BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0013.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1B7Q1.1 B1B7Q1_CLOBO ABC transporter ATP-binding protein 395 e-108 A0PYD9.1 A0PYD9_CLONN ABC transporter ATP-binding protein 391 e-107 C1UE38.1 C1UE38_9ACTN ABC-type multidrug transport system, ATPas... 367 e-100 Q187K0.1 Q187K0_CLOD6 ABC transporter, ATP-binding protein 365 4e-99 C0FQL0.1 C0FQL0_9FIRM Putative uncharacterized protein 352 2e-95 >B1B7Q1.1 B1B7Q1_CLOBO ABC transporter ATP-binding protein Length = 294 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 184/288 (63%), Positives = 229/288 (79%), Gaps = 1/288 (0%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 MEL NKLT++F K AV++++ + GVYGLLGANGAGKTTLMRM+CGV+NPT+GD+ L Sbjct: 1 MELTFNKLTRKFNDKIAVNEISTKVSTGVYGLLGANGAGKTTLMRMICGVINPTSGDILL 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 D DLGEEYR+LLGYLPQDFGYYPDFTA EFM Y+AALKGIS ++A++++KELL +V Sbjct: 61 DNNNICDLGEEYRNLLGYLPQDFGYYPDFTAKEFMYYIAALKGISTKRAKVKTKELLEMV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 L++V+ KKI TFSGGMKQRLGIAQAVLNDP+IL+LDEPTAGLDPKERV FRNL+ANF+K Sbjct: 121 ALSQVANKKIGTFSGGMKQRLGIAQAVLNDPKILILDEPTAGLDPKERVRFRNLVANFAK 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 DKIVILSTHIVSDIEYI+D + ++K+G I+ D + G VW CVV Sbjct: 181 DKIVILSTHIVSDIEYIADKIFIMKEGNFIMQGTVDELIALAKGYVWECVVDSREVEKYE 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQND 288 S +C+ NLHH + V LR++S E PM+ A++E PTLEDLYLY+FQ++ Sbjct: 241 SKYCIGNLHHL-NGKVKLRIISKEKPMEDAVSETPTLEDLYLYYFQDE 287 >A0PYD9.1 A0PYD9_CLONN ABC transporter ATP-binding protein Length = 293 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/288 (63%), Positives = 229/288 (79%), Gaps = 1/288 (0%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 MEL NKLT++F K AV++++ + GVYGLLGANGAGKTTLMRM+CGV+NPT+G++ L Sbjct: 1 MELTFNKLTRKFNDKIAVNEISTKISTGVYGLLGANGAGKTTLMRMICGVINPTSGEILL 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 D DLGEEYR+LLGYLPQDFGYYPDFTA EFM Y+AALKGI+ ++A++++KELL +V Sbjct: 61 DNNNIHDLGEEYRNLLGYLPQDFGYYPDFTAKEFMYYIAALKGINTKRAKVKTKELLEMV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 L++V+ KKI TFSGGMKQRLGIAQAVLNDP+IL+LDEPTAGLDPKERV FRNL+ANF+K Sbjct: 121 ALSKVANKKIGTFSGGMKQRLGIAQAVLNDPKILILDEPTAGLDPKERVRFRNLVANFAK 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 DKIVILSTHIVSDIEYI+D + ++K+G I+ D + G VW CVV Sbjct: 181 DKIVILSTHIVSDIEYIADKIFIMKEGNFIMQGTVDELIALAKGYVWECVVDSREVEKYQ 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQND 288 S +C+ NLHH + V LR++S E P++ A+ EIPTLEDLYLY+FQ++ Sbjct: 241 SKYCIGNLHHL-NGKVKLRIISKEKPIEDALPEIPTLEDLYLYYFQDE 287 >C1UE38.1 C1UE38_9ACTN ABC-type multidrug transport system, ATPase component Length = 293 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/289 (60%), Positives = 225/289 (77%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 M+L +++LTKQFG K AVD+++ + PGVYGLLGANGAGKTTLMRMVC VL PT+G++ Sbjct: 1 MDLTIDRLTKQFGSKIAVDRVSTRLTPGVYGLLGANGAGKTTLMRMVCDVLRPTSGEIRF 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 DG+ LG+EYR+ LGYLPQDFGYYPDF+A +FM Y+AALKG+ AR RS ELL V Sbjct: 61 DGRDVHLLGDEYRARLGYLPQDFGYYPDFSALDFMCYLAALKGLDRRAARRRSLELLETV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 GL +V+ +K+RTFSGGMKQRLGIAQAVLNDP +LVLDEPTAGLDPKERV FRNLIA+F++ Sbjct: 121 GLADVARQKVRTFSGGMKQRLGIAQAVLNDPAVLVLDEPTAGLDPKERVRFRNLIASFAQ 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 DKIVILSTHIVSD+EYI+D +L+++ G I+ +I + GKVW C V A ++ Sbjct: 181 DKIVILSTHIVSDVEYIADEILVMRAGSFIMQGAPTDIVATVTGKVWECHVDARRADELA 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQNDI 289 ++ CV+N+H+ D + RV++DE P+ GA PTLED+YLY F++++ Sbjct: 241 AASCVSNVHYAADGHAVARVVADEAPVAGARALDPTLEDVYLYVFRDEV 289 >Q187K0.1 Q187K0_CLOD6 ABC transporter, ATP-binding protein Length = 288 Score = 365 bits (936), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 167/286 (58%), Positives = 220/286 (76%), Gaps = 1/286 (0%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 MEL + +LTKQ+ K VD++ + G+YG LG NGAGKTTLMRM+CG+L+PT+G+V + Sbjct: 1 MELSVERLTKQYNNKIIVDKIDFKLNEGIYGFLGENGAGKTTLMRMICGILSPTSGEVKV 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 DGK D+GE++R ++GYLPQ+FGYYPDFTA EFMLY+A+LKG+ P A+ +++ELL +V Sbjct: 61 DGKNNLDMGEDFRDMIGYLPQNFGYYPDFTAKEFMLYIASLKGLMPSYAKRKTQELLEMV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 GL+EV KKIRTFSGGMKQRLG AQ +LNDP+IL+LDEPTAGLDPKERV FRNLI+ FSK Sbjct: 121 GLSEVINKKIRTFSGGMKQRLGFAQTLLNDPKILILDEPTAGLDPKERVRFRNLISEFSK 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 +KIVILSTHIVSD+EYI+D +L++K G+ ++ + + ++ KVW+CVV + +S Sbjct: 181 EKIVILSTHIVSDVEYIADKILIMKKGRFVLTGSVEEVTSKIKDKVWKCVVNENEIDYMS 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQ 286 +C+AN+HH LR++SD P D A N PTLEDLYLY F Sbjct: 241 DRYCLANIHHS-GGVANLRIVSDIKPHDNACNLKPTLEDLYLYCFN 285 >C0FQL0.1 C0FQL0_9FIRM Putative uncharacterized protein Length = 291 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/288 (58%), Positives = 222/288 (77%), Gaps = 1/288 (0%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 MEL L++LTKQ+GRK AVD ++ T+KPGVYGLLGANGAGKTTLMRM+C VL T+G+V L Sbjct: 1 MELSLDRLTKQYGRKIAVDCVSATLKPGVYGLLGANGAGKTTLMRMLCAVLESTSGEVLL 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 DGK +G +YR++LGYLPQDFGYYP++TA EF++Y+AALKGI A+ R ELL +V Sbjct: 61 DGKEITSMGADYRNVLGYLPQDFGYYPNYTAVEFLMYIAALKGIPKNVAKKRVTELLEVV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 L+ V+ KK++TFSGGMKQR+GIAQA+LN+P+IL+LDEPTAGLDPKERV FRNL++ ++ Sbjct: 121 DLSHVANKKVKTFSGGMKQRVGIAQALLNNPKILILDEPTAGLDPKERVRFRNLLSEYAG 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 DKIVILSTHIVSDIE I+D VL++K GK ++ + H+ +GKVW V+ + A Sbjct: 181 DKIVILSTHIVSDIEAIADEVLLMKKGKFVLQGTVPELIHKANGKVWELSVSPQEARQWQ 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQND 288 + VANL H + +ILR++SD +P + A+ TLEDLYL++F + Sbjct: 241 TKTTVANLRH-EGKEIILRIISDNMPSERAVPCEATLEDLYLFYFSTE 287 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,792,713,112 Number of extensions: 74879436 Number of successful extensions: 499792 Number of sequences better than 1.0e-05: 91490 Number of HSP's gapped: 395758 Number of HSP's successfully gapped: 97867 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)