BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0003.p (1416 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1HUA8.1 B1HUA8_LYSSC Cell surface glycoprotein 2 (S-layer prote... 410 e-112 B1DIS9.1 B1DIS9_9BACL S-layer domain protein 315 2e-83 B1D7B9.1 B1D7B9_9BACL S-layer domain protein 269 2e-69 B1DBB3.1 B1DBB3_9BACL S-layer domain protein 249 2e-63 Q06852.2 SLAP1_CLOTH Cell surface glycoprotein 1 182 2e-43 >B1HUA8.1 B1HUA8_LYSSC Cell surface glycoprotein 2 (S-layer protein 2) Length = 1549 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 207/427 (48%), Positives = 277/427 (64%), Gaps = 6/427 (1%) Query: 992 VPVQRTTRNDGTITDLVRFTXXXXXXXXXXXXXTGQSIARVVIPDAADKVGEVNVQIPVE 1051 + ++RT +G ITD V T +I R+V+PD D++ +V V++P + Sbjct: 1122 IEIERTKHANGEITDFVALTESSAKAAIEKAKQIDNNIVRIVLPDVNDEIDKVTVEVPKQ 1181 Query: 1052 TAKLLKENGIVLEMYTENAIIRIPNASLDGIAQDFYFRLVPVKSATERNEIEKRATLEAV 1111 + +LL+ENG+ LE+ TEN ++ IP++S+ GI +FYFRLVPVK +ER IE+RA +E V Sbjct: 1182 SLQLLRENGLSLEIATENGLVTIPHSSMKGIEDNFYFRLVPVKKNSERQAIEERARVERV 1241 Query: 1112 VREVAGNNKIEVVARPMTIETNLSSRAVTLILPLKDVKLPANEAERNAFLAQLGIFIEHT 1171 V E +N + VVARPMTIETN+ +R V + LPLK VK+P N ER AFL QL +FIEH+ Sbjct: 1242 VHEALESNNVHVVARPMTIETNMPNRPVHVTLPLKGVKIPVNIVERKAFLKQLAMFIEHS 1301 Query: 1172 DGQKEVVKGKAVTYKEGLLGLEFSVTKFSTFTIINFNNQA----AASHGAYIVGFPDGEF 1227 DG+K+VV + VT +G LGL F+V KFSTFTII N H AYI GF DG F Sbjct: 1302 DGEKKVVLPEVVTMVKGELGLRFTVEKFSTFTIIQVNRTKPPLEVNKHEAYINGFLDGTF 1361 Query: 1228 KPDEQVTRAQMALMIARNLGYDANAAVGSLP-FGDVAVRHYAARAIAFVNAQGIMKGDPN 1286 P++ VTR Q+A MIAR LGY + V + P F D+ +YAA IAF+ +GIM GD Sbjct: 1362 GPEKNVTRGQVATMIARILGY-TDGTVDTTPLFRDIPSDYYAAGPIAFIKERGIMNGDIY 1420 Query: 1287 GQFRAAAPITRAEMAAVAANYMKLAVSADGKSSFNDTAGHWAQSVIEANLTAGLFKGYPD 1346 G FRA+ ITRAEMA V AN+ +L + + +F DT GHWAQ +IEA TAG+ G D Sbjct: 1421 GNFRASDNITRAEMATVVANFKQLHIEENQNITFKDTKGHWAQWIIEAIRTAGIINGQSD 1480 Query: 1347 GSFKPNAYLTRAEAVVMVNQMFDRGPLYGADATKFPDVSGSHWAYRDIQEAVIDHKYRID 1406 GSF PN +TRA+A+VM+N+M +RGPL G + F DV +HWA+ +I+EA H Y ID Sbjct: 1481 GSFAPNEPVTRAQAIVMMNRMLERGPLQGVTSPSFQDVKETHWAFEEIEEAAKTHTYVID 1540 Query: 1407 GEQKEQL 1413 + E+L Sbjct: 1541 QDGNEKL 1547 >B1DIS9.1 B1DIS9_9BACL S-layer domain protein Length = 761 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 182/442 (41%), Positives = 266/442 (60%), Gaps = 20/442 (4%) Query: 965 PAPDKTKTEVIEVDVXXXXXXXXXXXKVPVQRTTRNDGTITDLVRFTXXXXXXXXXXXXX 1024 P P K E+I VDV K ++RTT++DGT +D V T Sbjct: 325 PVPPK---EIIAVDVKGSGSDAVAA-KAEIERTTKSDGTKSDKVVLTSAQAKTAIAAIAA 380 Query: 1025 TGQSIARVVIPDAADKVGEVNVQIPVETAKLLKENGIVLEMYTENAIIRIPNASLDGIAQ 1084 A ++IPDA D+V EVNV +P E LL + + L + T+N + +P++SL+G A Sbjct: 381 NKLGAANIMIPDAKDEVSEVNVTVPKEAKGLLADAKLGLGIVTDNVQLIVPSSSLEGFAD 440 Query: 1085 DFYFRLVPVKSATERNEIEKRATLEAVVREVAGNNKIEVVARPMTIETNLSSRAVTLILP 1144 D +FR VP+K E+ EI+ RA + +V+ +A + + V+ RPMTIETNL +R VTLI+P Sbjct: 441 DVHFRFVPIKKDEEKKEIKARADKDTIVQAIASDG-VTVIGRPMTIETNLQNREVTLIMP 499 Query: 1145 LKDVKLPANEAERNAFLAQLGIFIEHTDGQKEVVKGKAVTY--KEGLLGLEFSVTKFSTF 1202 LK++ L +E L L ++IEH DG +E+++GK V Y +G+ G++F+VTKFSTF Sbjct: 500 LKEMPLSKDE------LEGLRVYIEHGDGTRELLQGKLVPYPGADGVQGIQFTVTKFSTF 553 Query: 1203 TIINFNNQAAASHGAYIVGFPDGEFKPDEQVTRAQMALMIARNLGYDANAAVGSLPFGDV 1262 T++ + H AY+ G+ DG+F+P++ +TRA+MA M++R + D N + + DV Sbjct: 554 TLV-YAKPKLEEHHAYVNGYQDGKFRPEQTITRAEMAAMLSRVITKDVNEDAAT--YADV 610 Query: 1263 AVRHYAARAIAFVNAQGIMKGDPNGQFRAAAPITRAEMAAVAANYMKLAVSADGKSSFND 1322 H+AA AIA V+A +M G PN +F PITRAE+AA+AA +S G F D Sbjct: 611 PTSHWAAPAIAKVSAMQVMSGYPNNRFGPEKPITRAELAAIAAGLDAEGISGSG---FKD 667 Query: 1323 TAGHWAQSVIEANLTAGLFKGYPDGSFKPNAYLTRAEAVVMVNQMFDRGPLYGADA-TKF 1381 AGHWA++ I AGL +GYPDGSFKP +TRAEAV ++N++ RGP D + + Sbjct: 668 IAGHWAENSIRKAQGAGLLQGYPDGSFKPEKTVTRAEAVTVLNRVLGRGPAAATDKESPW 727 Query: 1382 PDVSGSHWAYRDIQEAVIDHKY 1403 DV+ +WAY DI EA ++H + Sbjct: 728 RDVAVDYWAYADIAEASVEHSF 749 >B1D7B9.1 B1D7B9_9BACL S-layer domain protein Length = 2909 Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 150/401 (37%), Positives = 228/401 (56%), Gaps = 20/401 (4%) Query: 1027 QSIARVVIPDA-ADKVGEVNVQIPVETAKLLKENGIVLEMYTENAIIRIPNASLDGI--A 1083 Q R+++ D D EV V++ V + K L ++ I + + TENA + + +L + + Sbjct: 2518 QGTIRIIVDDIPGDPADEVKVKLTVNSIKYLLDSSIQVVIQTENATLHLSTEALGAMKGS 2577 Query: 1084 QDFYFRLVPVKSATERNEIEKRATLEAVVREVAGNNKIEVVARPMTIETNLSSRAVTLIL 1143 Q+F+F ++P++ E++ ++ R +R++A + K+ V+ PMTIETNL AV + Sbjct: 2578 QEFFFDILPIRKKDEQDAVKDRTVNAEAIRKIANSGKVTVIGMPMTIETNLPKVAVQVTF 2637 Query: 1144 PLKDVKLPANEAERNAFLAQLGIFIEHTDGQKEVVKGKAVTYKEGL-LGLEFSVTKFSTF 1202 PL +P++ +R FLA LG++IEH+DG+K +GK V +G +G+E V KFSTF Sbjct: 2638 PLDSNVIPSDLNQRKLFLASLGVYIEHSDGEKVFQRGKIVYNDKGYPVGIEIEVNKFSTF 2697 Query: 1203 TIINFNNQAAASHGAYIVGFPDGEFKPDEQVTRAQMALMIARNLGYDANAAVGSLP---- 1258 TI++ A+ H AY+ G+ DG F+P++ VTRA+M+ M+ R L G+LP Sbjct: 2698 TIVSAEG-ASVHHNAYMTGYSDGTFRPNQSVTRAEMSTMLYRLLS-------GTLPGRGS 2749 Query: 1259 ---FGDVAVRHYAARAIAFVNAQGIMKGDPNGQFRAAAPITRAEMAAVAANYMKLAVSAD 1315 F DV+ +A+ AI + GI+ G P+ F+ A ITRAEMAA+ +++L A Sbjct: 2750 VTAFKDVSGSFWASEAIRWGQQVGILNGYPDHTFKPNATITRAEMAAIIVKWLQLDPDA- 2808 Query: 1316 GKSSFNDTAGHWAQSVIEANLTAGLFKGYPDGSFKPNAYLTRAEAVVMVNQMFDRGPLYG 1375 +F D GHWA I A G GY DG+F+P+ LTRAEAVV+VN++ RGPL G Sbjct: 2809 ANPAFRDAKGHWASVQIAAAAKLGYMTGYSDGTFRPDQPLTRAEAVVIVNRILGRGPLTG 2868 Query: 1376 ADATKFPDVSGSHWAYRDIQEAVIDHKYRIDGEQKEQLVSE 1416 + DVS S WA+ I+EA H D E + E Sbjct: 2869 VTTPTWKDVSASFWAFGAIEEASRSHDAARDSGGSETFIPE 2909 >B1DBB3.1 B1DBB3_9BACL S-layer domain protein Length = 1542 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/411 (36%), Positives = 224/411 (54%), Gaps = 23/411 (5%) Query: 994 VQRTTRNDGTITDLVRFTXXXXXXXXXXXXXTGQSIARVVIPDAADKVGEVNVQIPVETA 1053 V RTT+ DGT+ D + +G S ++V+PD+ + E V++ E Sbjct: 1148 VVRTTQPDGTVRDELTLAATEAKALIDARKASGASSLKLVVPDSKGEAAETGVKLDAEAV 1207 Query: 1054 KLLKENGIVLEMYTENAIIRIPNASLDGIAQDFYFRLVPVKSATERNEIEKRATLEAVVR 1113 KLL +G+ L++ A I +PNA L + + +F + PV + ++E+RA L VV Sbjct: 1208 KLLAASGLDLDIDVSGAKIHVPNAVLKNVNTEVHFVISPVNE--RKAQLERRANLSTVVS 1265 Query: 1114 EVAGNNKIEVVARPMTIETNLSSRAVTLILPLKDVKLPANEAERNAFLAQLGIFIEHTDG 1173 ++KI ++ P I+TNL TL+LPL PA + A L+ +G++IEH+DG Sbjct: 1266 AAVKDSKITLIGIPADIDTNLPEGETTLVLPL-----PAGDWNSEA-LSHIGVYIEHSDG 1319 Query: 1174 QKEVVKGKAVTYKEGLLGLEFSVTKFSTFTIINFNNQAAASHGAYIVGFPDGEFKPDEQV 1233 E +G V +G G++F +KFSTF ++ + ++ AY+ GF FKP++ + Sbjct: 1320 TVEYKQGSVVDM-DGGKGIQFKNSKFSTFALVKLGEASESAPAAYMNGFEGNLFKPEKAI 1378 Query: 1234 TRAQMALMIARNLGYDANAAVGSLPFGDVAVRHYAARAIAFVNAQGIMKGDPNGQFRAAA 1293 TRA+MA +++R + DA A S + DV ++AA AI A G+MKG +G FR Sbjct: 1379 TRAEMATILSR-IAQDATAGEDSRVYSDVKQGYWAADAIRKATAAGLMKGYADGTFRPEK 1437 Query: 1294 PITRAEMAAVAANYMKLAVSADGKSS-----FNDTAGHWAQSVIEANLTAGLFKGYPDGS 1348 ITRAEMA +LAV G S F DT GHWA+ ++A AG KGY DG Sbjct: 1438 AITRAEMA-------QLAVRLAGGGSKLGAGFADTTGHWAEQAVKAAEGAGYIKGYADGM 1490 Query: 1349 FKPNAYLTRAEAVVMVNQMFDRGPLYGADATKFPDVSGSHWAYRDIQEAVI 1399 F+P+ L+RAEAVV++N+ P G A+ + DV SHWAY DI+ A I Sbjct: 1491 FRPDRTLSRAEAVVVINRSLGINPSSGG-ASSWKDVPASHWAYGDIEAASI 1540 >Q06852.2 SLAP1_CLOTH Cell surface glycoprotein 1 Length = 2313 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 128/211 (60%), Gaps = 13/211 (6%) Query: 1215 HGAYIVGFPDGEFKPDEQVTRAQMALMIARNLGYDAN-AAVGSLPFGDVAVRHYAARAIA 1273 H AY+ G+PDG F+P+ +TRA+ A++ A+ LG D + A + P+ D+A H+AA AI Sbjct: 2100 HRAYLRGYPDGSFRPERNITRAEAAVIFAKLLGADESYGAQSASPYSDLADTHWAAWAIK 2159 Query: 1274 FVNAQGIMKGDPNGQFRAAAPITRAEMAAVAANYM----------KLAVSADGKSSFNDT 1323 F +QG+ KG P+G F+ ITRAE A V +++ KLA F+D Sbjct: 2160 FATSQGLFKGYPDGTFKPDQNITRAEFATVVLHFLTKVKGQEIMSKLATIDISNPKFDDC 2219 Query: 1324 AGHWAQSVIEANLTAGLFKGYPDGSFKPNAYLTRAEAVVMVNQMFDRGPLYGADATKFPD 1383 GHWAQ IE + G GYPDG+FKP Y+ R+E+V ++N+ +RGPL GA FPD Sbjct: 2220 VGHWAQEFIEKLTSLGYISGYPDGTFKPQNYIKRSESVALINRALERGPLNGA-PKLFPD 2278 Query: 1384 VSGSHWAYRDIQEAVIDHKYRIDGEQKEQLV 1414 V+ S+WA+ DI + +DH Y I+ E KE+ V Sbjct: 2279 VNESYWAFGDIMDGALDHSYIIEDE-KEKFV 2308 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 8,409,258,501 Number of extensions: 374819196 Number of successful extensions: 683112 Number of sequences better than 1.0e-05: 1345 Number of HSP's gapped: 679991 Number of HSP's successfully gapped: 2087 Length of query: 1416 Length of database: 3,060,696,203 Length adjustment: 149 Effective length of query: 1267 Effective length of database: 1,656,964,968 Effective search space: 2099374614456 Effective search space used: 2099374614456 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 138 (57.8 bits)