BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0007.p (406 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D967.1 B1D967_9BACL Putative uncharacterized protein 113 4e-23 Q67SR7.1 Q67SR7_SYMTH Putative uncharacterized protein 84 2e-14 Q67RC1.1 Q67RC1_SYMTH BNR domain protein 78 2e-12 A3HVD9.1 A3HVD9_9SPHI Glycosyl hydrolase, BNR protein 66 7e-09 A1ZU99.1 A1ZU99_9SPHI Glycosyl hydrolase, BNR repeat, putative 65 9e-09 >B1D967.1 B1D967_9BACL Putative uncharacterized protein Length = 428 Score = 113 bits (282), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 101/333 (30%), Positives = 145/333 (43%), Gaps = 17/333 (5%) Query: 83 FTTVDFLNADTGRAAGNGFVIGTSDGGCHFQEIYQGQWSFQQIDFPDNVHGWALASVKGG 142 T + ++ G AGNG + T DGG H++ Y G QI + WA Sbjct: 97 VTALRLADSKAGWVAGNGQIARTDDGGAHWRLQYSGSKPINQIFALSSNKVWATIGDSNA 156 Query: 143 QVKYLIRTTDGGSTWKRLSQSPVTFERIEFVDGTTGFGYNRASTYYTKDGGSTWTRIPTP 202 + LI++T+GG +W + P + F + T F N TKDGG TWT + TP Sbjct: 157 KSLILIQSTNGGKSWTKAGTVP-NHGFLHFTNDKTAFSGN----AMTKDGGKTWTELQTP 211 Query: 203 ANTRGAD-FTTRSSGWAVVVAQGSGYQIMRTTDGGASWKQL---KKVAYPNPQYAQVYVN 258 G F ++GWAV V G M T +GG +W + K A PN + Sbjct: 212 GKEIGEVYFHDVNNGWAVQVVNGR-LLFMHTGNGGKTWNTVMTRKTEAAPNDVIIRSTA- 269 Query: 259 ASQVYTVLYGGSGMSQTSYSLYGSSDAGGSWTQIIXXXXXXXXXXX--XXXXXKQEKGPA 316 A+ + L G SGMSQTSYSL+ ++D G +W I KG Sbjct: 270 ANDAWIELIGDSGMSQTSYSLFHTADGGKTWLPAIVKNGAGSGPAPGFTMDDASVPKGMT 329 Query: 317 SGSPGNMQVVGKTTAFLVGYQPAAQMVGTGM-TENNGRTWSNSKTVLGFEGV--ISFTDR 373 S +PG + VV TA + G A T M T + G+ W+ K+ G I +D Sbjct: 330 SSAPGTLYVVNPQTAIMGGQCSACDKPNTIMKTTDGGKHWTIGKSEFTGYGTQFIGASDA 389 Query: 374 NQGWLAVRN-MNSSTLYATKDGGASWKAKFSFE 405 + W + N++ L + DGG +W F+F+ Sbjct: 390 SHIWFITTDATNAAVLNTSSDGGKTWHKAFTFK 422 >Q67SR7.1 Q67SR7_SYMTH Putative uncharacterized protein Length = 345 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 132/346 (38%), Gaps = 34/346 (9%) Query: 70 QKNQTAKGADPLTFTTVDFLNADTGRAAGNGFVIGTSDGGCHFQEIYQGQWSFQQIDFPD 129 ++N+ + P T V FLN G + T DGG ++ + Q ++ F D Sbjct: 13 EQNEDRNASAPAVPTAVAFLNESHGWVGAADGIWHTQDGGQNWTLQFPSQEPVIRLGFLD 72 Query: 130 NVHGWALASVKGGQVKYLIRTTDGGSTWKRLSQSPVTFERIEFVDGTTGFGYNRASTYYT 189 +GWAL L+RT +GG W ++FV + + Sbjct: 73 PQNGWALTGSAA-----LLRTENGGEDWSAAETPGAALRAVDFVGPAHVVATDGNGLLVS 127 Query: 190 KDGGSTWTRIPTPANTRGADFTTRSSGWAVVVAQGSGYQIMRTTDGGASWKQLKKVAYPN 249 +DGG TW R +P DF + GWA G G QI T DGG +W + P+ Sbjct: 128 RDGGKTWDRTSSPLPFSDLDFVSAEEGWAA----GEG-QIWHTRDGGTTWSAQLTLPEPD 182 Query: 250 PQYAQVYV---NASQVYTVLYGGSGM-SQTSYSLYGSSDAGGSWTQIIXXXXXXXXXXXX 305 +V + S + + G G SQ +Y LY ++DAG +WT + Sbjct: 183 KWLGHTFVRFTSESSGWVLFCLGQGAGSQETYLLYSTTDAGRTWTPRLIGRWPWPFA--- 239 Query: 306 XXXXKQEKGP-ASGSPGNMQV---VGKTTAFLVGYQPAAQMVGTG-MTENNGRTWSNSKT 360 E P A PG V TA++ Y PA + +T + K Sbjct: 240 ------EPAPEAPHGPGGHPVALGAWAETAWVAVYSPAGGHLEVARVTMGGAPPVVSDKI 293 Query: 361 VLGFEGV----ISFTDRNQGWLAVRNMNSS--TLYATKDGGASWKA 400 +G +SF D GWL V + + + T DGG W A Sbjct: 294 PVGGPAKPTAGLSFVDPKTGWLVVSDSQRTQGAILRTADGGQFWTA 339 >Q67RC1.1 Q67RC1_SYMTH BNR domain protein Length = 344 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 129/337 (38%), Gaps = 40/337 (11%) Query: 80 PLTFTTVDFLNADTGRAAGNGFVIGTSDGGCHFQEIYQGQWSFQQIDFPDNVHGWALASV 139 P T FL+ G + T DGG + + Q + ++ F D +GWAL Sbjct: 22 PSVPTAAAFLDERHGWIGAADGIWYTDDGGRKWTHQFPSQEAVIRLGFVDPQNGWALT-- 79 Query: 140 KGGQVKYLIRTTDGGSTWKRLSQSPVTFERIEFVDGTTGFGYNRASTYYTKDGGSTWTRI 199 Q +RT +GG+ W L + ++ V + ++DGG TW R Sbjct: 80 ---QSSAALRTQNGGADWITLDVPGASLRAVDLVSPAHAVATDGNGLLVSRDGGKTWDRS 136 Query: 200 PTPANTRGADFTTRSSGWAVVVAQGSGYQIMRTTDGGASWKQLKKVAYPNPQYAQVYV-- 257 P DF + GWA G G Q+ T DGG +W + P+ +V Sbjct: 137 RPPLPLADLDFVSEEEGWAA----GEG-QVWHTRDGGETWSAQLTLPEPDRWLGDTFVRF 191 Query: 258 -NASQVYTVLYGGSGMS-QTSYSLYGSSDAGGSWTQIIXXXXXXXXXXXXXXXXKQEKGP 315 + + + + G G + Q +Y LYG++D G +WT + + E Sbjct: 192 PSETSGWVLFCLGQGAAYQETYLLYGTTDGGRTWTPRL--------VGGWPWPFEAEAPE 243 Query: 316 ASGSPGNMQV---VGKTTAFLVGYQPAAQMV---------GTGMTENNGRTWSNSKTVLG 363 A PG V TA++ Y PAA + ++ + K +G Sbjct: 244 APQGPGGYPVAFDARADTAWVAVYSPAAGHLEVVRVTLGGAPPVSSDKIPIEDPRKPTVG 303 Query: 364 FEGVISFTDRNQGWLAVRNMN--SSTLYATKDGGASW 398 ISF D GWL + + + + + + DGG SW Sbjct: 304 ----ISFVDTETGWLVMSDSHQKKTAILRSDDGGTSW 336 >A3HVD9.1 A3HVD9_9SPHI Glycosyl hydrolase, BNR protein Length = 939 Score = 65.9 bits (159), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 10/165 (6%) Query: 81 LTFTTVDFLNADTGRAAGNGFVIGTSDGGCHFQEIYQGQWS-FQQIDFPDNVHGWALASV 139 L + ++N++TG AAG +I T DGG ++EI ++ Q IDF D G AL Sbjct: 35 LDLHAIHWINSETGIAAGENLLIRTQDGGITWEEIQTPDFNRIQAIDFWDENQGIAL--- 91 Query: 140 KGGQVKYLIRTTDGGSTWKRL-SQSPVTFERIEFVDGTTGFGYNR-ASTYYTKDGGSTWT 197 G LI+T DGG +W+ L + P T+ ++F+ + ++KD G WT Sbjct: 92 --GNQGTLIKTNDGGKSWEALGNLVPSTYYDLKFISENSLLTVAEGGKILHSKDQGGNWT 149 Query: 198 RIPTPANTRGADFTTRSSGWAVVVAQGSGYQIMRTTDGGASWKQL 242 +I + + + ++ G I+++ D G SW++L Sbjct: 150 QISSGITNDLRSISVLNE--QLIYIAGDNGSILKSEDKGTSWEKL 192 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 15/139 (10%) Query: 156 TWKRLSQSPVTFERIEFVDGTTGFGYNRASTYYTKDGGSTWTRIPTPANTR--GADFTTR 213 +W+R+ + I +++ TG T+DGG TW I TP R DF Sbjct: 26 SWERMQSWGLDLHAIHWINSETGIAAGENLLIRTQDGGITWEEIQTPDFNRIQAIDFWDE 85 Query: 214 SSGWAVVVAQGSGYQIMRTTDGGASWKQLKKVAYPNPQYAQVYVNASQVYTVLYGGSGMS 273 + G +A G+ +++T DGG SW+ L + P+ Y +++ + + TV GG Sbjct: 86 NQG----IALGNQGTLIKTNDGGKSWEALGNLV-PSTYYDLKFISENSLLTVAEGG---- 136 Query: 274 QTSYSLYGSSDAGGSWTQI 292 + S D GG+WTQI Sbjct: 137 ----KILHSKDQGGNWTQI 151 >A1ZU99.1 A1ZU99_9SPHI Glycosyl hydrolase, BNR repeat, putative Length = 345 Score = 65.5 bits (158), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 75/154 (48%), Gaps = 18/154 (11%) Query: 122 FQQIDFPDNVHGWALASVKGGQVKYLIRTTDGGSTWKRLSQSPVT-FERIEFVDGTTGF- 179 + I FPD HG+ G + +TTDGG TW+ +S+S VT +I F GF Sbjct: 52 LRSISFPDERHGYI-----AGDGGVIFKTTDGGITWQDISRSDVTPINKIIFTSAQVGFI 106 Query: 180 GYNRASTYYTKDGGSTWTRI-PTPANTRGADFTTRSSGWAVVVA-------QGSGYQIMR 231 + + T DGG++W + P N R F ++G+A++ + G +++ Sbjct: 107 ALKQKALLKTTDGGNSWIEVEPFSGNLRDIRFVG-NTGYAIINGVDRNTNQEDEGCALLK 165 Query: 232 TTDGGASWKQLKKVAYPNPQYAQVYVNASQVYTV 265 +TDGG SW + V+ P + V+A +VY V Sbjct: 166 STDGGDSWSHMLGVS--KPCWGMSVVDADKVYFV 197 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,546,403,036 Number of extensions: 109857882 Number of successful extensions: 229510 Number of sequences better than 1.0e-05: 44 Number of HSP's gapped: 229675 Number of HSP's successfully gapped: 59 Length of query: 406 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 268 Effective length of database: 1,760,596,133 Effective search space: 471839763644 Effective search space used: 471839763644 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)