BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0002.p (224 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E2G6.1 B9E2G6_CLOK1 Putative uncharacterized protein 142 2e-32 A5N928.1 A5N928_CLOK5 Putative uncharacterized protein 142 2e-32 B3K8C1.1 B3K8C1_9BACI Putative uncharacterized protein 128 3e-28 C1TDP1.1 C1TDP1_9FIRM Putative uncharacterized protein 84 1e-14 A7AZ65.1 A7AZ65_RUMGN Putative uncharacterized protein 84 1e-14 >B9E2G6.1 B9E2G6_CLOK1 Putative uncharacterized protein Length = 225 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 22/227 (9%) Query: 1 MTRISCDVVQDILPLYHDDICSAATRELVEEHLAECEDCRSYLEQIKSSFNLSVQAMEQN 60 M ISC V++D+LPLYHD +CS ++++VEEHL CEDC+ L+ I + ++ + + Sbjct: 1 MNNISCKVIKDLLPLYHDKVCSDDSKKIVEEHLTFCEDCQRELKNIDTEIKIAFKNNTMD 60 Query: 61 QLEVNGLQRFKRMWSRAQSAAFVKGLIVT----ASVAGILFLGYWGLFRWNVIPVASDDI 116 + + N ++ ++W +++ +F+KGLI A AGI Y GLFRWN+I V++D I Sbjct: 61 RKDTNVIKNISKLWKKSKVKSFIKGLIYATLFFAFAAGI----YIGLFRWNIINVSTDVI 116 Query: 117 SISNIRLRPNGEIAFRIQIKDGYGADRVIFNLHDDGGYYITPVHPVIRLNKSPNFNFVSG 176 I+++ +G IA+ +++ DGY ++ FN G +Y+ PV VI+ + + Sbjct: 117 KITDVCRLSDGRIAYHVKLIDGYILNQCNFNTDKKGNFYVKPVRSVIKQKQKKDTLAGLA 176 Query: 177 ELFT--NPDNVRAYEKKKHGKDVEITSIYYGPPNNPILIWKKGDKLP 221 +++ NP K+K K ++Y+G + ILIWK+ LP Sbjct: 177 DMYYDFNP-------KEKQSK-----ALYWGTYKDNILIWKEDMPLP 211 >A5N928.1 A5N928_CLOK5 Putative uncharacterized protein Length = 225 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 129/227 (56%), Gaps = 22/227 (9%) Query: 1 MTRISCDVVQDILPLYHDDICSAATRELVEEHLAECEDCRSYLEQIKSSFNLSVQAMEQN 60 M ISC V++D+LPLYHD +CS ++++VEEHL CEDC+ L+ I + ++ + + Sbjct: 1 MNNISCKVIKDLLPLYHDKVCSDDSKKIVEEHLTFCEDCQRELKNIDTEIKIAFKNNTMD 60 Query: 61 QLEVNGLQRFKRMWSRAQSAAFVKGLIVT----ASVAGILFLGYWGLFRWNVIPVASDDI 116 + + N ++ ++W +++ +F+KGLI A AGI Y GLFRWN+I V++D I Sbjct: 61 RKDTNVIKNISKLWKKSKVKSFIKGLIYATLFFAFAAGI----YIGLFRWNIINVSTDVI 116 Query: 117 SISNIRLRPNGEIAFRIQIKDGYGADRVIFNLHDDGGYYITPVHPVIRLNKSPNFNFVSG 176 I+++ +G IA+ +++ DGY ++ FN G +Y+ PV VI+ + + Sbjct: 117 KITDVCRLSDGRIAYHVKLIDGYILNQCNFNTDKKGNFYVKPVRSVIKQKQKKDTLAGLA 176 Query: 177 ELFT--NPDNVRAYEKKKHGKDVEITSIYYGPPNNPILIWKKGDKLP 221 +++ NP K+K K ++Y+G + ILIWK+ LP Sbjct: 177 DMYYDFNP-------KEKQSK-----ALYWGTYKDNILIWKEDMPLP 211 >B3K8C1.1 B3K8C1_9BACI Putative uncharacterized protein Length = 189 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 60/176 (34%), Positives = 104/176 (59%), Gaps = 1/176 (0%) Query: 46 IKSSFNLSVQAMEQNQLEVNGLQRFKRMWSRAQSAAFVKGLIVTASVAGILFLGYWGLFR 105 + S +L Q MEQN+ E GL++ WSR + +F KGL+++ G+LFL Y GLF Sbjct: 1 MSSPMSLPTQTMEQNKDEGAGLRQVAAQWSRTKWISFTKGLLISCLAVGLLFLAYAGLFE 60 Query: 106 WNVIPVASDDISISNIRLRPNGEIAFRIQIKDGYGADRVIFNLHDDGGYYITPVHPVIRL 165 WN+ V + + +S+I +G IA+ +++ DGY ++ ++ ++G +Y+TP P+I+ Sbjct: 61 WNITSVPTRVMQVSDISQLKDGRIAYHVKMTDGYNVNQASYDTDEEGNFYVTPKRPIIKS 120 Query: 166 NKSPNFNFVSGELFTNPDNVRAYEKKKHGKDVEITSIYYGPPNNPILIWKKGDKLP 221 K + +S +TN R +K G V+I ++Y G P++ +LIW++G +LP Sbjct: 121 KKFADMG-LSNMYYTNDIEERNAYEKSFGDGVQIKALYLGTPDDRVLIWEQGMELP 175 >C1TDP1.1 C1TDP1_9FIRM Putative uncharacterized protein Length = 110 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 66/108 (61%), Gaps = 2/108 (1%) Query: 3 RISCDVVQDILPLYHDDICSAATRELVEEHLAECEDCRSYLEQIKSSFNLSVQAMEQNQL 62 +ISC++V+D+LPLYHD +CS ++ +VEEHLA C+ C++ L + ++ LS+ EQN Sbjct: 2 KISCEIVKDLLPLYHDGVCSNDSKTMVEEHLAYCDRCKAELLVMNNA--LSINKAEQNLH 59 Query: 63 EVNGLQRFKRMWSRAQSAAFVKGLIVTASVAGILFLGYWGLFRWNVIP 110 E +++ + W + + +KG+++T ++ L + + +IP Sbjct: 60 EAEAVKKLSKRWKKGMLKSLLKGILITILAIALIALVLYCFMDFRIIP 107 >A7AZ65.1 A7AZ65_RUMGN Putative uncharacterized protein Length = 216 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 65/96 (67%), Gaps = 2/96 (2%) Query: 1 MTRISCDVVQDILPLYHDDICSAATRELVEEHLAECEDCRSYLEQIKSSFNLSVQAMEQN 60 M++ISC+V+QDI+PLY D+I S T++LVEEHL ECEDCR +E++++ L + N Sbjct: 1 MSKISCNVIQDIMPLYVDEIVSEDTKKLVEEHLKECEDCRKEMEKMRAKIILP-NKKKIN 59 Query: 61 QLEVNGLQRFK-RMWSRAQSAAFVKGLIVTASVAGI 95 Q E Q+ K R+ +R +AA + ++V A +AG+ Sbjct: 60 QAEKELFQKLKHRLINRRIAAAILGAILVCALLAGV 95 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,423,276,953 Number of extensions: 58971894 Number of successful extensions: 148114 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 148106 Number of HSP's successfully gapped: 34 Length of query: 224 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 93 Effective length of database: 1,826,543,238 Effective search space: 169868521134 Effective search space used: 169868521134 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)