BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0039.p (402 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3B1V5.1 C3B1V5_BACMY Transcriptional regulator, Xre 246 3e-63 C3AK02.1 C3AK02_BACMY Transcriptional regulator, Xre 246 3e-63 C2W6F5.1 C2W6F5_BACCE Transcriptional regulator, Xre 243 2e-62 C3BIM0.1 C3BIM0_9BACI Transcriptional regulator, Xre 233 3e-59 C2V9Z4.1 C2V9Z4_BACCE Transcriptional regulator, Xre 226 3e-57 >C3B1V5.1 C3B1V5_BACMY Transcriptional regulator, Xre Length = 404 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 230/396 (58%), Gaps = 7/396 (1%) Query: 6 TIGDKIKYLRTSKRLTQSDLAGEDMTKSMLSQIENGKALPSMRSLQILAARLGVDAGYFL 65 T+G+KIK LR KRLTQ++LAG ++TKSMLSQIENGKA PSM++LQ LA++L +A + L Sbjct: 3 TLGEKIKALRKEKRLTQTELAGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 66 EEEQNAELTRLVRDIEAKFKHKNYQAIVSGVKPLMDGRLPMTVDAARLMGFYVNACYHTG 125 EE+ N E+ +L+ +E KHK ++ + + P++ LP T++ ARL +++A +H Sbjct: 63 EED-NEEVAKLLPKMEQAIKHKKFEEVYHTLLPIVQKELPSTLNTARLYKQFISAAFHLK 121 Query: 126 TEGGEEAIRRAVEIYERFNLYVESAKVQYLAYALLFTQSRYSESLELILRVREDYVSKKT 185 I +AV I++++ LY ES + + +LFT+ +Y E L+L+ ++++Y +K+ Sbjct: 122 DYNIHSYIEKAVAIFQKYALYRESTQTNLMLCHVLFTRKKYEECLDLLASIQKEYETKQL 181 Query: 186 GNDFLFEIDLHYAESVTLSALGQYDGXXXXXXXXXXXXXEEGVYYLTDHLYRVLSKLALM 245 D + +I+L E++ L A G Y+ + VYY TD LYR+LS ++ Sbjct: 182 EMDLIIQIELFLCEAIVLLAYGNYEDCEKVSLQALEFSKKHQVYYKTDELYRILSYQKVL 241 Query: 246 SGNLDEAGMYLDKAKLFVQVTEDEQSVQLVHLAEIRLANA-ERRYEEAI----MLGQKYQ 300 + D+ Y++K++ F TED S+ + + + N Y A+ + QK Q Sbjct: 242 VADKDKYLHYINKSEQFAIFTEDTISIANIDILKAYYYNTIMDEYPSALHFLKLFRQKLQ 301 Query: 301 SKGTRYESGC-CLQTGIALYHLGRDEEALAALSKVILPDDAYHPLDRAAVFTSYAYKAKI 359 ++ T ESG ++ G ALY L + EEAL L + +PD HPLD+A V T AY+A Sbjct: 302 NEPTFIESGLYYVEKGKALYGLKQYEEALETLKQATIPDYMLHPLDQAWVITGGAYRALC 361 Query: 360 YARQGKMEEARQQSEIAYERVREYPPSVYTWFIEAT 395 Y ++A Q++ A+ ++E+P S +T FI+ T Sbjct: 362 YMELKNKQKALQEATEAFHAIQEFPDSTFTAFIKET 397 >C3AK02.1 C3AK02_BACMY Transcriptional regulator, Xre Length = 404 Score = 246 bits (628), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 230/396 (58%), Gaps = 7/396 (1%) Query: 6 TIGDKIKYLRTSKRLTQSDLAGEDMTKSMLSQIENGKALPSMRSLQILAARLGVDAGYFL 65 T+G+KIK LR KRLTQ++LAG ++TKSMLSQIENGKA PSM++LQ LA++L +A + L Sbjct: 3 TLGEKIKALRKEKRLTQTELAGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 66 EEEQNAELTRLVRDIEAKFKHKNYQAIVSGVKPLMDGRLPMTVDAARLMGFYVNACYHTG 125 EE+ N E+ +L+ +E KHK ++ + + P++ LP T++ ARL +++A +H Sbjct: 63 EED-NEEVAKLLPKMEQAIKHKKFEEVYHTLLPIVQKELPSTLNTARLYKQFISAAFHLK 121 Query: 126 TEGGEEAIRRAVEIYERFNLYVESAKVQYLAYALLFTQSRYSESLELILRVREDYVSKKT 185 I +AV I++++ LY ES + + +LFT+ +Y E L+L+ ++++Y +K+ Sbjct: 122 DYNIHSYIEKAVAIFQKYALYRESTQTNLMLCHVLFTRKKYEECLDLLASIQKEYETKQL 181 Query: 186 GNDFLFEIDLHYAESVTLSALGQYDGXXXXXXXXXXXXXEEGVYYLTDHLYRVLSKLALM 245 D + +I+L E++ L A G Y+ + VYY TD LYR+LS ++ Sbjct: 182 EMDLIIQIELFLCEAIVLLAYGNYEDCEKVSLQALEFSKKHQVYYKTDELYRILSYQKVL 241 Query: 246 SGNLDEAGMYLDKAKLFVQVTEDEQSVQLVHLAEIRLANA-ERRYEEAI----MLGQKYQ 300 + D+ Y++K++ F TED S+ + + + N Y A+ + QK Q Sbjct: 242 VADKDKYLHYINKSEQFAIFTEDTISIANIDILKAYYYNTIMDEYPSALHYLKLFRQKLQ 301 Query: 301 SKGTRYESGC-CLQTGIALYHLGRDEEALAALSKVILPDDAYHPLDRAAVFTSYAYKAKI 359 ++ T ESG ++ G ALY L + EEAL L + +PD HPLD+A V T AY+A Sbjct: 302 NEPTFIESGLYYVEKGKALYGLKQYEEALETLKQATIPDYMLHPLDQAWVITGGAYRALC 361 Query: 360 YARQGKMEEARQQSEIAYERVREYPPSVYTWFIEAT 395 Y ++A Q++ A+ ++E+P S +T FI+ T Sbjct: 362 YMELKNKQKALQEATEAFHAIQEFPDSTFTAFIKET 397 >C2W6F5.1 C2W6F5_BACCE Transcriptional regulator, Xre Length = 404 Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 142/396 (35%), Positives = 224/396 (56%), Gaps = 7/396 (1%) Query: 6 TIGDKIKYLRTSKRLTQSDLAGEDMTKSMLSQIENGKALPSMRSLQILAARLGVDAGYFL 65 T+G+KIK LR KRLTQ++LAG ++TKSMLSQIENGKA PSM++LQ LA++L +A + L Sbjct: 3 TLGEKIKALRKEKRLTQTELAGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 66 EEEQNAELTRLVRDIEAKFKHKNYQAIVSGVKPLMDGRLPMTVDAARLMGFYVNACYHTG 125 EE+ N E+T+L+ +E K+ ++ + + P++ LP T+ ARL +++ +H Sbjct: 63 EED-NEEVTKLIPKMEQAIKNNQFEEVYHTLLPIVQKELPPTLSTARLYKQFISVAFHMK 121 Query: 126 TEGGEEAIRRAVEIYERFNLYVESAKVQYLAYALLFTQSRYSESLELILRVREDYVSKKT 185 I +AVE ++++ LY ES + LLF Q +Y E L+L+ +R++Y K+ Sbjct: 122 DYNIHSYIEKAVETFQKYTLYRESTQTSLKLCYLLFVQKKYEECLQLLTSIRKEYEEKQL 181 Query: 186 GNDFLFEIDLHYAESVTLSALGQYDGXXXXXXXXXXXXXEEGVYYLTDHLYRVLSKLALM 245 D + +I+L E+V L A G Y+G E VYY TD YR+LS ++ Sbjct: 182 EMDLIIQIELFLCEAVVLLAYGNYEGCEKIILQALDFSKENQVYYKTDEFYRILSYQNVL 241 Query: 246 SGNLDEAGMYLDKAKLFVQVTEDEQSVQLVHLAEIRLANA-ERRYEEAI----MLGQKYQ 300 + + Y+ K++ F TE+ S+ +V + + N Y A+ M +K Q Sbjct: 242 VADKKKYLHYIKKSEQFAIFTENTLSLAIVDILKAYYYNTITNEYTLALQHLEMFRKKLQ 301 Query: 301 SKGTRYESGC-CLQTGIALYHLGRDEEALAALSKVILPDDAYHPLDRAAVFTSYAYKAKI 359 + E G ++ G +LY L R EEAL AL + +PD +HPLD+A + TS AY+A Sbjct: 302 DEHLFREDGAYYVEKGKSLYGLKRYEEALKALERATIPDYMFHPLDQAWIITSGAYRALC 361 Query: 360 YARQGKMEEARQQSEIAYERVREYPPSVYTWFIEAT 395 Y ++A Q++ A+ ++E+P S +T FI+ T Sbjct: 362 YMELQNKQKALQEATEAFHAIQEFPDSTFTVFIKET 397 >C3BIM0.1 C3BIM0_9BACI Transcriptional regulator, Xre Length = 404 Score = 233 bits (593), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 220/396 (55%), Gaps = 7/396 (1%) Query: 6 TIGDKIKYLRTSKRLTQSDLAGEDMTKSMLSQIENGKALPSMRSLQILAARLGVDAGYFL 65 T+G+KIK LR KRLTQ+ LAG ++TKSMLSQIENGKA PSM++LQ LA++L +A + L Sbjct: 3 TLGEKIKALRKEKRLTQTQLAGSELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLL 62 Query: 66 EEEQNAELTRLVRDIEAKFKHKNYQAIVSGVKPLMDGRLPMTVDAARLMGFYVNACYHTG 125 EE+ N E+T+L+ +E K+ ++ + P++ LP T+ ARL +++ ++ Sbjct: 63 EED-NEEVTKLIPKMEQAIKNNQFEEAYRTLLPIVQKELPPTLSTARLYKQFISVAFNMK 121 Query: 126 TEGGEEAIRRAVEIYERFNLYVESAKVQYLAYALLFTQSRYSESLELILRVREDYVSKKT 185 I +AVEI++++ LY ES + +LF +Y E LEL+ +R++Y +K+ Sbjct: 122 DYSIHSYIEKAVEIFQKYTLYRESTQTSLKLCYVLFVHKKYKECLELLTSIRKEYEAKQL 181 Query: 186 GNDFLFEIDLHYAESVTLSALGQYDGXXXXXXXXXXXXXEEGVYYLTDHLYRVLSKLALM 245 D + +I+L E++ L A G YDG E VYY TD YR+LS ++ Sbjct: 182 EMDLIIQIELFLCEAIVLLAYGDYDGCEKIILQALDFSKENQVYYKTDEFYRILSYQNVI 241 Query: 246 SGNLDEAGMYLDKAKLFVQVTEDEQSVQLVHLAEIRLANA-ERRYEEAI----MLGQKYQ 300 + ++ Y+ K++ F TE+ S+ ++ + + N Y A+ + K Q Sbjct: 242 VADENKYLHYIKKSEQFAVFTENILSIAIIDILKAYYYNTITNEYTLALKHLDLFRTKLQ 301 Query: 301 SKGTRYESGC-CLQTGIALYHLGRDEEALAALSKVILPDDAYHPLDRAAVFTSYAYKAKI 359 K E G L+ G ALY L R E AL L + +PD +HPLD+A + T AY+A Sbjct: 302 DKPLFQEDGVYYLEKGKALYGLKRYEAALETLQQATIPDYMFHPLDQAWIITGGAYRALC 361 Query: 360 YARQGKMEEARQQSEIAYERVREYPPSVYTWFIEAT 395 Y ++A +++ A+ ++E+P S +T FI+ T Sbjct: 362 YMELKNKKKALREATEAFHAIQEFPDSTFTVFIKET 397 >C2V9Z4.1 C2V9Z4_BACCE Transcriptional regulator, Xre Length = 405 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 138/402 (34%), Positives = 219/402 (54%), Gaps = 19/402 (4%) Query: 6 TIGDKIKYLRTSKRLTQSDLAGEDMTKSMLSQIENGKALPSMRSLQILAARLGVDAGYFL 65 T+G KIK LR K+LTQ+DLAG ++TKSMLSQIENGKA PSM++LQ +A +LG + + L Sbjct: 4 TLGAKIKTLRKEKKLTQTDLAGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 66 EEEQNAELTRLVRDIEAKFKHKNYQAIVSGVKPLMDGRLPMTVDAARLMGFYVNACYHTG 125 E++ + E+ L++ +E K Y + + P++ LP T++ ARL +V A Sbjct: 64 EDD-DVEMIELIQQMEQLIKANKYDEVYEILLPIVQKELPPTLNTARLYKQFVTAAAKMK 122 Query: 126 TEGGEEAIRRAVEIYERFNLYVESAKVQYLAYALLFTQSRYSESLELILRVREDYVSKKT 185 E + +A I+E++ LY ES + + +FT+ +Y+E L+LI +R DY K Sbjct: 123 DYNIEHYVEKATSIFEKYTLYRESTETKLKLSFTIFTRKKYAECLQLIASIRNDYEEKHL 182 Query: 186 GNDFLFEIDLHYAESVTLSALGQYDGXXXXXXXXXXXXXEEGVYYLTDHLYRVLSKLALM 245 D + I+L+ E++ A G Y+ + VYY TD YR+LS ++ Sbjct: 183 EMDLIIHIELYLYEAIIFLAYGNYEQCESVILDALAFSKKHQVYYKTDEFYRILSYQKVL 242 Query: 246 SGNLDEAGMYLDKAKLFVQVTEDEQSVQLVHLAE------------IRLANAERRYEEAI 293 + + ++ Y+ K++ F TED S +++L + I L + E ++ E + Sbjct: 243 TADKEQYLHYIKKSEQFAIFTEDTLSAAVINLLKAYYYNTITHEYTIALEHVE-QFREKL 301 Query: 294 MLGQKYQSKGTRYESGCCLQTGIALYHLGRDEEALAALSKVILPDDAYHPLDRAAVFTSY 353 + +Q G+ Y L+ G ALY L + EEAL L + I+PD HPLD A + T+ Sbjct: 302 KDERIFQDDGSYY-----LEKGKALYGLKQYEEALKTLQRAIIPDYINHPLDHARLTTAG 356 Query: 354 AYKAKIYARQGKMEEARQQSEIAYERVREYPPSVYTWFIEAT 395 AY+A Y + + A ++ AYE V+ YP S++T FI+ T Sbjct: 357 AYRALCYVKLNDKKRALEEVTEAYEIVQSYPDSIFTSFIKET 398 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,053,437,823 Number of extensions: 76821814 Number of successful extensions: 206292 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 206633 Number of HSP's successfully gapped: 97 Length of query: 402 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 264 Effective length of database: 1,760,596,133 Effective search space: 464797379112 Effective search space used: 464797379112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)