BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0032.p
         (104 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KL59.1 B3KL59_9BACI Chromosome segregation and condensation pr...   118   1e-25
B1DJA6.1 B1DJA6_9BACL Chromosome segregation and condensation pr...   105   2e-21
Q5KXL0.1 Q5KXL0_GEOKA Hypothetical conserved protein                  101   2e-20
C3IYK6.1 C3IYK6_9BACI Chromosome segregation and condensation pr...   101   2e-20
B7Y7Z2.1 B7Y7Z2_9BACI Chromosome segregation and condensation pr...   101   2e-20

>B3KL59.1 B3KL59_9BACI Chromosome segregation and condensation protein ScpA
          Length = 263

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 59/64 (92%), Positives = 61/64 (95%)

Query: 1  VTVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLV 60
          +TVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYM YL  MQELEL+ITSEFLV
Sbjct: 1  MTVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMAYLHNMQELELEITSEFLV 60

Query: 61 MAAT 64
          MAAT
Sbjct: 61 MAAT 64


>B1DJA6.1 B1DJA6_9BACL Chromosome segregation and condensation protein ScpA
          Length = 259

 Score =  105 bits (261), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 63/68 (92%)

Query: 1  VTVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLV 60
          +T+ YKLE+FEGPLDLLLHLIDK+EIDI ++ +SEIT+QYM+YL  M+ELEL++TSEFLV
Sbjct: 1  MTMHYKLESFEGPLDLLLHLIDKSEIDIHEVSISEITDQYMDYLNAMKELELELTSEFLV 60

Query: 61 MAATLLSI 68
          MAATLL+I
Sbjct: 61 MAATLLAI 68


>Q5KXL0.1 Q5KXL0_GEOKA Hypothetical conserved protein
          Length = 304

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 56/63 (88%)

Query: 6   KLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAATL 65
           K+E FEGPLDLLLHLI++ EIDI DIPV++ITEQYM Y+  MQELELDI SE+LVMAATL
Sbjct: 63  KIEAFEGPLDLLLHLINRYEIDIYDIPVAQITEQYMAYIHAMQELELDIASEYLVMAATL 122

Query: 66  LSI 68
           L+I
Sbjct: 123 LAI 125


>C3IYK6.1 C3IYK6_9BACI Chromosome segregation and condensation protein ScpA
          Length = 249

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 56/63 (88%)

Query: 6  KLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAATL 65
          K+E FEGPLDLLLHLI++ EIDI DIPV++ITEQYM Y+  MQELELDI SE+LVMAATL
Sbjct: 8  KIEAFEGPLDLLLHLINRYEIDIYDIPVAQITEQYMAYIHAMQELELDIASEYLVMAATL 67

Query: 66 LSI 68
          L+I
Sbjct: 68 LAI 70


>B7Y7Z2.1 B7Y7Z2_9BACI Chromosome segregation and condensation protein ScpA
          Length = 249

 Score =  101 bits (251), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 56/63 (88%)

Query: 6  KLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAATL 65
          K+E FEGPLDLLLHLI++ EIDI DIPV++ITEQYM Y+  MQELELDI SE+LVMAATL
Sbjct: 8  KIEAFEGPLDLLLHLINRYEIDIYDIPVAQITEQYMAYIHAMQELELDIASEYLVMAATL 67

Query: 66 LSI 68
          L+I
Sbjct: 68 LAI 70


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 413,712,434
Number of extensions: 10962835
Number of successful extensions: 34738
Number of sequences better than 1.0e-05: 850
Number of HSP's gapped: 34657
Number of HSP's successfully gapped: 850
Length of query: 104
Length of database: 3,060,696,203
Length adjustment: 72
Effective length of query: 32
Effective length of database: 2,382,383,123
Effective search space: 76236259936
Effective search space used: 76236259936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)