BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0010.p
         (78 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O07615.1 YHFP_BACSU Putative quinone oxidoreductase yhfP EC=1.6.5.-   108   1e-22
C5DA71.1 C5DA71_9BACI Quinone oxidoreductase, YhdH/YhfP family        105   1e-21
A7Z1Z2.1 A7Z1Z2_BACA2 YhfP                                             94   3e-18
A3I591.1 A3I591_9BACI Putative uncharacterized protein                 93   6e-18
B1HSH4.1 B1HSH4_LYSSC Protein yhdH                                     93   1e-17

>O07615.1 YHFP_BACSU Putative quinone oxidoreductase yhfP EC=1.6.5.-
          Length = 330

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           VPATV PFILRGVSLLGID+V CP++ R  +WERM+SDLKP++L  +VDREV+L E P A
Sbjct: 254 VPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGA 313

Query: 61  LEDILTSNTRGRVLVRL 77
           L+DIL +  +GRV+V+L
Sbjct: 314 LKDILQNRIQGRVIVKL 330


>C5DA71.1 C5DA71_9BACI Quinone oxidoreductase, YhdH/YhfP family
          Length = 330

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 61/78 (78%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           VP TV PFILRGVSLLGID+V CP+E R QIWERMASDLKP++L   + +EVTL +LP A
Sbjct: 253 VPTTVFPFILRGVSLLGIDSVYCPMELRKQIWERMASDLKPDKLLESIAQEVTLEQLPEA 312

Query: 61  LEDILTSNTRGRVLVRLS 78
           L +IL    RGR +V+LS
Sbjct: 313 LSNILKGKLRGRTVVKLS 330


>A7Z1Z2.1 A7Z1Z2_BACA2 YhfP
          Length = 333

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           +PATV PFILRGVSLLGID+V CP+E R + W+R+A D KP  L+A + +E+TL ELP  
Sbjct: 254 LPATVFPFILRGVSLLGIDSVFCPMETRKKTWQRLADDFKPADLEAFIQKEITLEELPDT 313

Query: 61  LEDILTSNTRGRVLVRLS 78
           L  +L    RGR +V ++
Sbjct: 314 LPALLKGEARGRTIVTIN 331


>A3I591.1 A3I591_9BACI Putative uncharacterized protein
          Length = 330

 Score = 93.2 bits (230), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 57/77 (74%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           +P +V PFILRGV+LLGID+V CP++ R++IW R+A+D KP  L++ + +EVTL +LP  
Sbjct: 254 LPTSVFPFILRGVNLLGIDSVYCPMDVRLKIWNRLATDFKPTNLESFIHQEVTLQQLPDV 313

Query: 61  LEDILTSNTRGRVLVRL 77
           L  +L    RGR LV+L
Sbjct: 314 LPMLLKGQARGRFLVKL 330


>B1HSH4.1 B1HSH4_LYSSC Protein yhdH
          Length = 333

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 56/77 (72%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           +P +V PFILRGV+LLGID+V CP++ R+ IW+R+A+D KP  L+  + +EVTL +LP  
Sbjct: 257 LPTSVFPFILRGVNLLGIDSVYCPMDVRLNIWDRLATDFKPANLEGFIYQEVTLQQLPNV 316

Query: 61  LEDILTSNTRGRVLVRL 77
           L  +L    RGR LV+L
Sbjct: 317 LPILLKGQARGRFLVKL 333


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 416,442,601
Number of extensions: 13414388
Number of successful extensions: 63282
Number of sequences better than 1.0e-05: 596
Number of HSP's gapped: 62960
Number of HSP's successfully gapped: 596
Length of query: 78
Length of database: 3,060,696,203
Length adjustment: 49
Effective length of query: 29
Effective length of database: 2,599,066,468
Effective search space: 75372927572
Effective search space used: 75372927572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)