BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0002.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9KKD6.1 A9KKD6_CLOPH ABC transporter related 291 3e-77 B1DGC4.1 B1DGC4_9BACL ABC transporter related 290 8e-77 A9KNB7.1 A9KNB7_CLOPH ABC transporter related 283 8e-75 A8S3S6.1 A8S3S6_9CLOT Putative uncharacterized protein 283 1e-74 A9GT98.1 A9GT98_SORC5 ABC transporter, ATP-binding protein 280 1e-73 >A9KKD6.1 A9KKD6_CLOPH ABC transporter related Length = 265 Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 136/220 (61%), Positives = 170/220 (77%), Gaps = 5/220 (2%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 IA+GE+VGYIGPNGAGKS+T+K++SGIL PDSG C + G++PWK R HV IGVVFGQR Sbjct: 45 IADGEMVGYIGPNGAGKSSTIKILSGILYPDSGTCLVNGRIPWKERKAHVKDIGVVFGQR 104 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 SQLWWDVPV DSF++LKDIY IP Y+ L EL L + ++KTP RQLSLGQRMRCE Sbjct: 105 SQLWWDVPVIDSFELLKDIYDIPLTTYRDNLEELITLLNLSQIIKTPTRQLSLGQRMRCE 164 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 + A+LLH PKILFLDEPTIGLDA+SKLA+R F+++ N + T++LTTHDM DIEAL +R Sbjct: 165 IAASLLHEPKILFLDEPTIGLDAISKLAVRDFIRKRNETHKTTVILTTHDMQDIEALSKR 224 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPEVITKVNTDAMIAAMY 234 +++IG G+LL DG L L+ A + I D +IA+MY Sbjct: 225 IILIGKGRLLMDGTLDELKAVKAEDSI-----DEVIASMY 259 >B1DGC4.1 B1DGC4_9BACL ABC transporter related Length = 325 Score = 290 bits (741), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 134/211 (63%), Positives = 168/211 (79%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 I+ GE+VGYIGPNGAGKSTT+KVMSGIL PD+G C I+G PW++R +V IGVVFGQR Sbjct: 45 ISPGEIVGYIGPNGAGKSTTIKVMSGILVPDNGTCKILGYTPWQDRAAYVRHIGVVFGQR 104 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 +QLWWDVPV DSF +L+DIY IP Y+T L LT +L + +L+TPVRQLSLGQRMRCE Sbjct: 105 TQLWWDVPVIDSFGLLRDIYKIPGEVYRTNLAMLTESLALTDILQTPVRQLSLGQRMRCE 164 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 + A+LLH PKILFLDEPTIGLDA SK+A+R F+K N+ GVT++LTTHDM+DIEAL +R Sbjct: 165 IAASLLHDPKILFLDEPTIGLDAASKIAVRQFIKRINKERGVTVILTTHDMNDIEALADR 224 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPEVITKVN 225 +++IG G LLYDG L L+ ++ + I V+ Sbjct: 225 ILMIGKGTLLYDGSLNDLRGRFGSKRIVTVD 255 >A9KNB7.1 A9KNB7_CLOPH ABC transporter related Length = 324 Score = 283 bits (725), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 131/226 (57%), Positives = 170/226 (75%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 + +GE+VGYIGPNGAGKSTT+K+M GILTPDSGEC I G++PWK+R+ +V +IGVVFGQR Sbjct: 45 VGDGEIVGYIGPNGAGKSTTIKIMCGILTPDSGECVINGRIPWKDRISYVREIGVVFGQR 104 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 SQLWWDVP+ DSF++LK++Y I Y + L ELT L + +LKTP R LSLGQRMRCE Sbjct: 105 SQLWWDVPIIDSFELLKNMYKIDQKIYMSNLDELTQLLDLGEILKTPTRNLSLGQRMRCE 164 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 + A+LLH PK LFLDEPTIGLDAVSK+A+R F+K+ N G T++LTTHDM DIEAL ER Sbjct: 165 IAASLLHNPKTLFLDEPTIGLDAVSKIAVRQFIKKLNTERGTTIILTTHDMQDIEALTER 224 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPEVITKVNTDAMIAAMYNDLSLV 240 +++IG G++L DG L L++ + + V +Y + L+ Sbjct: 225 ILLIGKGKILLDGSLEELKKHTSQKKTLVVKYKQNKPELYTGMELI 270 >A8S3S6.1 A8S3S6_9CLOT Putative uncharacterized protein Length = 344 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 131/203 (64%), Positives = 161/203 (79%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 I EGE+VGYIGPNGAGKS+T+K+MSGIL PDSG+C I G PWK R E+V IGVVFGQR Sbjct: 56 IREGEIVGYIGPNGAGKSSTIKIMSGILVPDSGQCHINGMNPWKQRKEYVKDIGVVFGQR 115 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 SQLWWDVPVADSF++LKDIY + Y L+ L L + +++TPVRQLSLGQRMRCE Sbjct: 116 SQLWWDVPVADSFELLKDIYRLSDQSYHRNLSYLIQLLDIGTIIRTPVRQLSLGQRMRCE 175 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 L A+LLH P+ILFLDEPTIGLDAVSK+A+R ++E NR+ G T++LTTHD DIEAL R Sbjct: 176 LAASLLHSPRILFLDEPTIGLDAVSKVAVRNIIREINRDQGTTIILTTHDTQDIEALTNR 235 Query: 195 VMVIGHGQLLYDGRLGGLQEKYA 217 +++IG G+LL DG L L++ Y+ Sbjct: 236 ILLIGKGRLLLDGDLQMLKKHYS 258 >A9GT98.1 A9GT98_SORC5 ABC transporter, ATP-binding protein Length = 332 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 131/203 (64%), Positives = 160/203 (78%) Query: 17 EGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQRSQ 76 GELVGYIGPNGAGKSTTVK+++GIL PDSG C + G+VPW+ RV HV ++GVVFGQR+Q Sbjct: 49 RGELVGYIGPNGAGKSTTVKILAGILVPDSGRCEVAGRVPWRERVAHVGRLGVVFGQRTQ 108 Query: 77 LWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCELV 136 L WD+PV DSF++L+DIY + A D+ EL A L + LL TPVRQLSLGQRMRC+L Sbjct: 109 LLWDLPVIDSFELLRDIYRVGAADHARARDELVAMLDLGPLLDTPVRQLSLGQRMRCDLA 168 Query: 137 AALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCERVM 196 AALLH P +LFLDEPTIGLDAVSKLA+R F++ NR GVT++LTTHDMDDIEALC RV+ Sbjct: 169 AALLHAPDLLFLDEPTIGLDAVSKLAVRRFVQRLNRERGVTVILTTHDMDDIEALCSRVI 228 Query: 197 VIGHGQLLYDGRLGGLQEKYAPE 219 +I G++L DG L L+ + E Sbjct: 229 LIAGGRVLSDGSLEALRAQVTAE 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,393,529,311 Number of extensions: 55051381 Number of successful extensions: 423598 Number of sequences better than 1.0e-05: 73160 Number of HSP's gapped: 354639 Number of HSP's successfully gapped: 77452 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)