV W +P E+PR+YS+ EVA+ SR YLQ YPV Sbjct: 61 HYTLEPNAQEWLQKSQAWAMLIGNDGKVIWDYAIPNELPRTYSLAEVAQLSRNYLQDYPV 120 Query: 121 YIWEHPEGLLVVGYPKHSYEKYQLEYLTDWXXXXXXXXXXXXXXXXXXXXXXXXFIGTRL 180 ++WEH GL+VVGYPK S KYQ + W FIG+RL Sbjct: 121 FVWEHELGLVVVGYPKDSLAKYQFHFPISWISDLPYRLLALLFGNILLAALLSLFIGSRL 180 Query: 181 IRGIRPLIDGIHALAKDKPVRVETGGIFSDLSESINLASATLQAKNTALKSRDEARSNWV 240 IR IRPLI IHAL++D+ VE G+FS ++ SIN AS+ LQ KN LK+RDEARSNW+ Sbjct: 181 IRAIRPLISEIHALSEDQHTHVEAKGMFSGIARSINHASSLLQKKNALLKARDEARSNWI 240 Query: 241 AGISHDIRTPLSMILGYASNLEEQVNLTXXXXXXXXXXXXXXXXLRSLVSDLNLVSMLEY 300 AGISHDIRTPLSM+LGYAS LEE + LRSLVSDLNLVSMLEY Sbjct: 241 AGISHDIRTPLSMVLGYASELEESDAVPYEQQQKASIIRKQGEKLRSLVSDLNLVSMLEY 300 Query: 301 DMQPLQLKPVRLSTLARTVASDIINNGLDERYPIDLSITDESLQVMGDEKLLYRAVSNLV 360 +MQP+ KP+RLSTLAR + +D +NN L E + I+L +T E VMGDEKLL RA++NL+ Sbjct: 301 EMQPIHTKPIRLSTLARQIVTDFLNNDLAETFTIELDVTTEQCFVMGDEKLLVRAITNLI 360 Query: 361 QNSVQHNPDGCRIVLRSSRGPEDCCYSLSVSDTGAGIAPEHLPELVLLPYSAGRVHPVRQ 420 QNS+ HNP GC I ++++ P L ++D G GI P LP+LV LPYS+ R P++ Sbjct: 361 QNSIVHNPSGCHIHVQTALSPNQRNALLIITDNGKGIEPSMLPDLVELPYSSKRKSPLQN 420 Query: 421 GHGLGLPMVARIAEAHKGKLILESGTAQGLHATLQFP 457 GHGLGLPMVARIA AH G L+L S T +G+ A L FP Sbjct: 421 GHGLGLPMVARIAAAHHGHLLLTSDTGKGMTAELCFP 457 >Q4MHS6.1 Q4MHS6_BACCE Sensor protein EC=2.7.13.3 Length = 470 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 214/459 (46%), Positives = 278/459 (60%), Gaps = 1/459 (0%) Query: 1 MDSAVRILRKFVGXXXXXXXXXXXXXXXXXXXXIFKETHQETSPETVVREIAAGLKTAAG 60 M+ RIL++FV +F ET+Q+ E ++++++ L Sbjct: 1 MEGITRILQRFVTTTILISLFVLIFNFVLLGTLVFTETNQKMPSEVLLKKLSQNLDRQDN 60 Query: 61 KHALEPEXXXXXXXXXXXXXXXNQEGKVQWSEQLPAEIPRSYSILEVAKFSRYYLQGYPV 120 + L +++G VQW LP ++PR Y++++VAKFSRYYL YPV Sbjct: 61 NYQLNESTIKILQHNLAWAMFIDEDGHVQWDYHLPKDVPRFYNLVDVAKFSRYYLLQYPV 120 Query: 121 YIWEHPEGLLVVGYPKHSYEKYQLEYLTDWXXXXXXXXXXXXXXXXXXXXXXXXFIGTRL 180 Y WEH GL+VVGYPK S+ KYQ +L+DW IGTR Sbjct: 121 YTWEHDNGLIVVGYPKESHWKYQFSFLSDWLREMPLRIGLLLLFNIGITLLISVVIGTRF 180 Query: 181 IRGIRPLIDGIHALAKDKPVRVETGGIFSDLSESINLASATLQAKNTALKSRDEARSNWV 240 I+GIRPL+ G+H LA+++ V++++ GI DL++SIN AS TL+ K ALK RDEARSNW+ Sbjct: 181 IKGIRPLVSGVHNLAREESVQLDSRGILGDLAQSINSASTTLKKKTDALKVRDEARSNWI 240 Query: 241 AGISHDIRTPLSMILGYASNLEEQVNLTXXXXXXXXXXXXXXXXLRSLVSDLNLVSMLEY 300 AGISHDIRTPLS+ILGYAS +E+ L LRSL+SDLNLVSMLEY Sbjct: 241 AGISHDIRTPLSIILGYASEMEDSFELPEEHRQQAGIIRQQGEKLRSLISDLNLVSMLEY 300 Query: 301 DMQPLQLKPVRLSTLARTVASDIINNGLDERYPIDLSITDESLQVMGDEKLLYRAVSNLV 360 +MQPL LK +RLS LAR VA+D +NNGLD+RY L + E++QVMGDEKLL RA++NLV Sbjct: 301 EMQPLHLKQIRLSVLARQVATDFLNNGLDDRYEFILKLNFEAVQVMGDEKLLLRAITNLV 360 Query: 361 QNSVQHNPDGCRIVLRSSRGPEDCCYSLSVSDTGAGIAPEHLPELVLLPYSAGRVHPVRQ 420 QNSV HN GC I L +S Y L V D G GI E L E+ LPYS+ R V++ Sbjct: 361 QNSVTHNNQGCIITLETSLSKNQSQYRLIVKDNGQGIPTEKLTEITELPYSSRRNRTVQE 420 Query: 421 GHGLGLPMVARIAEAHKGKLILESGTAQ-GLHATLQFPA 458 GHGLG+PMVARI +AH+G L L S Q GL AT++ P Sbjct: 421 GHGLGIPMVARIVQAHRGNLNLASSEDQSGLIATIELPV 459 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,406,894,259 Number of extensions: 88808779 Number of successful extensions: 295591 Number of sequences better than 1.0e-05: 13936 Number of HSP's gapped: 286935 Number of HSP's successfully gapped: 13963 Length of query: 482 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 342 Effective length of database: 1,741,754,103 Effective search space: 595679903226 Effective search space used: 595679903226 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)