BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0008.p (203 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HXR9.1 B1HXR9_LYSSC Putative uncharacterized protein 182 2e-44 A3IDJ3.1 A3IDJ3_9BACI Putative uncharacterized protein 181 2e-44 Q8ELC8.1 Q8ELC8_OCEIH Putative uncharacterized protein OB3301 166 1e-39 A4Y206.1 A4Y206_SHEPC Putative uncharacterized protein 120 5e-26 C2AY28.1 C2AY28_9ENTR Putative uncharacterized protein 120 6e-26 >B1HXR9.1 B1HXR9_LYSSC Putative uncharacterized protein Length = 186 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 82/162 (50%), Positives = 115/162 (70%), Gaps = 1/162 (0%) Query: 41 GQTDTQAVGGDVQTAAMDTPGLKQLVHDFSSRSKKAESASISSTQLIVKESDGKSAAYAL 100 G + ++ D ++ +K+LV+++S K ESASI+S QLIV + +G +AYAL Sbjct: 25 GACNGESTNDDNPRKEVEMQNIKELVNEYSGDKTKDESASITSNQLIVTDKEGIESAYAL 84 Query: 101 PADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEFNISVTDSDGTVIMDNKTVKSQPNG 160 P DEFFVS+APY+++THPC HSLTGCQGE+ ++ + + DS G V++D +T+K+ NG Sbjct: 85 PEDEFFVSVAPYINETHPCTNHSLTGCQGELANKDIAVYIEDSKGNVLVD-ETMKTLANG 143 Query: 161 FIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTCVTTMQL 202 FIDLWLPRD+TY + +EH GK ES ST+E D TC+TTMQL Sbjct: 144 FIDLWLPRDQTYNIKMEHKGKTVESIFSTYESDGTCITTMQL 185 >A3IDJ3.1 A3IDJ3_9BACI Putative uncharacterized protein Length = 186 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 81/162 (50%), Positives = 115/162 (70%), Gaps = 1/162 (0%) Query: 41 GQTDTQAVGGDVQTAAMDTPGLKQLVHDFSSRSKKAESASISSTQLIVKESDGKSAAYAL 100 G + ++ D ++ +K+LV+++S K ESASI+S QLIV + +G +AYAL Sbjct: 25 GACNGESANDDNPRKEVEMQNIKELVNEYSGNKTKDESASITSNQLIVTDKEGIESAYAL 84 Query: 101 PADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEFNISVTDSDGTVIMDNKTVKSQPNG 160 P DEFFVS+APY+++THPC HSLTGCQGE+ ++ + + DS G V++D +T+K+ NG Sbjct: 85 PEDEFFVSVAPYINETHPCTNHSLTGCQGELANKDIAVYIEDSKGNVLVD-ETMKTLANG 143 Query: 161 FIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTCVTTMQL 202 FIDLWLPRD+TY + +EH GK ES ST+E + TC+TTMQL Sbjct: 144 FIDLWLPRDQTYNIKMEHKGKTVESIFSTYESEGTCITTMQL 185 >Q8ELC8.1 Q8ELC8_OCEIH Putative uncharacterized protein OB3301 Length = 170 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 62 LKQLVHDFSSRSKKAESASISSTQLIVKESDGKSAAYALPADEFFVSIAPYVDQTHPCAT 121 +K ++ D+S+ A SAS+++TQL V++ D K Y +P DEFFVSIAPYV++THPC Sbjct: 31 IKSMIQDYSTDQLTASSASVNATQLTVEDED-KVDIYPMPEDEFFVSIAPYVNETHPCTF 89 Query: 122 HSLTGCQGEMTGEEFNISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGK 181 HSLTGCQGE+ + F+I + D DG V+ D+ TV+S NGF+DLWLPRD+ + TI +D K Sbjct: 90 HSLTGCQGELVKKPFDIYIEDMDGNVVFDD-TVESFDNGFVDLWLPRDQEFNATITYDNK 148 Query: 182 QAESELSTFEKDDTCVTTMQL 202 QA S +STFE D TC+TTM+L Sbjct: 149 QATSTISTFENDPTCITTMRL 169 >A4Y206.1 A4Y206_SHEPC Putative uncharacterized protein Length = 183 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 5/123 (4%) Query: 85 QLIVKESDGKSAAYALPADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEFNISVTDSD 144 +++ SDGKS++ A+P D+FF+SIAPY++ +HPC H LTGC GE+ + + + D+D Sbjct: 58 RIVATFSDGKSSSVAIPKDQFFLSIAPYINSSHPCTNHVLTGCTGEIKNQVMKVVMIDTD 117 Query: 145 GTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQ-----AESELSTFEKDDTCVTT 199 + +K V +Q +GFID W+P+D+ I H K A LSTF D TC+TT Sbjct: 118 TGETLIDKQVTTQRDGFIDFWVPKDKNLAFNIYHKAKDGSERVAREVLSTFNNDRTCITT 177 Query: 200 MQL 202 MQL Sbjct: 178 MQL 180 >C2AY28.1 C2AY28_9ENTR Putative uncharacterized protein Length = 179 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 5/126 (3%) Query: 78 SASISSTQLIVKESDGKSAAYALP-ADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEF 136 SAS++ST L + D Y LP D+F++S APY QTHPC HSL+GCQGEM + F Sbjct: 57 SASVTSTALKLSSGD---RVYTLPLGDKFYLSFAPYEWQTHPCFNHSLSGCQGEMPEKTF 113 Query: 137 NISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTC 196 N+ VTDS G V++ K +KS NGF+ +WLPR+ + + ++GK AE + T E TC Sbjct: 114 NVKVTDSKGDVVV-QKAMKSGRNGFVGVWLPRNMEGTIAVSYNGKSAEYPIKTMEDSQTC 172 Query: 197 VTTMQL 202 +T +QL Sbjct: 173 LTKLQL 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.126 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,042,283,174 Number of extensions: 37222289 Number of successful extensions: 68722 Number of sequences better than 1.0e-05: 90 Number of HSP's gapped: 68648 Number of HSP's successfully gapped: 90 Length of query: 203 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 74 Effective length of database: 1,845,385,268 Effective search space: 136558509832 Effective search space used: 136558509832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 128 (53.9 bits)