BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0041.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3BIM1.1 C3BIM1_9BACI Permease                                         96   1e-18
C3B1V6.1 C3B1V6_BACMY Permease                                         96   1e-18
C3AK03.1 C3AK03_BACMY Permease                                         96   2e-18
C3EJ13.1 C3EJ13_BACTK Permease                                         81   3e-14
Q81SC9.1 Q81SC9_BACAN Permease, putative                               80   5e-14

>C3BIM1.1 C3BIM1_9BACI Permease
          Length = 422

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 2   ALPMLFTFSTTSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASG 61
           A P+L T   T ++ + +I M + G+T ++IN+P+QVY+Q+T + +Y GRVF ++ET S 
Sbjct: 312 AFPLLVTIPGTVSFIYYIIFMLIFGMTSISINVPLQVYVQKTTDSQYLGRVFGLIETIST 371

Query: 62  AIAPAGMILYGMLLDRVPSGFLLLASGVAIVLVALLGRRGLKNGRALEV 110
           AI P G+ILYG LLD +P+  +++ S + + +V LLG + +   + ++V
Sbjct: 372 AITPLGIILYGFLLDIMPTSMVMVISAIGVWMVVLLGMKQMDVKKQVDV 420


>C3B1V6.1 C3B1V6_BACMY Permease
          Length = 400

 Score = 95.5 bits (236), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 2   ALPMLFTFSTTSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASG 61
           A P+L T   T ++ + +I M + G+T ++IN+P+QVY+Q+T + +Y GRVF ++ET S 
Sbjct: 290 AFPLLVTIPGTVSFIYYIIFMLIFGMTSISINVPLQVYVQKTTDSQYLGRVFGLIETIST 349

Query: 62  AIAPAGMILYGMLLDRVPSGFLLLASGVAIVLVALLGRRGLKNGRALEV 110
           AI P G+ILYG LLD +P+  +++ S + + +V LLG + +   + ++V
Sbjct: 350 AITPLGIILYGFLLDIMPTSMVMVISAIGVWMVVLLGMKQMDVKKQVDV 398


>C3AK03.1 C3AK03_BACMY Permease
          Length = 400

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 74/109 (67%)

Query: 2   ALPMLFTFSTTSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASG 61
           A P+L T   T ++ + +I M + G+T ++IN+P+QVY+Q+T + +Y GRVF ++ET S 
Sbjct: 290 AFPLLVTIPGTVSFIYYIIFMLIFGMTSISINVPLQVYVQKTTDSQYLGRVFGLIETIST 349

Query: 62  AIAPAGMILYGMLLDRVPSGFLLLASGVAIVLVALLGRRGLKNGRALEV 110
           AI P G+ILYG LLD +P+  +++ S + + +V LLG + +   + ++V
Sbjct: 350 AITPLGIILYGFLLDIMPTSMVMVISAIGVWMVVLLGMKQMDVKKQVDV 398


>C3EJ13.1 C3EJ13_BACTK Permease
          Length = 422

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 59/82 (71%)

Query: 4   PMLFTFSTTSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASGAI 63
           P++ T    +++ + +  M L G+++M +NIP+QV+LQ+T +  Y GRVF ++ET S AI
Sbjct: 314 PLVVTIPKVASFIYYIAFMMLTGISMMVVNIPMQVHLQKTTDPSYLGRVFGLLETISTAI 373

Query: 64  APAGMILYGMLLDRVPSGFLLL 85
           AP GMI+YG+LLD +P+  +++
Sbjct: 374 APLGMIVYGLLLDMLPTSIVMM 395


>Q81SC9.1 Q81SC9_BACAN Permease, putative
          Length = 422

 Score = 80.1 bits (196), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/82 (41%), Positives = 58/82 (70%)

Query: 4   PMLFTFSTTSAYFFLLILMFLVGVTVMNINIPIQVYLQQTVEEEYRGRVFAVVETASGAI 63
           P+L T    +++ + +  M L G+ +M +NIP+QV++Q+T +  Y GRVF ++ET + AI
Sbjct: 314 PLLVTIPKVASFIYYIAFMMLTGIAIMIVNIPMQVHMQKTTDPSYLGRVFGLLETIATAI 373

Query: 64  APAGMILYGMLLDRVPSGFLLL 85
           AP GMI+YG+LLD +P+  +++
Sbjct: 374 APLGMIVYGLLLDMLPTSIVMM 395


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.143    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 660,341,661
Number of extensions: 24435845
Number of successful extensions: 114939
Number of sequences better than 1.0e-05: 226
Number of HSP's gapped: 114999
Number of HSP's successfully gapped: 226
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)