BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0033.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL58.1 B3KL58_9BACI 6,7-dimethyl-8-ribityllumazine synthase EC... 276 3e-73 B1DJA7.1 B1DJA7_9BACL 6,7-dimethyl-8-ribityllumazine synthase EC... 258 1e-67 C0ZKW1.1 C0ZKW1_BREBN 6,7-dimethyl-8-ribityllumazine synthase EC... 247 2e-64 C3HN39.1 C3HN39_BACTU 6,7-dimethyl-8-ribityllumazine synthase 240 2e-62 C3G7S7.1 C3G7S7_BACTU 6,7-dimethyl-8-ribityllumazine synthase 240 2e-62 >B3KL58.1 B3KL58_9BACI 6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 Length = 155 Score = 276 bits (707), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 129/155 (83%), Positives = 141/155 (90%) Query: 4 MPNYLEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEI 63 M EGHLVSEGL+YG+VVGRFNEFITSKLL GALDA KRHG D+E+DVAWVPG FEI Sbjct: 1 MATIFEGHLVSEGLKYGIVVGRFNEFITSKLLGGALDALKRHGAQDNEIDVAWVPGAFEI 60 Query: 64 PLIAQKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTE 123 PLIAQKMAESG+YDA+I LGTVIRGSTTHYDYVCNEVAKGV+AINLKTG+PTIFGVVTTE Sbjct: 61 PLIAQKMAESGKYDAIITLGTVIRGSTTHYDYVCNEVAKGVSAINLKTGVPTIFGVVTTE 120 Query: 124 NIEQAIERSGTKAGNKGWDAAASAIEMANLNKLFK 158 NIEQA+ER+GTKAGNKGWD+A +AIEMANL K K Sbjct: 121 NIEQAVERAGTKAGNKGWDSAMAAIEMANLTKSLK 155 >B1DJA7.1 B1DJA7_9BACL 6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 Length = 156 Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 121/154 (78%), Positives = 137/154 (88%) Query: 4 MPNYLEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEI 63 MPN E +VSEGLR+GVVVGRFNEFI+ KLLSGALD FKRHG D++VD+AWVPG FEI Sbjct: 1 MPNVFEASVVSEGLRFGVVVGRFNEFISGKLLSGALDGFKRHGAQDNDVDIAWVPGAFEI 60 Query: 64 PLIAQKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTE 123 PLIAQKMAESG+YDAVI LG VIRGST H+DYVCNE AKGVAAI LKTG+PTIFGV+T + Sbjct: 61 PLIAQKMAESGKYDAVITLGAVIRGSTPHFDYVCNEAAKGVAAIALKTGVPTIFGVLTVD 120 Query: 124 NIEQAIERSGTKAGNKGWDAAASAIEMANLNKLF 157 +IEQAIER+GTKAGNKG++AA SAIEMANL+KL Sbjct: 121 SIEQAIERAGTKAGNKGYEAAVSAIEMANLSKLL 154 >C0ZKW1.1 C0ZKW1_BREBN 6,7-dimethyl-8-ribityllumazine synthase EC=2.5.1.9 Length = 154 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 115/150 (76%), Positives = 131/150 (87%) Query: 8 LEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIA 67 EGHLV GLR G+V GRFNE I SKL+ GALDA KRHGV D++VDVAWVPG FEIPLIA Sbjct: 4 FEGHLVGTGLRVGIVAGRFNELIVSKLVGGALDALKRHGVEDEQVDVAWVPGAFEIPLIA 63 Query: 68 QKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQ 127 +KMAESGRYDAV+ LG VIRGST H+DYVCNE AKGVA+++L TGIP IFGV+TT+NIEQ Sbjct: 64 KKMAESGRYDAVVTLGAVIRGSTPHFDYVCNETAKGVASLSLSTGIPVIFGVLTTDNIEQ 123 Query: 128 AIERSGTKAGNKGWDAAASAIEMANLNKLF 157 AIER+GTKAGNKGW+AA +AIEMANL+K F Sbjct: 124 AIERAGTKAGNKGWEAATAAIEMANLSKQF 153 >C3HN39.1 C3HN39_BACTU 6,7-dimethyl-8-ribityllumazine synthase Length = 153 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/148 (76%), Positives = 133/148 (89%) Query: 8 LEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIA 67 EGHLV GL+ GVVVGRFNEFITSKLL GALD KRHGV ++++DVAWVPG FEIPLIA Sbjct: 3 FEGHLVGTGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPLIA 62 Query: 68 QKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQ 127 +KMA SG+YDAVI LGTVIRG+TTHYDYVCNEVAKGVA+++L+T IP IFGV+TTE IEQ Sbjct: 63 KKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQ 122 Query: 128 AIERSGTKAGNKGWDAAASAIEMANLNK 155 AIER+GTKAGNKG+++A +AIEMA+L+K Sbjct: 123 AIERAGTKAGNKGYESAVAAIEMAHLSK 150 >C3G7S7.1 C3G7S7_BACTU 6,7-dimethyl-8-ribityllumazine synthase Length = 153 Score = 240 bits (613), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 113/148 (76%), Positives = 133/148 (89%) Query: 8 LEGHLVSEGLRYGVVVGRFNEFITSKLLSGALDAFKRHGVADDEVDVAWVPGVFEIPLIA 67 EGHLV GL+ GVVVGRFNEFITSKLL GALD KRHGV ++++DVAWVPG FEIPLIA Sbjct: 3 FEGHLVGTGLKVGVVVGRFNEFITSKLLGGALDGLKRHGVEENDIDVAWVPGAFEIPLIA 62 Query: 68 QKMAESGRYDAVIALGTVIRGSTTHYDYVCNEVAKGVAAINLKTGIPTIFGVVTTENIEQ 127 +KMA SG+YDAVI LGTVIRG+TTHYDYVCNEVAKGVA+++L+T IP IFGV+TTE IEQ Sbjct: 63 KKMANSGKYDAVITLGTVIRGATTHYDYVCNEVAKGVASLSLQTDIPVIFGVLTTETIEQ 122 Query: 128 AIERSGTKAGNKGWDAAASAIEMANLNK 155 AIER+GTKAGNKG+++A +AIEMA+L+K Sbjct: 123 AIERAGTKAGNKGYESAVAAIEMAHLSK 150 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 904,925,119 Number of extensions: 33950234 Number of successful extensions: 86906 Number of sequences better than 1.0e-05: 1530 Number of HSP's gapped: 86093 Number of HSP's successfully gapped: 1530 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)