BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0016.p
         (52 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3M8.1 B3K3M8_9BACI Putative uncharacterized protein                 67   5e-10

>B3K3M8.1 B3K3M8_9BACI Putative uncharacterized protein
          Length = 62

 Score = 67.0 bits (162), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query: 1  MLIMVALLTRTLVNSVCLMFGMSPDSASSVAMIGMIIAALVMYNRMMKQRRK 52
          MLI VALLT  LV S+  +FGMSP+SAS++  I MIIAA + YNRMMK RRK
Sbjct: 11 MLIAVALLTNNLVTSLAGVFGMSPESASNLGFIAMIIAAFITYNRMMKIRRK 62


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.334    0.135    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 202,527,246
Number of extensions: 3736969
Number of successful extensions: 25282
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 25282
Number of HSP's successfully gapped: 1
Length of query: 52
Length of database: 3,060,696,203
Length adjustment: 25
Effective length of query: 27
Effective length of database: 2,825,170,828
Effective search space: 76279612356
Effective search space used: 76279612356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 126 (53.1 bits)