BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0029.p (141 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P96670.1 YDEM_BACSU Uncharacterized protein ydeM 190 5e-47 A7Z1P5.1 A7Z1P5_BACA2 YdeM 181 3e-44 Q8ERN5.1 Q8ERN5_OCEIH Hypothetical conserved protein 160 2e-38 Q7A8C7.1 Q7A8C7_STAAN Putative uncharacterized protein SA0037 154 2e-36 Q7A210.1 Q7A210_STAAW Putative uncharacterized protein MW0030 154 2e-36 >P96670.1 YDEM_BACSU Uncharacterized protein ydeM Length = 141 Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 91/141 (64%), Positives = 107/141 (75%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK EF GQVF FA EFDPQYMH+DEEKA +GRFNGIIASGIQT+A Sbjct: 1 MKLDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKASKGRFNGIIASGIQTLA 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLW+E G YGDDIIAGT MNH+ FIKPVYP+DEL T+VEV + K+N G +TV L Sbjct: 61 ISFKLWIEEGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVEVLDKQPKRNELGILTVLL 120 Query: 121 STFNQKDEKVFEGELTVLVKQ 141 ST+NQK+ KVFEGEL+VL+K+ Sbjct: 121 STYNQKEVKVFEGELSVLIKR 141 >A7Z1P5.1 A7Z1P5_BACA2 YdeM Length = 141 Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 85/141 (60%), Positives = 106/141 (75%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK EF GQVF FA +DPQYMHL+EEKAK GRFNGIIASGIQT++ Sbjct: 1 MKLDEFTIGQVFQTKSFELTKENIMNFAEVYDPQYMHLNEEKAKMGRFNGIIASGIQTLS 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 ++FKLW+E G + DDIIAGT MN++KF+ PVYP D+LHT+V+V K K+ TG +TV L Sbjct: 61 ITFKLWIEEGRHEDDIIAGTGMNNIKFLAPVYPNDKLHTIVKVIDKKPNKSQTGILTVLL 120 Query: 121 STFNQKDEKVFEGELTVLVKQ 141 ST+NQK+EKVFEGEL+VL+K+ Sbjct: 121 STYNQKEEKVFEGELSVLIKR 141 >Q8ERN5.1 Q8ERN5_OCEIH Hypothetical conserved protein Length = 141 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 99/140 (70%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MKF E GQVF FA+EFDPQYMHLDE+KA++G FNGIIASG+ T+A Sbjct: 1 MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLA 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE YG+D+IAGT MN++KFIKPV+P+D L +V+V +K+ K G +TV L Sbjct: 61 LSFKLWVEEEIYGEDVIAGTQMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLL 120 Query: 121 STFNQKDEKVFEGELTVLVK 140 TFN +DEKV EL+ ++K Sbjct: 121 ETFNDRDEKVLNVELSAIMK 140 >Q7A8C7.1 Q7A8C7_STAAN Putative uncharacterized protein SA0037 Length = 142 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 97/139 (69%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK+ +F G+ F FA FDPQYMH+D+EKA+Q RF GIIASG+ T++ Sbjct: 1 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE G YG++++AGT MN++KFIKPVYP + L+ + E+T K K G VTV L Sbjct: 61 ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL 120 Query: 121 STFNQKDEKVFEGELTVLV 139 ST+N+ +E VF+GE+T L+ Sbjct: 121 STYNENEEIVFKGEVTALI 139 >Q7A210.1 Q7A210_STAAW Putative uncharacterized protein MW0030 Length = 142 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 97/139 (69%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK+ +F G+ F FA FDPQYMH+D+EKA+Q RF GIIASG+ T++ Sbjct: 1 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE G YG++++AGT MN++KFIKPVYP + L+ + E+T K K G VTV L Sbjct: 61 ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL 120 Query: 121 STFNQKDEKVFEGELTVLV 139 ST+N+ +E VF+GE+T L+ Sbjct: 121 STYNENEEIVFKGEVTALI 139 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 813,933,016 Number of extensions: 31473762 Number of successful extensions: 59955 Number of sequences better than 1.0e-05: 172 Number of HSP's gapped: 60079 Number of HSP's successfully gapped: 172 Length of query: 141 Length of database: 3,060,696,203 Length adjustment: 104 Effective length of query: 37 Effective length of database: 2,080,910,643 Effective search space: 76993693791 Effective search space used: 76993693791 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)