BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0005.p (1032 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator ... 950 0.0 A3I5U2.1 A3I5U2_9BACI Sensor protein EC=2.7.13.3 681 0.0 B1HZJ7.1 B1HZJ7_LYSSC Sensor protein EC=2.7.13.3 661 0.0 Q4MVQ6.1 Q4MVQ6_BACCE Sensor protein EC=2.7.13.3 661 0.0 C3ERU4.1 C3ERU4_BACTK Putative uncharacterized protein 659 0.0 >C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator EC=2.7.3.- Length = 1024 Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1011 (48%), Positives = 671/1011 (66%), Gaps = 15/1011 (1%) Query: 23 RLVWTNYLTTTDYAKAPAAQDGVLDLRNFSFTGHQTLQLKGEWTFYPSVLLVSGAGSDNG 82 RL+W ++LTT DYA+ P A GVLDLR + F+ +QTL+L GEW F+PS + NG Sbjct: 23 RLLWMSFLTTFDYAEKPVAVQGVLDLRGWEFSEYQTLRLDGEWEFFPSQFI-----EGNG 77 Query: 83 NAPAAQAEKVFVPDLWDGYFPQD---GSAFHYGTYRLQIRLDQETKQTFAMKISRIGNAS 139 + VP+ WD F + +FH+GTYRL+I LD E +QT +I+ + AS Sbjct: 78 LKKPEGQTYLQVPNKWDEAFVHEQGLSDSFHFGTYRLRILLDPEQEQTLGFRINELRTAS 137 Query: 140 SVYVNGQLLASSGHPSSDPGKHQAQNVPYTVTIPAGSPTLDLVIEVSHDAGKGGIERAIR 199 +VY NG+L+A +G P++ +HQA+N+PYTV + ++L+I VS+DAG GGI + IR Sbjct: 138 TVYANGKLVAQAGQPATSNIEHQARNIPYTVKLTPQQGQVELLIHVSNDAGAGGITKPIR 197 Query: 200 FGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLLSS-NKGLSYFAFFMIFTLFSVL 258 FGT++A+Q R I++LY ++L L + NKGL YF+ M+ +F+V+ Sbjct: 198 FGTIEAVQMRTILSISLQLLLLVVFLIHSLYALLLYFLGARNKGLVYFSLVMVCGIFTVV 257 Query: 259 ISDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPSRVPKVTTHIIAFCWTLY 318 +DD+LLF W W +K+ YL Y+G AF+ L + L P+ + + + +LY Sbjct: 258 TADDKLLFVWLQFDYDWTVKLTYLVYVGAVAFIPPLFHHLLPAYLNRRILQGFSGLCSLY 317 Query: 319 ALFILISPSSYIQAXXXXXXXXXXXXXXXXGHILRRAIQQKEDVIFLLLACIGIGINILW 378 A+FIL+ P+ I A +IL +AI+ KED+IFLLLAC+ +G+N++W Sbjct: 318 AIFILLVPAGTILAMIRMLSIVLLLSVIISAYILWKAIRDKEDIIFLLLACLFVGVNVIW 377 Query: 379 S-AFMHLSPENELIHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLAGKLQLEDKRKDEFL 437 + A+ L E IHYP ++ LA KLQ EDKRKDEFL Sbjct: 378 TIAYSILGWE--FIHYPFNLIFAVLAFAAYWFRRFFRATTETKHLAEKLQQEDKRKDEFL 435 Query: 438 VNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRMSFMLDDLIDITRL 497 VNTSHELRNPL GI + Q I++D ++P+H + ++R++I+ VS R++ MLDDL+D+TRL Sbjct: 436 VNTSHELRNPLHGIINITQAIIEDTNNPLHEEHKKRLDILLHVSRRLTLMLDDLLDVTRL 495 Query: 498 KEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAVQADEQRVIQILFN 557 KE +I L K + LQS+ +GV DM K+MLDGKP+ L+ +I+D+FPAV+ DE R+IQILFN Sbjct: 496 KENSIRLHEKKLNLQSIFAGVFDMAKLMLDGKPIALQVEIDDSFPAVRGDENRLIQILFN 555 Query: 558 LLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFHPYEQADNHFKRASG 617 L+HNA+KFTD+G IT+RA A++QVEDTG+G+ E+AL IF PYEQA+ + RASG Sbjct: 556 LVHNAIKFTDEGTITIRATTSNGFAQIQVEDTGVGVEEKALQTIFQPYEQAELNAIRASG 615 Query: 618 GFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEEDFQPSSLTNLSVPL 677 GFGLGL I +QLVELHGGT++ +S+LG+ + F FTLPL + E+ + S+ Sbjct: 616 GFGLGLHISKQLVELHGGTLSVQSTLGKGSAFTFTLPLASDSVLIEENSAQTWMQTSL-- 673 Query: 678 DEIAAAAEPPVERGISPNESGAPACRLLIVDDDAVNLNVLAQMLETEGYVIDAVTSAELA 737 E+AAA + S R+++VDDD++NLN+L++MLE++ Y + TSA+ A Sbjct: 674 -EMAAATTDRIITSTETVSSMNRRARIIVVDDDSINLNILSKMLESDQYEVSTATSAQQA 732 Query: 738 LAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLLTARVRTEDILTGFRAG 797 L+ +R DLVI+DVMMPH+SGYELT +IRERF++ ELP+LLLTAR R+EDI+ GF+AG Sbjct: 733 LSILERNPVDLVISDVMMPHVSGYELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAG 792 Query: 798 ANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQPHFLFNTLNSIAALGM 857 ANDYVKKPVDAWELKARV ALT+ K S D+RLRME AWLQSQI+PHFLFN LNSIAALG+ Sbjct: 793 ANDYVKKPVDAWELKARVKALTEFKISFDERLRMEGAWLQSQIEPHFLFNALNSIAALGL 852 Query: 858 IDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVYIEKERFGSRLTVVWNI 917 DF KMQTLL+EFSNYLRLSFDF N+ P++ L EL LVRSY+YIEK+RFG RL V W++ Sbjct: 853 QDFTKMQTLLEEFSNYLRLSFDFHNSEPVISLHDELDLVRSYLYIEKQRFGDRLQVEWDL 912 Query: 918 ESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEMVXXXXXXXXXXXXXXY 977 + +D +PPLSIQPLVENAIKHGL+ R GGTV +++ E Sbjct: 913 DPDLDFCLPPLSIQPLVENAIKHGLMQRTSGGTVWIHIKDNEEYFEISIQDDGEGIAEED 972 Query: 978 LSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGTCVSFQIP 1028 L+QL + + R+ +GL NI RRL Q + GL I SS +QGT V+F IP Sbjct: 973 LNQLFSQTRHGKKRASVGLRNIERRLRQLYNQGLTINSSPEQGTIVTFGIP 1023 >A3I5U2.1 A3I5U2_9BACI Sensor protein EC=2.7.13.3 Length = 1021 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/1027 (38%), Positives = 586/1027 (57%), Gaps = 50/1027 (4%) Query: 23 RLVWTNYLTTTDYAKAPAAQDGVLDLRNFSFTGHQTLQLKGEWTFYPSVLLVSGAGSDNG 82 R++W T D P A G +D+RNF F L L GEW+FYPS L+ S+ Sbjct: 21 RILWLQSFTQPD---QPYAMKGQMDVRNFDFQ-QSALTLDGEWSFYPSQWLMDNHSSNQ- 75 Query: 83 NAPAAQAEKVFVPDLWDGYFPQ-DGSAFHYGTYRLQIRLDQETKQTFAMKISRIGNASSV 141 + VPD WD F + + S F YG+Y+L+I ++ + +TF++++ I +A+ + Sbjct: 76 -------TYIQVPDGWDKVFQEGEQSPFGYGSYQLKILVNPDETKTFSIRVPSIRSAAEI 128 Query: 142 YVNGQLLASSGHPSSDPGKHQAQNVPYTVTIPA-GSPTLDLVIEVSH--DAGKGGIERAI 198 YVN + +A SG + + A+NVP+T + G ++L+I+V++ D GGI R+I Sbjct: 129 YVNDRFIAKSGELGENRAQTVAKNVPFTASFETNGESEIELIIQVANFQDPRNGGIVRSI 188 Query: 199 RFGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLL-SSNKGLSYFAFFMIFTLFSV 257 +FG D I + ++A+Y VIL L+ + +K L +F+ + +F Sbjct: 189 KFGQEDVINRETQLSVTMQLLVAVVLVLHAIYSVILYLVGNKDKRLLFFSILTVSIMFYY 248 Query: 258 LI-SDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPSRVPKVTTHIIAFCWT 316 L+ SDD+LL WF + W +V+L+ + + + I P + ++ H+ F Sbjct: 249 LLGSDDKLLSFWFPINYDWGFILVHLSMVSIGYSLLQCIEHWLPPHL-QLYKHVYTFFSM 307 Query: 317 LYALFILISPSSYI---QAXXXXXXXXXXXXXXXXGHILRRAIQQKEDVIFLLLACIGIG 373 + L P Y+ QA ++ ++I+ +F+LL + Sbjct: 308 VAILLAFTLPIRYLVSMQAFYMVILGAPIVITLIL--MIGKSIKDIRRNVFILLGLVAFV 365 Query: 374 INILWSAFMHLSPENELIHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLAGKLQLEDKRK 433 +I+W + L ++I YP + LA KLQ DK K Sbjct: 366 NSIIWDVIL-LITGIKIISYPFDLIVTIACLATLWFKDYAKVHADTKELAHKLQEIDKIK 424 Query: 434 DEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRMSFMLDDLID 493 DEFL +TSHELRNPL I M + +LD ++ + K +E + V +RMS +L+DL+D Sbjct: 425 DEFLASTSHELRNPLHSIINMSKAVLDREAKTLTTKSVNDLETVLSVGNRMSLLLNDLLD 484 Query: 494 ITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAVQADEQRVIQ 553 + RLK+ T L++ V + S+ GV DM++ M++GKPVQ I + F VQADE RVIQ Sbjct: 485 VMRLKDDTQQLQLSMVSIHSIAVGVFDMLRFMIEGKPVQFVLKIPEDFQRVQADENRVIQ 544 Query: 554 ILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFHPYEQADNHFK 613 I+FNL+HNAVKFT++G IT+ + + MA + + DTGIG+ +E + +IF PYEQ Sbjct: 545 IVFNLVHNAVKFTNEGSITISSYTRNGMANIVITDTGIGVDDETMRRIFEPYEQGTISKT 604 Query: 614 RASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEEDFQPSSLTNL 673 GGFGLGL+IC++L+E HGGT+ +S +G+ + F FTLPL D +N+ Sbjct: 605 MVEGGFGLGLNICKRLIEFHGGTLEVQSVVGQGSTFTFTLPLADE------------SNV 652 Query: 674 SVPLDEIAAAAEPPVERGIS---------PNESGAPACRLLIVDDDAVNLNVLAQMLETE 724 VPL+++ + ER S E P R+L+VDD+ +NL V+ +L E Sbjct: 653 QVPLEKVRQSVSKSSERTASLQAALEDDQSAEWNHP--RILVVDDEPINLRVVETILANE 710 Query: 725 GYVIDAVTSAELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLLTAR 784 Y I VTS AL + +DLVI+DVMMP MSGYEL LIR++F+I++LPILLLTAR Sbjct: 711 QYDIVTVTSGLDALVSIQSHEWDLVISDVMMPKMSGYELVRLIRKQFSITDLPILLLTAR 770 Query: 785 VRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQPHF 844 + +++ GF AGANDYV KPVDA EL++RV AL ++K SI +R RME+AWLQ+QI+PHF Sbjct: 771 SQPQNLEKGFLAGANDYVTKPVDALELRSRVAALIKVKRSIQERHRMEAAWLQAQIEPHF 830 Query: 845 LFNTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVYIEK 904 LFNTLN+I L +D + L++ S++LR S++F+N LVPLE+EL+L+++Y+YI++ Sbjct: 831 LFNTLNAILTLSEMDSERTSRLVEALSDFLRESYNFQNVEALVPLENELTLIQAYLYIQQ 890 Query: 905 ERFGSRLTVVWNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEMVXX 964 ERFG R+ V W++E+ D+LIP L+IQPLVENA++HG+L R GGT+ + + + Sbjct: 891 ERFGDRIHVKWDLEASTDVLIPSLTIQPLVENALQHGILKRTEGGTIHIRIFESESQLEI 950 Query: 965 XXXXXXXXXXXXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGTCVS 1024 LSQLL + + S IGL+N + RL Q +G GL I S L +GT VS Sbjct: 951 TVSDNGVGMDELRLSQLLQTTQQPS--KSIGLMNTHLRLQQHYGQGLTITSKLHEGTSVS 1008 Query: 1025 FQIPYQK 1031 F + +K Sbjct: 1009 FVVLVKK 1015 >B1HZJ7.1 B1HZJ7_LYSSC Sensor protein EC=2.7.13.3 Length = 1015 Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1017 (38%), Positives = 588/1017 (57%), Gaps = 30/1017 (2%) Query: 23 RLVWTNYLTTTDYAKAPAAQDGVLDLRNFSFTGHQTLQLKGEWTFYPSVLLVSGAGSDNG 82 R++W + T D P+A G +D+R+F F H L L GEW+F+PS L+ S++ Sbjct: 15 RMLWLHSFTQPD---QPSAIKGQIDVRDFDFQ-HDALTLDGEWSFHPSQWLMDHQSSNHS 70 Query: 83 NAPAAQAEKVFVPDLWDGYFPQ-DGSAFHYGTYRLQIRLDQETKQTFAMKISRIGNASSV 141 + VPD WD F + + S F YG+Y+L+I ++ E +TF++++ I +A+ + Sbjct: 71 --------YIQVPDGWDNVFRKGEQSPFGYGSYQLKILVNTEEARTFSLRVPSIRSAAEI 122 Query: 142 YVNGQLLASSGHPSSDPGKHQAQNVPYTVTIPA-GSPTLDLVIEVSH--DAGKGGIERAI 198 YVN +L+A SG + + A+N+P+T + G ++LVI+V++ D GGI R+I Sbjct: 123 YVNDRLIAKSGELGENRAQTMAKNIPFTASFEINGESEIELVIQVANFQDPRNGGIVRSI 182 Query: 199 RFGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLL-SSNKGLSYFAFFMIFTLFSV 257 +FG D I + ++A+Y VIL L+ + +K L +F+ + +F Sbjct: 183 KFGQEDVINRETQLSITMQLFVAVVLVLHAIYSVILYLVGNKDKRLLFFSILTVNIMFYY 242 Query: 258 LI-SDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPSRVPKVTTHIIAFCWT 316 L+ SDD+LL WF + W +V+L+ +G+ + I P + FC Sbjct: 243 LLGSDDKLLSFWFPINYDWGFILVHLSMVGIGYSLLQCIEHWLPPHLQHYKRMYTFFC-- 300 Query: 317 LYALFILIS-PSSYIQAXXXXXXXXXXXXXXXXGHILR-RAIQQKEDVIFLLLACIGIGI 374 L A+ + + P Y+ + ++ ++I+ +F+LL + Sbjct: 301 LVAILLAFTLPIRYLVSIQAFYMVILGAPIVITLILMTGKSIKDIRSNVFILLGLVAFVN 360 Query: 375 NILWSAFMHLSPENELIHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLAGKLQLEDKRKD 434 +ILW M L ++I YP + LA KLQ DK KD Sbjct: 361 SILWDV-MLLITGIKVISYPFDLMVTIACLATLWFKDYAKVHADTKKLAHKLQETDKIKD 419 Query: 435 EFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRMSFMLDDLIDI 494 EFL +TSHELRNPL I M + +LD +++ + K +E + V +RMS +L+DL+D+ Sbjct: 420 EFLASTSHELRNPLHSIINMSKAVLDREANRLTAKSVTDLETVLSVGNRMSLLLNDLLDV 479 Query: 495 TRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAVQADEQRVIQI 554 LK+ T L++ V + S+ GV DM++ M++GKPVQ I + F V ADE RVIQI Sbjct: 480 VSLKDNTQQLQLSRVSIHSIAVGVFDMLRFMIEGKPVQFVLKIPEDFQRVLADENRVIQI 539 Query: 555 LFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFHPYEQADNHFKR 614 +FNL+HNAVKFT++G IT+ + + MA + + DTGIG+ +E + +IF YEQ Sbjct: 540 VFNLVHNAVKFTNEGSITISSYTRNGMANIVITDTGIGVDDETMRRIFERYEQGTISKTM 599 Query: 615 ASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEEDFQPSSLTNLS 674 GGFGLGL+IC++L+ELHGGT+ A+S +G+ + F FTLPL + +E + + Sbjct: 600 VEGGFGLGLNICKRLIELHGGTLKAQSIVGQGSTFTFTLPLAVESNVQEPLEKGRQSVSK 659 Query: 675 VPLDEIAAAAEPPVERGISPNESGAPACRLLIVDDDAVNLNVLAQMLETEGYVIDAVTSA 734 +P E + +E S E P R+L+VDD+ +NL V+ +L E Y I VTS Sbjct: 660 IP--ERITPLQTDLEHEQS-TEFNHP--RILVVDDEPINLRVVETILANEPYDIVTVTSG 714 Query: 735 ELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLLTARVRTEDILTGF 794 AL + +DLVI+DVMMP MSGYEL LIR++F+I++LP+LLLTAR + +D+ GF Sbjct: 715 IEALVCIQSHEWDLVISDVMMPKMSGYELVRLIRKQFSITDLPVLLLTARSQPQDLENGF 774 Query: 795 RAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQPHFLFNTLNSIAA 854 AGANDYV KPVDA EL++RV AL ++K SI +R RME+AWLQ+QI+PHFLFNTLN+I Sbjct: 775 LAGANDYVTKPVDALELRSRVAALIKVKRSIQERHRMEAAWLQAQIEPHFLFNTLNAILT 834 Query: 855 LGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVYIEKERFGSRLTVV 914 L +D + L++ S++LR S++F+N LVPLE+EL+L+++Y+YI++ERFG R+ V Sbjct: 835 LSEMDSERTSRLVEALSDFLRESYNFQNVEALVPLENELTLIQAYLYIQQERFGDRIQVK 894 Query: 915 WNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEMVXXXXXXXXXXXX 974 W++E+ D+LIP L+IQPLVENA++HG+L R GGT+ + + + Sbjct: 895 WDLEASTDVLIPSLTIQPLVENALQHGILKRTEGGTIHIRIYESESQLEITVSDNGVGID 954 Query: 975 XXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGTCVSFQIPYQK 1031 LSQLL + S IGL+N + RL Q +G GL I S L +GT VSF + +K Sbjct: 955 EQRLSQLLQTKQQPS--GSIGLMNTHLRLQQHYGQGLHITSKLHEGTAVSFVVLVKK 1009 >Q4MVQ6.1 Q4MVQ6_BACCE Sensor protein EC=2.7.13.3 Length = 1018 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1022 (37%), Positives = 580/1022 (56%), Gaps = 45/1022 (4%) Query: 23 RLVWTNYLTTTDYAKAPAAQDGVLDLRNFSFTGHQTLQLKGEWTFYPSVLLVSGAGSDNG 82 R +W + Y P A++G+++L + +F + L GEW FYP+VLL +N Sbjct: 21 RSIW---FKQSLYINQPHAEEGIVNLSDITFGEKNLVTLNGEWKFYPNVLLTPDQMKENN 77 Query: 83 NAPAAQAEKVFVPDLWDGYFPQDGSAFHYGTYRLQIRLDQETKQTFAMKISRIGNASSVY 142 E + VP W + YGTY L I++ + + + + +KI R+ N +Y Sbjct: 78 K----DYEYINVPGNWKERVDRTHQK-EYGTYALSIKV-KNSNENYGLKIQRVHNQFDLY 131 Query: 143 VNGQLLASSGHPSSDPGKHQAQNVPYTVTIPAGSP-TLDLVIEVS---HDAGKGGIERAI 198 VNG+L+ G H+ P + + A ++L+I V+ ++ GGI + Sbjct: 132 VNGELVQERGSIFKPNDVHKTSLTPTVIKVKANEQGVINLLIPVTKTTQESKHGGITGGV 191 Query: 199 RFGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLLS-SNKGLSYFAFFMIFTLFSV 257 RFG+ +AI Q + F++ +Y I+ ++ N + YF+ IF Sbjct: 192 RFGSENAIVQDSFNNLMMQIIATTIVFLHGIYAFIIFVMKPKNVEILYFSLGSIFAGIIF 251 Query: 258 LISDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPSRVP-KVTTHIIAFCWT 316 LI+D+R LF + + +KI+Y++++G F+ L + K I C Sbjct: 252 LITDERFLFSLYEFEFSTYMKIIYISFVGFALFILLYMKRFLRGYGDNKFILFTIVLC-G 310 Query: 317 LYALFILISPSSYIQAXXXXXXXXXXXXXXXXGHILRRAIQQ-KEDVIFLLLACIGIGIN 375 +Y +L S +Q I+ R ++ K D+IFLL I Sbjct: 311 IYVFVVLFSSPRLVQDFGFILFFTIIIPFILTAIIVLRVVESGKYDLIFLLFTVISATSG 370 Query: 376 ILWSAFMHLSPENEL--------IHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLAGKLQ 427 +L ++F + + YP D++ L GKL+ Sbjct: 371 VLCASFKEFAFMYSIGFARIFDADFYPFDIFLAMVSFSTFWFIRFFRTSDENSELVGKLK 430 Query: 428 LEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRMSFM 487 E +KD+FL NT+HELRNPL G+ + Q ++D++ ++ + ++ ++++ + RMS++ Sbjct: 431 EEHHKKDQFLANTAHELRNPLHGMMNIAQSVMDEEK-AINGESKQHLKLLMTIGRRMSYL 489 Query: 488 LDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAVQAD 547 L+DLID+TR++++ IP+ +PV LQ +++ V+DM K + + K +Q+ A+I + FP V AD Sbjct: 490 LNDLIDVTRMEQKGIPIHKRPVDLQPIITMVIDMQKFIGEEKKLQIIANIPERFPFVLAD 549 Query: 548 EQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFHPYEQ 607 + R+IQILFNLLHNAVKFTD+G IT+ ++ A +QV DTGIGI +EA +IF PYEQ Sbjct: 550 QNRLIQILFNLLHNAVKFTDEGAITIDVEKRKNYAAIQVTDTGIGIDKEAQKRIFLPYEQ 609 Query: 608 ADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEEDFQP 667 + + SGGFGLGLSIC+QLVE+HGGT+T S L + + F FTLPL + Sbjct: 610 GSDSYGE-SGGFGLGLSICKQLVEMHGGTLTVTSVLHKGSTFTFTLPLAEREEM------ 662 Query: 668 SSLTNLSVPLDEIAAAAE-PPVERGISPNESGAPACRLLIVDDDAVNLNVLAQMLETEGY 726 L V + I E VE + N G R+L VDDD +NL VL +L + Y Sbjct: 663 -----LIVSKETIEKVVELKQVE--MKDNRVGNRK-RILAVDDDPINLKVLKSILPQDEY 714 Query: 727 VIDAVTSAELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLLTARVR 786 ++ VT+ L E +D+++ DVMMP MSGYELT++IR +++I+ELPI+LLTAR + Sbjct: 715 ELETVTTGREVL-ERLNMEWDMILVDVMMPKMSGYELTKMIRTQYSIAELPIVLLTARSQ 773 Query: 787 TEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQPHFLF 846 EDI TGF AGANDY+ KP+DA ELK R++ALT+LK SI +R+RME AWLQ+QIQPHFLF Sbjct: 774 PEDIYTGFLAGANDYIVKPIDALELKVRINALTELKQSIHERIRMEGAWLQAQIQPHFLF 833 Query: 847 NTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVYIEKER 906 NTLN+IAALG ID +M+ L+ EF YLR SF + + VP++HEL L++SY+YIE+ER Sbjct: 834 NTLNTIAALGEIDIVRMEKLIVEFGTYLRASFGEEVLAETVPIQHELDLLQSYLYIERER 893 Query: 907 FGSRLTVVWNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEMVXXXX 966 FG R+ V +E GI+ ++PP SIQ LVENA++HG+L + +GG++ + + ++ + Sbjct: 894 FGKRIQSVLEVEDGIECVVPPFSIQTLVENAVRHGILKKAKGGSIHIKIESVSGFINISI 953 Query: 967 XXXXXXXXXXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGTCVSFQ 1026 + ++L + + + GIGL+N + RL Q +GTGL+I+S L +GT VSFQ Sbjct: 954 ADDGIGMSDEKIKEILV--KKPNQKQGIGLLNTDARLKQLYGTGLEIKSELGKGTIVSFQ 1011 Query: 1027 IP 1028 +P Sbjct: 1012 LP 1013 >C3ERU4.1 C3ERU4_BACTK Putative uncharacterized protein Length = 1018 Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1022 (37%), Positives = 579/1022 (56%), Gaps = 45/1022 (4%) Query: 23 RLVWTNYLTTTDYAKAPAAQDGVLDLRNFSFTGHQTLQLKGEWTFYPSVLLVSGAGSDNG 82 R +W + Y P A++G+++L + +F + L GEW FYP+VLL +N Sbjct: 21 RSIW---FKQSLYINQPHAEEGIVNLSDITFGEKNLVTLNGEWKFYPNVLLTPDQMKENN 77 Query: 83 NAPAAQAEKVFVPDLWDGYFPQDGSAFHYGTYRLQIRLDQETKQTFAMKISRIGNASSVY 142 E + VP W + YGTY L I++ + + + + +KI R+ N +Y Sbjct: 78 K----DYEYINVPGNWKERVDRTHQK-EYGTYALSIKV-KNSNENYGLKIQRVHNQFDLY 131 Query: 143 VNGQLLASSGHPSSDPGKHQAQNVPYTVTIPAGSP-TLDLVIEVS---HDAGKGGIERAI 198 VNG+L+ G H+ P + + A ++L+I V+ ++ GGI + Sbjct: 132 VNGELVQERGSIFKPNDVHKTSLTPTVIKVKANEQGVINLLIPVTKTTQESKHGGITGGV 191 Query: 199 RFGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLLS-SNKGLSYFAFFMIFTLFSV 257 RFG+ +AI Q + F++ +Y I+ ++ N + YF+ IF Sbjct: 192 RFGSENAIVQDSFNNLMMQIIATTIVFLHGIYAFIIFVMKPKNVEILYFSLGSIFAGIIF 251 Query: 258 LISDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPSRVP-KVTTHIIAFCWT 316 LI+D+R LF + + +KI+Y +++G F+ L + K I C Sbjct: 252 LITDERFLFSLYEFEFSTYMKIIYTSFVGFALFILLYMKRFLRGYGDNKFILFTIVLC-G 310 Query: 317 LYALFILISPSSYIQAXXXXXXXXXXXXXXXXGHILRRAIQQ-KEDVIFLLLACIGIGIN 375 +Y +L S +Q I+ R ++ K D+IFLL I Sbjct: 311 IYVFVVLFSSPRLVQDFGFILFFTIIIPFILTAIIVLRVVESGKYDLIFLLFTVISATSG 370 Query: 376 ILWSAFMHLSPENEL--------IHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLAGKLQ 427 +L ++F + + YP D++ L GKL+ Sbjct: 371 VLCASFKEFAFMYSIGFARIFDADFYPFDIFLAMVSFSTFWFIRFFRTSDENSELVGKLK 430 Query: 428 LEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRMSFM 487 E +KD+FL NT+HELRNPL G+ + Q ++D++ ++ + ++ ++++ + RMS++ Sbjct: 431 EEHHKKDQFLANTAHELRNPLHGMMNIAQSVMDEEK-AINGESKQHLKLLMTIGRRMSYL 489 Query: 488 LDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAVQAD 547 L+DLID+TR++++ IP+ +PV LQ +++ V+DM K + + K +Q+ A+I + FP V AD Sbjct: 490 LNDLIDVTRMEQKGIPIHKRPVDLQPIITMVIDMQKFIGEEKKLQIIANIPERFPFVLAD 549 Query: 548 EQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFHPYEQ 607 + R+IQILFNLLHNAVKFTD+G IT+ ++ A +QV DTGIGI +EA +IF PYEQ Sbjct: 550 QNRLIQILFNLLHNAVKFTDEGAITIDVEKRKNYAAIQVTDTGIGIDKEAQKRIFLPYEQ 609 Query: 608 ADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEEDFQP 667 + + SGGFGLGLSIC+QLVE+HGGT+T S L + + F FTLPL + Sbjct: 610 GSDSYGE-SGGFGLGLSICKQLVEMHGGTLTVTSVLHKGSTFTFTLPLAEREEM------ 662 Query: 668 SSLTNLSVPLDEIAAAAE-PPVERGISPNESGAPACRLLIVDDDAVNLNVLAQMLETEGY 726 L V + I E VE + N G R+L VDDD +NL VL +L + Y Sbjct: 663 -----LIVSKETIEKVVELKQVE--MKDNRVGNRR-RILAVDDDPINLKVLKSILPQDEY 714 Query: 727 VIDAVTSAELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLLTARVR 786 ++ VT+ L E +D+++ DVMMP MSGYELT++IR +++I+ELPI+LLTAR + Sbjct: 715 ELETVTTGREVL-ERLNMEWDMILVDVMMPKMSGYELTKMIRTQYSIAELPIVLLTARSQ 773 Query: 787 TEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQPHFLF 846 EDI TGF AGANDY+ KP+DA ELK R++ALT+LK SI +R+RME AWLQ+QIQPHFLF Sbjct: 774 PEDIYTGFLAGANDYIVKPIDALELKVRINALTELKQSIHERIRMEGAWLQAQIQPHFLF 833 Query: 847 NTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVYIEKER 906 NTLN+IAALG ID +M+ L+ EF YLR SF + + VP++HEL L++SY+YIE+ER Sbjct: 834 NTLNTIAALGEIDIVRMEKLIVEFGTYLRASFGEEVLAETVPIQHELDLLQSYLYIERER 893 Query: 907 FGSRLTVVWNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEMVXXXX 966 FG R+ V +E GI+ ++PP SIQ LVENA++HG+L + +GG++ + + ++ + Sbjct: 894 FGKRIQSVLEVEDGIECVVPPFSIQTLVENAVRHGILKKAKGGSIHIKIESVSGFINISI 953 Query: 967 XXXXXXXXXXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGTCVSFQ 1026 + ++L + + + GIGL+N + RL Q +GTGL+I+S L +GT VSFQ Sbjct: 954 ADDGIGMSDEKIKEILV--KKPNQKQGIGLLNTDARLKQLYGTGLEIKSELGKGTIVSFQ 1011 Query: 1027 IP 1028 +P Sbjct: 1012 LP 1013 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,525,644,863 Number of extensions: 221608544 Number of successful extensions: 737148 Number of sequences better than 1.0e-05: 52690 Number of HSP's gapped: 667678 Number of HSP's successfully gapped: 55137 Length of query: 1032 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 886 Effective length of database: 1,685,228,013 Effective search space: 1493112019518 Effective search space used: 1493112019518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 137 (57.4 bits)