BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0021.p (301 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KHT3.1 B3KHT3_9BACI Helix-turn-helix-domain containing protein... 200 2e-49 C0D8X3.1 C0D8X3_9CLOT Putative uncharacterized protein 188 5e-46 B0MQQ7.1 B0MQQ7_9FIRM Putative uncharacterized protein 186 2e-45 B0MEC9.1 B0MEC9_9FIRM Putative uncharacterized protein 185 4e-45 Q24TQ5.1 Q24TQ5_DESHY Putative uncharacterized protein 184 1e-44 >B3KHT3.1 B3KHT3_9BACI Helix-turn-helix-domain containing protein AraC type Length = 125 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 92/119 (77%), Positives = 105/119 (88%) Query: 1 MYEWNEMVQLMVDWVDRDLATVPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQRRI 60 MYEWNEMVQ MVDWV+ +L SLLKMSEQ GYSPYYC++QF+ LTGMTLRDY+W RRI Sbjct: 1 MYEWNEMVQHMVDWVEANLTESSSLLKMSEQFGYSPYYCSRQFNQLTGMTLRDYVWTRRI 60 Query: 61 SRAALELRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIRPEV 119 SRAALELRDTD R+LDIA+K+GFSSQEAF+RAF KAF++SP AY+KAPRPIPLAIR E Sbjct: 61 SRAALELRDTDQRVLDIAVKYGFSSQEAFTRAFTKAFQLSPAAYQKAPRPIPLAIRLEC 119 >C0D8X3.1 C0D8X3_9CLOT Putative uncharacterized protein Length = 323 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 176/325 (54%), Gaps = 30/325 (9%) Query: 1 MYEWNEMVQLMVDWVDRDLAT----VPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIW 56 MYEW + +Q++VD +DR + +L ++ LGYS ++ T++F ++GM RDY+ Sbjct: 1 MYEWQKQIQIIVDEIDRCIRNYEDEALTLGDLARSLGYSEFHTTRKFKEISGMQFRDYLR 60 Query: 57 QRRISRAALELRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIR 116 R+++ A E+RD++ IL+IA+ +GFSS EAF+RAF + ++P YRK PRP+ L + Sbjct: 61 HRKLAFALKEVRDSEKSILEIAVAYGFSSHEAFTRAFKGMYGVTPSDYRKHPRPLVLRTK 120 Query: 117 PEVFSPYHYLIKERDKMRQVHLQEAEIKVEF--IPAHKFIGIWDAEVNNYGQFWEH---- 170 +F Y + + E M+ ++K+ F IPAHKF+ I + E N Y FW+ Sbjct: 121 ITLFDRYFFGLGEIGMMKSTD----DVKIYFVTIPAHKFLHIKNYESNGYWDFWQRQSVI 176 Query: 171 -GHDCDEVPGTLESMSHHT-----LPGQIGQTAGWFYQNGRKGYL----------YGIPV 214 G DC+ + G L+S+ G Y N +G L YG + Sbjct: 177 PGQDCETICGLLDSIKGKLDDDGGSEANSGSGQIMAYMNDPQGRLCDWGIPRTECYGARL 236 Query: 215 AADYNGEIPEGMEVRDIPESEYLVFFHPPFDYLKDNGKVMQTVEQVAWNYNPESMGYQWD 274 ADY+GE+P M + D+PE+EYLVF H PFDY ++N V + VE+ +++ GY +D Sbjct: 237 PADYSGEVPPQMLLADVPEAEYLVFEHGPFDYEQENRSVEEIVEKAMADFDFSGTGYCYD 296 Query: 275 EDTKQDYQRHFPEGYGYAVLRPVKK 299 + +F + +RPV+K Sbjct: 297 TTPGRLIYFYFNPERFWKYIRPVRK 321 >B0MQQ7.1 B0MQQ7_9FIRM Putative uncharacterized protein Length = 326 Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 178/327 (54%), Gaps = 34/327 (10%) Query: 3 EWNEMVQLMVDWVDRDLATVP----SLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIWQR 58 EW +Q +VD +DR + + +L ++S+ LGYS YY +++F ++GM LRDY+ R Sbjct: 6 EWCMNIQNIVDDIDRCIRSGEDERLTLGRLSQTLGYSEYYVSRKFSEISGMKLRDYMRYR 65 Query: 59 RISRAALELRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPL--AIR 116 R++ A ELRDTD ILDIAL +GF+ EAF+RAF A+ I+P AYR P P+ L AIR Sbjct: 66 RLAFALRELRDTDKGILDIALDYGFTFHEAFTRAFKAAYGITPSAYRLHPVPVILRTAIR 125 Query: 117 PEVFSPYHYLIKERDKMRQVHLQEAEIKVEF--IPAHKFIGIWDAEVNNYGQFWEH---- 170 P F Y I M Q + ++IKV F IPAHKF+ I + E Y F E Sbjct: 126 P--FDCYLLGIGG-TGMAQTN---SDIKVYFVTIPAHKFLHIRNFESIGYFDFREKQSHI 179 Query: 171 -GHDC-------DEVPGTLESMSHHTLPGQIGQTAGWFYQNGRKGYLYGIPVA------- 215 G DC D + G L+ M + GQ + + + +GIP+A Sbjct: 180 PGQDCETICGLLDSIKGKLDDMGGNEANSGSGQVMAYINEPEGRICSWGIPLAEAYGVRL 239 Query: 216 -ADYNGEIPEGMEVRDIPESEYLVFFHPPFDYLKDNGKVMQTVEQVAWNYNPESMGYQWD 274 ADY+GEIP M++ D+PE EY+VF H PFD+ +N V +EQ +++ E GY+ D Sbjct: 240 PADYSGEIPRQMQIMDVPEGEYIVFEHGPFDFQTENSAVEAKIEQAMKDFDYEKSGYELD 299 Query: 275 EDTKQDYQRHFPEGYGYAVLRPVKKLG 301 + + + + + +RPV+K G Sbjct: 300 KTQGRVFYFYHDCMRYWKYIRPVRKTG 326 >B0MEC9.1 B0MEC9_9FIRM Putative uncharacterized protein Length = 324 Score = 185 bits (470), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 178/328 (54%), Gaps = 36/328 (10%) Query: 1 MYEWNEMVQLMVDWVDRDLAT----VPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIW 56 MYEW +Q +VD +DR + +L +S +LGYS +Y T++F ++G+ RDY+ Sbjct: 1 MYEWQRQIQAIVDEIDRCIMNYNDEALTLCFLSRRLGYSEFYTTRKFKEISGIPFRDYLR 60 Query: 57 QRRISRAALELRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIR 116 R+++ A E+RD++ ILDIA +GFSS EAF+RAF + + ++P YRK P+P+ L + Sbjct: 61 LRKLAFALKEVRDSEKSILDIAFDYGFSSHEAFTRAFKRTYGVTPSEYRKRPKPVVLRTK 120 Query: 117 PEVFSPYHYLIKERDKMRQVHLQEAEIKVEF--IPAHKFIGIWDAEVNNYGQFWEH---- 170 F Y + + E + E +IK+ F IPAHK++ I + E N Y FW+ Sbjct: 121 ITPFDRYFFGLGEIGMKK----SEDDIKIYFVTIPAHKYLHIKNYESNGYWDFWQKQNLI 176 Query: 171 -GHDCDEVPGTLESMSH----------HTLPGQI--------GQTAGWFYQNGRKGYLYG 211 G D + + G L+S+ ++ GQI G+ W + +G Sbjct: 177 PGQDYETICGLLDSIKGKLDDDGGSEPNSGSGQIMAYINDPDGRLCDWGFLRTES---HG 233 Query: 212 IPVAADYNGEIPEGMEVRDIPESEYLVFFHPPFDYLKDNGKVMQTVEQVAWNYNPESMGY 271 + + ADY GE+P M++ D+PE+EY+VF H PFDY ++N V + +E+ ++ E GY Sbjct: 234 VRLPADYTGEVPPQMQLMDVPEAEYVVFEHGPFDYEQENRSVEEKIEKAMAEFDFEGTGY 293 Query: 272 QWDEDTKQDYQRHFPEGYGYAVLRPVKK 299 ++D + +F + +RPV+K Sbjct: 294 RYDTTPGRIIYFYFNPEKHFKYIRPVRK 321 >Q24TQ5.1 Q24TQ5_DESHY Putative uncharacterized protein Length = 327 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 177/326 (54%), Gaps = 32/326 (9%) Query: 1 MYEWNEMVQLMVDWVDRDLAT----VPSLLKMSEQLGYSPYYCTKQFHSLTGMTLRDYIW 56 MYEW++ +Q++VD +D + +L +S +LGYS ++ T++F ++GM RDY+ Sbjct: 5 MYEWHKQIQIIVDEIDESIRQSHDEALTLRFLSHKLGYSEFHTTRKFKEISGMPFRDYLR 64 Query: 57 QRRISRAALELRDTDARILDIALKFGFSSQEAFSRAFVKAFKISPHAYRKAPRPIPLAIR 116 R+++ A E+RD++ +LDIA +GFSS EAF+RAF + + +SP YR+ P P+ L + Sbjct: 65 LRKLAFALKEVRDSERSLLDIAFDYGFSSHEAFTRAFKRTYGVSPREYRRKPVPVVLRTK 124 Query: 117 PEVFSPYHYLIKERDKMRQVHLQEAEIKVEF--IPAHKFIGIWDAEVNNYGQFWEH---- 170 F Y E M+ ++K+ F IPAHKF+ I + E N Y FW+ Sbjct: 125 INPFDRYFLGFGEIGMMKST----VDVKIYFVTIPAHKFLHIKNYESNGYWDFWQKQSLI 180 Query: 171 -GHDCDEVPGTLESMSHHT-------LPGQIGQTAGWFYQ-NGRK---GYL----YGIPV 214 G DC+ + G L+S+ + GQ + + GR G+L YG+ + Sbjct: 181 PGQDCETICGLLDSIKGKLDDDGGKEVNSGSGQLMAYIHDPEGRLCDWGFLRTECYGVRL 240 Query: 215 AADYNGEIPEGMEVRDIPESEYLVFFHPPFDYLKDNGKVMQTVEQVAWNYNPESMGYQWD 274 ADY GE+P M + DIPE+EYLVF H PFDY ++N V + +E ++ GY +D Sbjct: 241 PADYQGEVPPQMLMMDIPEAEYLVFEHGPFDYEQENRSVEEKLEMAMKTFDFSDTGYCFD 300 Query: 275 ED-TKQDYQRHFPEGYGYAVLRPVKK 299 + Y H PE + + +RPV K Sbjct: 301 TTPGRIIYMYHDPERF-FKYIRPVGK 325 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,994,403,042 Number of extensions: 85784950 Number of successful extensions: 192254 Number of sequences better than 1.0e-05: 1582 Number of HSP's gapped: 192840 Number of HSP's successfully gapped: 1582 Length of query: 301 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 166 Effective length of database: 1,788,859,178 Effective search space: 296950623548 Effective search space used: 296950623548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)