BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0006.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3A8.1 B3K3A8_9BACI Binding-protein-dependent transport system... 467 e-130 B1D7W3.1 B1D7W3_9BACL Binding-protein-dependent transport system... 388 e-106 A9KI81.1 A9KI81_CLOPH Binding-protein-dependent transport system... 274 7e-72 B1DAC4.1 B1DAC4_9BACL Binding-protein-dependent transport system... 265 3e-69 C0D8C5.1 C0D8C5_9CLOT Putative uncharacterized protein 264 8e-69 >B3K3A8.1 B3K3A8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/275 (82%), Positives = 243/275 (88%) Query: 1 MNKAVFNKXXXXXXXXXXXXXXXXPFLWMISTSFKTPAEVFQYPIQWIPVHFNWSHHVKV 60 M KA++ K PFLWMISTSFK PAEVFQYPI+WIP F W HHVKV Sbjct: 1 MTKALYTKIIVTFIMLFFSVVMIVPFLWMISTSFKMPAEVFQYPIKWIPAQFMWDHHVKV 60 Query: 61 WTGENSFMLYYLNSLKVSVLSTIGAVTLSSLAAYGFARIQFRGRDTMFMVYLSMMMVPPQ 120 WTG NSF YYLNSLKV+++ST+GAV LS+LAAYGFARI+F+GR+ MFM+YLSMMMVPPQ Sbjct: 61 WTGANSFGHYYLNSLKVALISTVGAVLLSALAAYGFARIEFKGRNAMFMIYLSMMMVPPQ 120 Query: 121 VLFVPKFIMFDWAGIYNTHWALILPGFFTIFGVFMMRQFFLSVPYEISEAAFIDGAGHFR 180 VLFVPKFIMFDW GIYNTHWALILPG FTIFGVFMMRQFFLSVP+EISEAAFIDGAGHFR Sbjct: 121 VLFVPKFIMFDWVGIYNTHWALILPGVFTIFGVFMMRQFFLSVPHEISEAAFIDGAGHFR 180 Query: 181 IFSRIILPMAKPSIATLAIIDFSWHWNDYENALVFLIDHDLFTVPLGLQNFILENNVDYN 240 IFSRIILPMAKPS+ATLAIIDFSWHWNDYENALVFLID DL+TVPLGLQNFILEN VDYN Sbjct: 181 IFSRIILPMAKPSLATLAIIDFSWHWNDYENALVFLIDQDLYTVPLGLQNFILENTVDYN 240 Query: 241 GMMAAATAGIIPMIIVFLIGQKYIIEGVASSAVKG 275 GMMAAATAGIIPMI+VFLIGQKYII+GVASSAVKG Sbjct: 241 GMMAAATAGIIPMILVFLIGQKYIIQGVASSAVKG 275 >B1D7W3.1 B1D7W3_9BACL Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 177/251 (70%), Positives = 221/251 (88%), Gaps = 3/251 (1%) Query: 25 PFLWMISTSFKTPAEVFQYPIQWIPVHFNWSHHVKVWTGENSFMLYYLNSLKVSVLSTIG 84 PFLWMISTSF+TP+EVF+ QW+P + S H ++W+G +F+ YYLNSLK+SV+ T G Sbjct: 28 PFLWMISTSFQTPSEVFR---QWLPSKLDLSSHKRIWSGSYNFLPYYLNSLKISVIGTAG 84 Query: 85 AVTLSSLAAYGFARIQFRGRDTMFMVYLSMMMVPPQVLFVPKFIMFDWAGIYNTHWALIL 144 AV +S+LAAYGFAR +F+GR+T+FMVYLSMMM+PPQV+FVPKFIMF+W IYNTHWALIL Sbjct: 85 AVFMSALAAYGFARTEFKGRNTLFMVYLSMMMIPPQVIFVPKFIMFNWLHIYNTHWALIL 144 Query: 145 PGFFTIFGVFMMRQFFLSVPYEISEAAFIDGAGHFRIFSRIILPMAKPSIATLAIIDFSW 204 P F+IFGVFM+RQFFL +P EI+E+AF+DGAGHFRIF R++LP+AKP++AT AIIDFSW Sbjct: 145 PAMFSIFGVFMLRQFFLGIPKEITESAFLDGAGHFRIFFRLVLPLAKPALATFAIIDFSW 204 Query: 205 HWNDYENALVFLIDHDLFTVPLGLQNFILENNVDYNGMMAAATAGIIPMIIVFLIGQKYI 264 WNDYENALVFL L+T+PLGLQNF+LENNVDYNGMMAA++A I+PMI++FL+GQKYI Sbjct: 205 QWNDYENALVFLQSPKLYTIPLGLQNFVLENNVDYNGMMAASSAAIVPMILIFLLGQKYI 264 Query: 265 IEGVASSAVKG 275 I+G++SSAVKG Sbjct: 265 IQGISSSAVKG 275 >A9KI81.1 A9KI81_CLOPH Binding-protein-dependent transport systems inner membrane component Length = 281 Score = 274 bits (700), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 125/252 (49%), Positives = 187/252 (74%), Gaps = 1/252 (0%) Query: 25 PFLWMISTSFKTPAEVFQYPIQWIPVHFN-WSHHVKVWTGENSFMLYYLNSLKVSVLSTI 83 P LWMIS S K A+VF+YP++WIP FN +++ +VW+G +F ++YLNS+KV++L+T Sbjct: 30 PLLWMISASMKVEADVFKYPVEWIPKRFNVIANYKEVWSGRYNFGIFYLNSIKVTLLTTF 89 Query: 84 GAVTLSSLAAYGFARIQFRGRDTMFMVYLSMMMVPPQVLFVPKFIMFDWAGIYNTHWALI 143 V +S++ AY F++I+F+ RD +F++Y+SMMM+P QV +PKF++F +++ H LI Sbjct: 90 LQVLISAMGAYAFSKIEFKFRDGLFLLYISMMMIPDQVTIIPKFMIFRSLKLFDKHLGLI 149 Query: 144 LPGFFTIFGVFMMRQFFLSVPYEISEAAFIDGAGHFRIFSRIILPMAKPSIATLAIIDFS 203 L G F+I+G+F+++QF ++P +SE+A IDGAGH RIF RIILP+ KP++ATLA++ F Sbjct: 150 LLGSFSIYGMFLLKQFMTAIPTALSESAKIDGAGHGRIFLRIILPVTKPALATLAMLKFV 209 Query: 204 WHWNDYENALVFLIDHDLFTVPLGLQNFILENNVDYNGMMAAATAGIIPMIIVFLIGQKY 263 W WNDY+N L+FL L+T+PLG+ F+ E Y+ +M AA IIP++IVFL GQKY Sbjct: 210 WTWNDYQNPLIFLKTEKLYTIPLGMTKFMTEYTSFYSLIMVAAVCAIIPLLIVFLFGQKY 269 Query: 264 IIEGVASSAVKG 275 I++G+ AVKG Sbjct: 270 IMDGMMVGAVKG 281 >B1DAC4.1 B1DAC4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 292 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 180/251 (71%), Gaps = 1/251 (0%) Query: 25 PFLWMISTSFKTPAEVFQYPIQWIPVHFNWSHHVKVWTGENSFMLYYLNSLKVSVLSTIG 84 PFLWM+S S K+ AE+F +PIQWIP HF WS++ KVWT E F YYLN++K++VL+T+ Sbjct: 43 PFLWMLSASVKSEAEIFSFPIQWIPSHFFWSNYSKVWT-ELPFFTYYLNTIKIAVLTTLL 101 Query: 85 AVTLSSLAAYGFARIQFRGRDTMFMVYLSMMMVPPQVLFVPKFIMFDWAGIYNTHWALIL 144 + S AAY FA+++F RD +F +Y++ MMVP QV+ +P+F++ G+ ++HW+LIL Sbjct: 102 QIITCSTAAYAFAKVKFPERDKLFFLYVATMMVPYQVMMIPQFVLIKKIGLMDSHWSLIL 161 Query: 145 PGFFTIFGVFMMRQFFLSVPYEISEAAFIDGAGHFRIFSRIILPMAKPSIATLAIIDFSW 204 G F+ FGVF+ RQFF+S+P E+SEAA IDG F I++RIILP+ +P+IA+L I F Sbjct: 162 LGAFSPFGVFLFRQFFMSIPEELSEAARIDGLSEFGIYARIILPLIRPAIASLTIFTFMH 221 Query: 205 HWNDYENALVFLIDHDLFTVPLGLQNFILENNVDYNGMMAAATAGIIPMIIVFLIGQKYI 264 WND+ L++L LFT+ LG+Q+F E+ +Y +MAAA IIP I+++ + Q + Sbjct: 222 SWNDFLGPLIYLNSDSLFTLQLGMQHFQTEHATEYGPLMAAAVCAIIPTIVIYFLAQDHF 281 Query: 265 IEGVASSAVKG 275 +EG+++ AVKG Sbjct: 282 VEGISAGAVKG 292 >C0D8C5.1 C0D8C5_9CLOT Putative uncharacterized protein Length = 277 Score = 264 bits (674), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 125/251 (49%), Positives = 180/251 (71%), Gaps = 1/251 (0%) Query: 25 PFLWMISTSFKTPAEVFQYPIQWIPVHFNWSHHVKVWTGENSFMLYYLNSLKVSVLSTIG 84 PFLWM+STSFK +V ++P++ IP +N+ ++V V+T ++ F YYLNS+KV+ + +G Sbjct: 28 PFLWMLSTSFKYEIDVMEFPVRLIPKKWNFQNYVTVFT-KSDFPGYYLNSIKVTFTTIVG 86 Query: 85 AVTLSSLAAYGFARIQFRGRDTMFMVYLSMMMVPPQVLFVPKFIMFDWAGIYNTHWALIL 144 + ++++AAY FAR+ FRG+ +F +YLS MM+P QVL +PK+I F I NTH ALI+ Sbjct: 87 ELCITTMAAYAFARLNFRGKKFLFTMYLSTMMIPGQVLLLPKYIYFSQLHITNTHLALIM 146 Query: 145 PGFFTIFGVFMMRQFFLSVPYEISEAAFIDGAGHFRIFSRIILPMAKPSIATLAIIDFSW 204 PG F++FGV +MRQ F+ +PYE +EAA+IDGA H IF ++ILP+AKP + T ++ F+W Sbjct: 147 PGLFSVFGVLLMRQVFMQIPYEYTEAAYIDGASHPTIFLKLILPLAKPGLMTALLLAFTW 206 Query: 205 HWNDYENALVFLIDHDLFTVPLGLQNFILENNVDYNGMMAAATAGIIPMIIVFLIGQKYI 264 WNDY N LVFL + LFT+ +GLQ F + + +Y +MA AT +IP+I +FL QKY Sbjct: 207 SWNDYINPLVFLSNDKLFTLTVGLQRFQEDASTNYALIMAGATVSLIPLIALFLFTQKYF 266 Query: 265 IEGVASSAVKG 275 IE AS+ VKG Sbjct: 267 IESFASAGVKG 277 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.142 0.456 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,504,502,334 Number of extensions: 59796236 Number of successful extensions: 205652 Number of sequences better than 1.0e-05: 6267 Number of HSP's gapped: 196572 Number of HSP's successfully gapped: 6268 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)