BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0009.p (223 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I591.1 A3I591_9BACI Putative uncharacterized protein 215 2e-54 C5DA71.1 C5DA71_9BACI Quinone oxidoreductase, YhdH/YhfP family 211 3e-53 A6CKB9.1 A6CKB9_9BACI Putative uncharacterized protein 206 8e-52 B1HSH4.1 B1HSH4_LYSSC Protein yhdH 206 1e-51 A6TNV8.1 A6TNV8_ALKMQ Quinone oxidoreductase putative, YhdH/YhfP 205 2e-51 >A3I591.1 A3I591_9BACI Putative uncharacterized protein Length = 330 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 100/147 (68%), Positives = 122/147 (82%) Query: 3 ETFKALVVDKGETFSVAVQPLSLEKLPAGEVLIRVAYSSVNYKDGLASIPNGNIVRNYPF 62 E FKALVV++ E FSV V L++ LP GEVLI+V+YS +NYKD LA+IP+G IV +YPF Sbjct: 4 ENFKALVVNQDENFSVKVNNLTVNDLPNGEVLIKVSYSGINYKDSLATIPDGKIVTSYPF 63 Query: 63 IPGIDLSGTVVSSADPRFHEGQAVIATGYGIGVSHYGGFSEYARIPAGWVMPLPAGLSLR 122 +PGIDL+G VVSS DPRFHEG VIAT Y IGV+H+GGFSEYARIP+ W++PLP+GLSL+ Sbjct: 64 VPGIDLAGIVVSSEDPRFHEGDEVIATSYEIGVAHFGGFSEYARIPSKWIVPLPSGLSLK 123 Query: 123 EAMIYGTAGFTAAMSIQALEAHGAAPD 149 EAMI GTAGFTAA+SIQ LE +G P+ Sbjct: 124 EAMIIGTAGFTAALSIQRLEENGINPE 150 >C5DA71.1 C5DA71_9BACI Quinone oxidoreductase, YhdH/YhfP family Length = 330 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 101/146 (69%), Positives = 121/146 (82%), Gaps = 1/146 (0%) Query: 5 FKALVVDKGET-FSVAVQPLSLEKLPAGEVLIRVAYSSVNYKDGLASIPNGNIVRNYPFI 63 FKALVV+K ET F+V VQ + ++ LP G+VLI+V YSSVNYKDGLASIP+G IV+ YPFI Sbjct: 4 FKALVVNKTETDFTVNVQAVMMDDLPEGDVLIKVQYSSVNYKDGLASIPDGKIVKTYPFI 63 Query: 64 PGIDLSGTVVSSADPRFHEGQAVIATGYGIGVSHYGGFSEYARIPAGWVMPLPAGLSLRE 123 PGIDL+G VVSS DPRF EG VIATGY IGV+HYGG+SEYARIP W++PLP GL+L+E Sbjct: 64 PGIDLAGIVVSSDDPRFKEGDEVIATGYEIGVTHYGGYSEYARIPGDWLVPLPKGLTLKE 123 Query: 124 AMIYGTAGFTAAMSIQALEAHGAAPD 149 AM GTAGFTAA+SI LE +G +P+ Sbjct: 124 AMALGTAGFTAALSIHRLEENGLSPE 149 >A6CKB9.1 A6CKB9_9BACI Putative uncharacterized protein Length = 346 Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 97/150 (64%), Positives = 119/150 (79%), Gaps = 1/150 (0%) Query: 1 MTETFKALVVDKGE-TFSVAVQPLSLEKLPAGEVLIRVAYSSVNYKDGLASIPNGNIVRN 59 M+ TFKALVV+K E FSV ++PL+ E LP G+V IRV YSSVNYKDGLASIPNG +V++ Sbjct: 16 MSNTFKALVVNKTEEDFSVNIEPLTFEDLPQGDVTIRVHYSSVNYKDGLASIPNGKVVQS 75 Query: 60 YPFIPGIDLSGTVVSSADPRFHEGQAVIATGYGIGVSHYGGFSEYARIPAGWVMPLPAGL 119 YPF+PGIDL+G V SS D R+ EG VI T Y +GVSHYGG+SEYAR+P WV+PLP L Sbjct: 76 YPFVPGIDLAGVVTSSDDDRYKEGDKVIVTSYELGVSHYGGYSEYARVPGDWVVPLPDNL 135 Query: 120 SLREAMIYGTAGFTAAMSIQALEAHGAAPD 149 +L+EAM++GTAGFTAA+SI LE G P+ Sbjct: 136 TLKEAMVFGTAGFTAALSIHQLENSGLRPE 165 >B1HSH4.1 B1HSH4_LYSSC Protein yhdH Length = 333 Score = 206 bits (525), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 96/148 (64%), Positives = 119/148 (80%) Query: 2 TETFKALVVDKGETFSVAVQPLSLEKLPAGEVLIRVAYSSVNYKDGLASIPNGNIVRNYP 61 E FKALVV++ E F+V V L+L LP GEVLI+V+YS +NYKD LA+I +G IV +YP Sbjct: 6 VENFKALVVNQDENFTVKVNDLTLNDLPNGEVLIKVSYSGINYKDSLAAIQDGKIVTSYP 65 Query: 62 FIPGIDLSGTVVSSADPRFHEGQAVIATGYGIGVSHYGGFSEYARIPAGWVMPLPAGLSL 121 F+PGIDL+G VVSS D RF EG VIAT Y IGVSH+GGFSEYARIP+ W++P P+GLSL Sbjct: 66 FVPGIDLAGIVVSSEDSRFQEGDKVIATSYEIGVSHFGGFSEYARIPSKWIVPCPSGLSL 125 Query: 122 REAMIYGTAGFTAAMSIQALEAHGAAPD 149 +EAMI GTAGFTAA+SIQ L+ +G +P+ Sbjct: 126 KEAMIIGTAGFTAALSIQRLQENGISPE 153 >A6TNV8.1 A6TNV8_ALKMQ Quinone oxidoreductase putative, YhdH/YhfP Length = 330 Score = 205 bits (522), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 97/150 (64%), Positives = 121/150 (80%), Gaps = 1/150 (0%) Query: 1 MTETFKALVVDK-GETFSVAVQPLSLEKLPAGEVLIRVAYSSVNYKDGLASIPNGNIVRN 59 M+E F+ALVV+K E F+V++ L +E LP GEV IRVAYSSVNYKDGLASIP G IV++ Sbjct: 1 MSEKFRALVVNKINEDFTVSINDLIMEDLPEGEVTIRVAYSSVNYKDGLASIPEGQIVKS 60 Query: 60 YPFIPGIDLSGTVVSSADPRFHEGQAVIATGYGIGVSHYGGFSEYARIPAGWVMPLPAGL 119 YPFIPGIDL GTVV+S + ++ +G VI T YG+GVSHYGG+SEYAR+PA WV+PLP GL Sbjct: 61 YPFIPGIDLVGTVVTSTNSQYQKGDEVIVTSYGLGVSHYGGYSEYARVPAHWVVPLPKGL 120 Query: 120 SLREAMIYGTAGFTAAMSIQALEAHGAAPD 149 +++EAM +GTAGFTAA+S+ LE G PD Sbjct: 121 TMKEAMAFGTAGFTAALSVYKLEEAGLTPD 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,099,690,096 Number of extensions: 43936053 Number of successful extensions: 102532 Number of sequences better than 1.0e-05: 694 Number of HSP's gapped: 103173 Number of HSP's successfully gapped: 694 Length of query: 223 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 92 Effective length of database: 1,826,543,238 Effective search space: 168041977896 Effective search space used: 168041977896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)