BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0026.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BJX3.1 C3BJX3_9BACI Putative uncharacterized protein 173 5e-42 C3B386.1 C3B386_BACMY Putative uncharacterized protein 173 5e-42 C3AL29.1 C3AL29_BACMY Putative uncharacterized protein 173 5e-42 C2SJ32.1 C2SJ32_BACCE Putative uncharacterized protein 147 2e-34 C2XT10.1 C2XT10_BACCE Putative uncharacterized protein 105 1e-21 >C3BJX3.1 C3BJX3_9BACI Putative uncharacterized protein Length = 188 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/149 (57%), Positives = 113/149 (75%), Gaps = 2/149 (1%) Query: 1 MSGYEIQQKMISAQTDKWAYVQPASIYHALRKLDKDELVRLEKLEQTGNRSKAIYSITSK 60 MSGYE+QQ M SAQTD WA V PASIYHAL+K+DK+ LV L+ +E+TGNRSKAIYS+T Sbjct: 16 MSGYELQQAMQSAQTDTWAGVFPASIYHALKKMDKEGLVELDAVEKTGNRSKAIYSVTPA 75 Query: 61 GKHEFNSMLISSFKKASVVFPSALYTVLTFMD--EAPKEEIIGALEVQQQAIQTIYDEMK 118 GK EF ++++ SF+++SVVFP+ LYT LTF D E I AL+ Q++ I +Y+ MK Sbjct: 76 GKDEFYTLMLQSFQQSSVVFPTELYTALTFFDTNTVSLEHISSALQDQKKKIIEMYENMK 135 Query: 119 AGQKEKEKYSEVSKNVLLIFENMYEQCEV 147 AGQ KEK ++ ++V LIFEN+YEQCE+ Sbjct: 136 AGQSIKEKMIDIPEHVSLIFENIYEQCEI 164 >C3B386.1 C3B386_BACMY Putative uncharacterized protein Length = 188 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/149 (57%), Positives = 113/149 (75%), Gaps = 2/149 (1%) Query: 1 MSGYEIQQKMISAQTDKWAYVQPASIYHALRKLDKDELVRLEKLEQTGNRSKAIYSITSK 60 MSGYE+QQ M SAQTD WA V PASIYHAL+K+DK+ LV L+ +E+TGNRSKAIYS+T Sbjct: 16 MSGYELQQAMQSAQTDTWAGVFPASIYHALKKMDKEGLVELDAVEKTGNRSKAIYSVTPA 75 Query: 61 GKHEFNSMLISSFKKASVVFPSALYTVLTFMD--EAPKEEIIGALEVQQQAIQTIYDEMK 118 GK EF ++++ SF+++SVVFP+ LYT LTF D E I AL+ Q++ I +Y+ MK Sbjct: 76 GKDEFYTLMLQSFQQSSVVFPTELYTALTFFDTNTVSLEHISSALQDQKKKIIEMYENMK 135 Query: 119 AGQKEKEKYSEVSKNVLLIFENMYEQCEV 147 AGQ KEK ++ ++V LIFEN+YEQCE+ Sbjct: 136 AGQSIKEKMIDIPEHVSLIFENIYEQCEI 164 >C3AL29.1 C3AL29_BACMY Putative uncharacterized protein Length = 188 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/149 (57%), Positives = 113/149 (75%), Gaps = 2/149 (1%) Query: 1 MSGYEIQQKMISAQTDKWAYVQPASIYHALRKLDKDELVRLEKLEQTGNRSKAIYSITSK 60 MSGYE+QQ M SAQTD WA V PASIYHAL+K+DK+ LV L+ +E+TGNRSKAIYS+T Sbjct: 16 MSGYELQQAMQSAQTDTWAGVFPASIYHALKKMDKEGLVELDAVEKTGNRSKAIYSVTPA 75 Query: 61 GKHEFNSMLISSFKKASVVFPSALYTVLTFMD--EAPKEEIIGALEVQQQAIQTIYDEMK 118 GK EF ++++ SF+++SVVFP+ LYT LTF D E I AL+ Q++ I +Y+ MK Sbjct: 76 GKDEFYTLMLQSFQQSSVVFPTELYTALTFFDTNTVSLEHISSALQDQKKKIIEMYENMK 135 Query: 119 AGQKEKEKYSEVSKNVLLIFENMYEQCEV 147 AGQ KEK ++ ++V LIFEN+YEQCE+ Sbjct: 136 AGQSIKEKMIDIPEHVSLIFENIYEQCEI 164 >C2SJ32.1 C2SJ32_BACCE Putative uncharacterized protein Length = 182 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 5/149 (3%) Query: 1 MSGYEIQQKMISAQTDKWAYVQPASIYHALRKLDKDELVRLEKLEQTGNRSKAIYSITSK 60 +SGYEIQQ + Q+ KWA V PASIYHAL+K++ + ++++ +E TG RSK IY IT K Sbjct: 23 LSGYEIQQALNMVQSKKWAEVFPASIYHALKKMENENFIQVKAIEMTGKRSKTIYCITEK 82 Query: 61 GKHEFNSMLISSFKKASVVFPSALYTVLTFM--DEAPKEEIIGALEVQQQAIQTIYDEMK 118 G EF +L SF+K SV+FP LYT LTF+ +E+ +EE++ ALE Q+ I++ Y+EM+ Sbjct: 83 GSQEFKRLLKESFQKTSVMFPKHLYTALTFLSEEESMREEVLEALEEQKSEIRSTYEEMR 142 Query: 119 AGQKEKEKYSEVSKNVLLIFENMYEQCEV 147 G++ K+ V LIFENMYEQCE+ Sbjct: 143 EGERLKDN---APVYVKLIFENMYEQCEM 168 >C2XT10.1 C2XT10_BACCE Putative uncharacterized protein Length = 128 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 54/117 (46%), Positives = 79/117 (67%), Gaps = 5/117 (4%) Query: 33 LDKDELVRLEKLEQTGNRSKAIYSITSKGKHEFNSMLISSFKKASVVFPSALYTVLTFM- 91 ++ + ++++ +E TG RSK IY IT KG EF +L SF+K SV+FP LYT LTF+ Sbjct: 1 MENENFIQVKAIEMTGKRSKTIYCITDKGSQEFKRLLKESFQKTSVMFPKHLYTALTFLS 60 Query: 92 -DEAPKEEIIGALEVQQQAIQTIYDEMKAGQKEKEKYSEVSKNVLLIFENMYEQCEV 147 +E+ +EEI+ ALE Q+ I++ Y+EM+ G++ K+ V LIFENMYEQCE+ Sbjct: 61 EEESMREEILEALEEQKSEIRSTYEEMREGERLKDN---APAYVKLIFENMYEQCEM 114 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.128 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 766,016,428 Number of extensions: 27015957 Number of successful extensions: 75625 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 75702 Number of HSP's successfully gapped: 97 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 125 (52.8 bits)