BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0011.p (240 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1P736.1 C1P736_BACCO Transcriptional regulator, GntR family 407 e-112 C2EDP9.1 C2EDP9_9LACO Transcriptional regulator 376 e-103 C2EH46.1 C2EH46_9LACO Transcriptional regulator 365 2e-99 Q1WS17.1 Q1WS17_LACS1 Transcription regulator, GntR family 364 3e-99 Q38YY7.1 Q38YY7_LACSS Putative transcription regulator, GntR family 338 2e-91 >C1P736.1 C1P736_BACCO Transcriptional regulator, GntR family Length = 241 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/239 (83%), Positives = 214/239 (89%) Query: 1 MSQFVYKQIIDDLKMKIFAGQFADMRLPDERSLSETYQVSRSSIKRALMKMENSGIIFKK 60 M+QFVYKQIIDDLK KIFAGQF DM+LPDERSLSE YQVSRSSIKRAL KM N GIIFKK Sbjct: 1 MAQFVYKQIIDDLKQKIFAGQFPDMKLPDERSLSEAYQVSRSSIKRALSKMANDGIIFKK 60 Query: 61 RGSGTFINPLYIKNESIFNYEGTNLGVTDNFQMDGKKPKVKVLNFEVIRPTEELQRDLFL 120 RGSGTFINPLYIKN SIFNYEGTNLGVTDNF M G+KP KVL FEVI PTEELQR+LFL Sbjct: 61 RGSGTFINPLYIKNASIFNYEGTNLGVTDNFHMYGQKPATKVLCFEVIPPTEELQRNLFL 120 Query: 121 QPHDFVYKIIRLRLFDDEPFMIETGYIPIKIVQNLDQTIIEGSIFHYLEESRNLAVTKSF 180 PHDFVYKI RLRLFD++PFMIETGYIPIKIVQNL IIEGSIF+YLE+ N+AVTKSF Sbjct: 121 NPHDFVYKIRRLRLFDEDPFMIETGYIPIKIVQNLTPEIIEGSIFNYLEDVHNMAVTKSF 180 Query: 181 LSIFAEPSGTHDQELLHLQDNEPVGIMEGIFFLDNGTPFEFSHMRFHYKYLKFNTFVSV 239 LSIFAEPS D+ELL L+++EPVGIMEGIFFLDNGTPFEFSHMR HY+YLKFNTFVSV Sbjct: 181 LSIFAEPSNAKDRELLRLKEHEPVGIMEGIFFLDNGTPFEFSHMRLHYQYLKFNTFVSV 239 >C2EDP9.1 C2EDP9_9LACO Transcriptional regulator Length = 251 Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust. Identities = 178/241 (73%), Positives = 213/241 (88%), Gaps = 1/241 (0%) Query: 1 MSQFVYKQIIDDLKMKIFAGQFADMRLPDERSLSETYQVSRSSIKRALMKMENSGIIFKK 60 M++ +YKQII DLK +IF+G+F +MRLPDER+L+ Y+VSRSSIKRAL +M + GIIFKK Sbjct: 10 MAELIYKQIIADLKKRIFSGEFKEMRLPDERTLALEYEVSRSSIKRALTRMASDGIIFKK 69 Query: 61 RGSGTFINPLYIKNESIFNYE-GTNLGVTDNFQMDGKKPKVKVLNFEVIRPTEELQRDLF 119 RGSGTFINPLY+KNES+FNYE G NLGVTDNF+M+G+KP++KVL FEV +PTEELQRDLF Sbjct: 70 RGSGTFINPLYLKNESVFNYEEGKNLGVTDNFKMNGQKPQIKVLEFEVEKPTEELQRDLF 129 Query: 120 LQPHDFVYKIIRLRLFDDEPFMIETGYIPIKIVQNLDQTIIEGSIFHYLEESRNLAVTKS 179 L+P DFVYKI+RLRLF++EPFMIETGYIPIK+V +L II GSIF+Y++ +NL+VTKS Sbjct: 130 LKPTDFVYKIVRLRLFENEPFMIETGYIPIKLVPDLTPKIISGSIFNYMQNEQNLSVTKS 189 Query: 180 FLSIFAEPSGTHDQELLHLQDNEPVGIMEGIFFLDNGTPFEFSHMRFHYKYLKFNTFVSV 239 FLS+FAEPS T DQELL L+D EP GIMEGIFFLDNGTPFEFS MRFHY+YLKFNTFVS Sbjct: 190 FLSVFAEPSTTRDQELLGLKDTEPAGIMEGIFFLDNGTPFEFSSMRFHYRYLKFNTFVSA 249 Query: 240 Q 240 + Sbjct: 250 E 250 >C2EH46.1 C2EH46_9LACO Transcriptional regulator Length = 248 Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 171/240 (71%), Positives = 205/240 (85%), Gaps = 1/240 (0%) Query: 1 MSQFVYKQIIDDLKMKIFAGQFADMRLPDERSLSETYQVSRSSIKRALMKMENSGIIFKK 60 M++ VYK II DLK KIFAG+F DM+LPDERSL+E Y VSRSS+KRAL KM N GIIFKK Sbjct: 8 MAELVYKNIISDLKEKIFAGKFTDMKLPDERSLAEQYNVSRSSVKRALNKMSNEGIIFKK 67 Query: 61 RGSGTFINPLYIKNESIFNYE-GTNLGVTDNFQMDGKKPKVKVLNFEVIRPTEELQRDLF 119 RGSGTFINPLY+KNESIFNYE G+NLG++DNF++ GKKP+ K+L+F+VI+PT ELQRDLF Sbjct: 68 RGSGTFINPLYLKNESIFNYEEGSNLGISDNFRLKGKKPQTKILDFQVIKPTSELQRDLF 127 Query: 120 LQPHDFVYKIIRLRLFDDEPFMIETGYIPIKIVQNLDQTIIEGSIFHYLEESRNLAVTKS 179 L P DFVYKIIRLRLF+DEPFMIETGYIPIKI+ L +T +E SIF Y++ N +KS Sbjct: 128 LSPEDFVYKIIRLRLFEDEPFMIETGYIPIKILPKLSRTQLESSIFAYIQSELNQTASKS 187 Query: 180 FLSIFAEPSGTHDQELLHLQDNEPVGIMEGIFFLDNGTPFEFSHMRFHYKYLKFNTFVSV 239 F+SI+AEPS + DQ LL L++NEPV +MEGIFFLDNGTPFEFS MR H+KYLKFNTF+++ Sbjct: 188 FMSIYAEPSTSEDQNLLKLKENEPVSVMEGIFFLDNGTPFEFSQMRLHFKYLKFNTFINL 247 >Q1WS17.1 Q1WS17_LACS1 Transcription regulator, GntR family Length = 241 Score = 364 bits (935), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 171/240 (71%), Positives = 205/240 (85%), Gaps = 1/240 (0%) Query: 1 MSQFVYKQIIDDLKMKIFAGQFADMRLPDERSLSETYQVSRSSIKRALMKMENSGIIFKK 60 M++ VYK II DLK KIFAG+F DM+LPDERSL+E Y VSRSS+KRAL KM N GIIFKK Sbjct: 1 MAELVYKNIISDLKEKIFAGKFTDMKLPDERSLAEQYNVSRSSVKRALNKMSNEGIIFKK 60 Query: 61 RGSGTFINPLYIKNESIFNYE-GTNLGVTDNFQMDGKKPKVKVLNFEVIRPTEELQRDLF 119 RGSGTFINPLY+KNESIFNYE G+NLG++DNF++ GKKP+ K+L+F+VI+PT ELQRDLF Sbjct: 61 RGSGTFINPLYLKNESIFNYEEGSNLGISDNFRLKGKKPQTKILDFQVIKPTSELQRDLF 120 Query: 120 LQPHDFVYKIIRLRLFDDEPFMIETGYIPIKIVQNLDQTIIEGSIFHYLEESRNLAVTKS 179 L P DFVYKIIRLRLF+DEPFMIETGYIPIKI+ L +T +E SIF Y++ N +KS Sbjct: 121 LSPEDFVYKIIRLRLFEDEPFMIETGYIPIKILPKLSRTQLESSIFAYIQSELNQTASKS 180 Query: 180 FLSIFAEPSGTHDQELLHLQDNEPVGIMEGIFFLDNGTPFEFSHMRFHYKYLKFNTFVSV 239 F+SI+AEPS + DQ LL L++NEPV +MEGIFFLDNGTPFEFS MR H+KYLKFNTF+++ Sbjct: 181 FMSIYAEPSTSEDQNLLKLKENEPVSVMEGIFFLDNGTPFEFSQMRLHFKYLKFNTFINL 240 >Q38YY7.1 Q38YY7_LACSS Putative transcription regulator, GntR family Length = 243 Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 162/239 (67%), Positives = 196/239 (82%) Query: 1 MSQFVYKQIIDDLKMKIFAGQFADMRLPDERSLSETYQVSRSSIKRALMKMENSGIIFKK 60 M+ VY+ II DLK I AG + M+LPDER+L+E YQVSRSS+KRAL M N GIIFKK Sbjct: 1 MADLVYQTIIADLKKAINAGAYPSMKLPDERTLTEHYQVSRSSVKRALNVMANQGIIFKK 60 Query: 61 RGSGTFINPLYIKNESIFNYEGTNLGVTDNFQMDGKKPKVKVLNFEVIRPTEELQRDLFL 120 RGSGTFINPLY+K+ S FNY G+NLGVTD+F+ +KP +K+L+F+VI+P+ ELQRDLFL Sbjct: 61 RGSGTFINPLYLKSGSFFNYSGSNLGVTDSFKAGDRKPGIKLLDFQVIKPSAELQRDLFL 120 Query: 121 QPHDFVYKIIRLRLFDDEPFMIETGYIPIKIVQNLDQTIIEGSIFHYLEESRNLAVTKSF 180 +P DFVY+I RLRLFDDEPFMIETG+IPIKI+ L + II GSIF+YLE +N VT++F Sbjct: 121 EPDDFVYEIKRLRLFDDEPFMIETGFIPIKIMPGLTEKIISGSIFNYLETEKNQEVTRAF 180 Query: 181 LSIFAEPSGTHDQELLHLQDNEPVGIMEGIFFLDNGTPFEFSHMRFHYKYLKFNTFVSV 239 LSIFAEPS DQ+ L L+ EPVGIMEGIFFLD+GTPFEFS MR HY+Y+K+NTFVSV Sbjct: 181 LSIFAEPSTQDDQDQLQLKPTEPVGIMEGIFFLDDGTPFEFSTMRLHYQYMKYNTFVSV 239 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.141 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,405,521,166 Number of extensions: 59738468 Number of successful extensions: 128879 Number of sequences better than 1.0e-05: 2340 Number of HSP's gapped: 127967 Number of HSP's successfully gapped: 2340 Length of query: 240 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 108 Effective length of database: 1,817,122,223 Effective search space: 196249200084 Effective search space used: 196249200084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)