BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0003.p (265 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8S3S7.1 A8S3S7_9CLOT Putative uncharacterized protein 129 3e-28 B1DGC3.1 B1DGC3_9BACL Membrane protein, putative 122 2e-26 C1TFC5.1 C1TFC5_9FIRM ABC-type uncharacterized transport system,... 120 1e-25 A9KKD5.1 A9KKD5_CLOPH Membrane protein, putative 114 1e-23 Q73QF7.1 Q73QF7_TREDE Membrane protein, putative 107 9e-22 >A8S3S7.1 A8S3S7_9CLOT Putative uncharacterized protein Length = 267 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 5/242 (2%) Query: 8 KACISLFRIRMAEGLQYRASAISGVFVSVFWGLLECVLFTVFYTYSDNGAWNNNGLALPQ 67 K S F+IR +GLQYR +A +G+ WG +E +LF+ FY S+ A+ + Q Sbjct: 2 KKYASFFKIRFIQGLQYRTAAYAGILTQFMWGAMEILLFSAFYR-SEPEAFP---MGFSQ 57 Query: 68 TISYVWLAQGLFVL-QTMSIDSEIMGKINNGDVGVELCRPLNLYTHWFVKSSAGKLGTSW 126 SY WL Q L T ++ EI I+NG V ELCRP+++Y+ WFVKS A + + Sbjct: 58 LASYYWLQQAFLALFMTWLMEEEIFQAISNGTVAYELCRPVDIYSMWFVKSLANRASKAV 117 Query: 127 LRSLATILTGLLMPAGYALGAPASALGFACFLLSVVMAFVLCSSFAMFVTAIRLNITWGD 186 LR + +LT LL+P Y L P FLLS+++ F++ +F+M + Sbjct: 118 LRCMPILLTALLLPKPYGLALPPDVKTAVLFLLSMILGFLVVVAFSMLIYIATFFTLSPL 177 Query: 187 GPTYMLLLFSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPVQLYVGSLMPSAXXXXL 246 G + L +SG +PL P ++ + L PF + P ++Y ++ +A L Sbjct: 178 GIRVISLSLVEFMSGGIIPLPFLPGRIRGIMELLPFASMQNAPYRIYSANIAGAAAVSTL 237 Query: 247 QL 248 L Sbjct: 238 SL 239 >B1DGC3.1 B1DGC3_9BACL Membrane protein, putative Length = 267 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 128/244 (52%), Gaps = 11/244 (4%) Query: 11 ISLFRIRMAEGLQYRASAISGVFVSVFWGLLECVLFTVFYTYSDNGAWNNNGLALPQTIS 70 +S++++R GLQYR +AI+G+ +F+G + +++ FY +S ++L Q S Sbjct: 5 LSVWKLRFVSGLQYRTAAIAGMATQLFFGFIFIMVYVAFYEHSSA----QPSMSLEQLAS 60 Query: 71 YVWLAQGLFVLQTMSI-DSEIMGKINNGDVGVELCRPLNLYTHWFVKSSAGKLGTSWLRS 129 Y+WL Q + D+EI I +G++ ELCRP +Y+ W+ K A +L ++ LR Sbjct: 61 YIWLQQIFLAFVMLWFRDNEIFNLITSGNIAYELCRPCGIYSFWYAKLLAQRLSSAILRC 120 Query: 130 LATILTGLLMPAGYALGAPASALGFACFLLSVVMAFVLCSSFAMFVTAIRLNITWGDGP- 188 + +L L+P Y L P + A F++++++ + + +MF I +++ W P Sbjct: 121 VPILLVAFLLPKPYNLTMPPTGTTLALFVVTLLLGLAVNIAISMF---IYISVFWTLSPV 177 Query: 189 --TYMLLLFSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPVQLYVGSLMPSAXXXXL 246 T ++ + L+G +P+ L PD+MQ Y PF AD P ++Y G + S + Sbjct: 178 GSTLVIAVIGEFLAGMIIPVPLMPDWMQALTYALPFRWTADFPFRVYSGQIPQSEAVWGI 237 Query: 247 QLAC 250 + C Sbjct: 238 LIQC 241 >C1TFC5.1 C1TFC5_9FIRM ABC-type uncharacterized transport system, permease component Length = 267 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 117/235 (49%), Gaps = 13/235 (5%) Query: 8 KACISLFRIRMAEGLQYRASAISGVFVSVFWGLLECVLFTVFYTYSDNGAWNNNGLALP- 66 K I++ RIR LQYRA+AI+G+ WGL+E + F+ FY N A P Sbjct: 2 KKYIAIIRIRFINSLQYRAAAIAGMATQFAWGLMEILAFSAFY--------RANPAAFPM 53 Query: 67 ---QTISYVWLAQGLFVL-QTMSIDSEIMGKINNGDVGVELCRPLNLYTHWFVKSSAGKL 122 QT+SY+W+ Q L L + EI I +G + EL RP++LY+ WF +S A +L Sbjct: 54 EFSQTVSYIWMQQALLALFMVWFFEGEIFASITSGGIAYELARPVDLYSRWFCQSMANRL 113 Query: 123 GTSWLRSLATILTGLLMPAGYALGAPASALGFACFLLSVVMAFVLCSSFAMFVTAIRLNI 182 + LR ++ ++P + + P +A F FL+S ++ + SF+M + Sbjct: 114 AKAVLRCFPILIVAFIVPEPFRMSLPVNAGQFILFLVSASLSLFVVVSFSMLIYISTFYT 173 Query: 183 TWGDGPTYMLLLFSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPVQLYVGSL 237 G + + + ++G +PL +P T L PF ++P+++Y G++ Sbjct: 174 LSPMGVRLISAVLADFMAGATIPLPFFPPAFLTVAELMPFAAMQNMPLRIYSGNI 228 >A9KKD5.1 A9KKD5_CLOPH Membrane protein, putative Length = 258 Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 5/223 (2%) Query: 16 IRMAEGLQYRASAISGVFVSVFWGLLECVLFTVFYTYSDNGAWNNNGLALPQTISYVWLA 75 +R + GLQYR +A++G+ WG +E +LF FY +D A+ AL SY+WL Sbjct: 1 MRFSTGLQYRQAALAGMATQFVWGAMEILLFKAFYE-ADPSAFPMEFSAL---TSYIWLQ 56 Query: 76 QGLFVLQTM-SIDSEIMGKINNGDVGVELCRPLNLYTHWFVKSSAGKLGTSWLRSLATIL 134 Q L M ++ EI I +G + ELCRPL+LY+ WF ++ A +L + LR + ++ Sbjct: 57 QAFLALYMMWFLEREIFDSITSGGIAYELCRPLDLYSMWFARNIANRLSKAVLRCIPILI 116 Query: 135 TGLLMPAGYALGAPASALGFACFLLSVVMAFVLCSSFAMFVTAIRLNITWGDGPTYMLLL 194 +P Y + P S + F FL+S+ +A + +F+M + + G + Sbjct: 117 LAACLPKPYGMLPPRSFITFILFLISMGLALFVTVAFSMILYILCFYTISPLGIRMVAFS 176 Query: 195 FSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPVQLYVGSL 237 SG+ +PL PD ++ + PF ++P ++Y G L Sbjct: 177 LVEFFSGSVIPLPFLPDGIRQVCEMLPFASMQNVPFRIYSGDL 219 >Q73QF7.1 Q73QF7_TREDE Membrane protein, putative Length = 266 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 6/227 (2%) Query: 8 KACISLFRIRMAEGLQYRASAISGVFVSVFWGLLECVLFTVFYTYSDNGAWNNNGLALPQ 67 K +S F+IR LQYRA+A++G+ WG L +LF FY S N + Sbjct: 2 KKYLSFFKIRFIANLQYRAAALAGISTQFAWGTLNIILFKAFYESSP----ENFPMGFSA 57 Query: 68 TISYVWLAQGLFVLQTM-SIDSEIMGKINNGDVGVELCRPLNLYTHWFVKSSAGKLGTSW 126 +SY+W+ Q M + +S+I I +G + ++ +P+N+Y WF +S A +L Sbjct: 58 FVSYIWMQQAFLAFFAMWTFESDITDSIVSGSIAYQMSKPINIYNLWFTRSVALRLARGL 117 Query: 127 LRSLATILTGLLMPAGYALGAPASALGFACFLLSVVMAFVLCSSFAMFVTAIRLNITWGD 186 LR ++ ++P Y L P L F F+ S+++ ++F + + Sbjct: 118 LRCFPVLIIASILPQPYRLIMP-DLLTFFIFITSMILGLCTAAAFTCLIYVLCFFTVSPK 176 Query: 187 GPTYMLLLFSGILSGTYLPLRLWPDFMQTFLYLQPFGGFADIPVQLY 233 G + S +L G +P+ +P+ ++ L PF G +IP++++ Sbjct: 177 GLQIVFFSASEMLMGQIIPIPFFPETIKKILEFSPFTGIQNIPLRIF 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,567,103,096 Number of extensions: 64832836 Number of successful extensions: 198163 Number of sequences better than 1.0e-05: 152 Number of HSP's gapped: 198066 Number of HSP's successfully gapped: 152 Length of query: 265 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 132 Effective length of database: 1,807,701,208 Effective search space: 238616559456 Effective search space used: 238616559456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)