BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0031.p (150 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL59.1 B3KL59_9BACI Chromosome segregation and condensation pr... 202 9e-51 B1DJA6.1 B1DJA6_9BACL Chromosome segregation and condensation pr... 140 3e-32 C0ZC76.1 SCPA_BREBN Segregation and condensation protein A 100 6e-20 A7GS82.1 SCPA_BACCN Segregation and condensation protein A 79 2e-13 A6CMY1.1 A6CMY1_9BACI Segregation and condensation protein A 77 6e-13 >B3KL59.1 B3KL59_9BACI Chromosome segregation and condensation protein ScpA Length = 263 Score = 202 bits (514), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 97/149 (65%), Positives = 118/149 (79%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALSKAARRSSYQRI 61 L + E ERS+I++KE EDL P++P +N ++GLH +DLIAAF+KALSKA +R+SY RI Sbjct: 115 HLHEKEWERSMIYSKEAEDLTPYMPEVEENPVQGLHISDLIAAFQKALSKAVKRTSYARI 174 Query: 62 TRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAIFC 121 RDEISVKDRIR V AL++ G GGR+ FS LL +EM RHEIVVTFLAILELMKMK I C Sbjct: 175 QRDEISVKDRIRQVMDALEQVGPGGRILFSKLLHEEMERHEIVVTFLAILELMKMKQILC 234 Query: 122 YQEKLFDDIVMEWRGGGDLSGIQNAEINY 150 YQEKLF+DIVMEWRG + G+ AEI+Y Sbjct: 235 YQEKLFEDIVMEWRGEERIDGLSEAEIDY 263 >B1DJA6.1 B1DJA6_9BACL Chromosome segregation and condensation protein ScpA Length = 259 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/149 (53%), Positives = 110/149 (73%), Gaps = 3/149 (2%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALSKAARRSSYQRI 61 QL + E ERSLI+++EP+D+ P++ +I N L+GLH +DLIAAF++AL +AARR+ + Sbjct: 114 QLREKELERSLIYSREPDDMTPYMKEEIVNPLEGLHISDLIAAFQRALRRAARRNIVATV 173 Query: 62 TRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAIFC 121 RDEISVKDRIRD+ L++ +RFS L+ + M +HE+VVTFLAILELMKMK I C Sbjct: 174 QRDEISVKDRIRDIVEVLKQFEI---VRFSRLIRENMNKHEVVVTFLAILELMKMKHIRC 230 Query: 122 YQEKLFDDIVMEWRGGGDLSGIQNAEINY 150 +Q +LFDDIV+ WRG +G+ EI+Y Sbjct: 231 FQHQLFDDIVIHWRGEAADNGLSEVEIDY 259 >C0ZC76.1 SCPA_BREBN Segregation and condensation protein A Length = 254 Score = 100 bits (248), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 57/143 (39%), Positives = 84/143 (58%), Gaps = 6/143 (4%) Query: 3 LLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALSKAARRSSYQRIT 62 L +ME R+ +FT+ E+L P+V + D+T+ + DLI A K + K + ++ Sbjct: 116 LREMEIGRNQVFTRPAENLSPYVREE-DHTVTNVTLYDLINALEKLVKKTKEKEPMTTVS 174 Query: 63 RDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAIFCY 122 RDEIS+KDR+ ++ A++ +GG +RFS L R EIV TFLA+LELMK K I C Sbjct: 175 RDEISIKDRMTEIRQAVR---SGGMVRFSELFTQGATRTEIVTTFLALLELMKAKHITCV 231 Query: 123 QEKLFDDIVMEWRG--GGDLSGI 143 Q +LF DI++ G G G+ Sbjct: 232 QNQLFQDIIICENGTEGAHTDGL 254 >A7GS82.1 SCPA_BACCN Segregation and condensation protein A Length = 248 Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 4/132 (3%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALS-KAARRSSYQR 60 +L + E ER+ ++T+ P D F + N + D++AAF+K + K ++R R Sbjct: 112 ELKEREQERAQLYTRPPIDFTSFQQEEAANLPLDVTLYDMLAAFQKMMRRKKSKRPVTAR 171 Query: 61 ITRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAIF 120 ITR EI ++ R+ D+ L+ GGR F L DE R +VVTFLAILELMK + I Sbjct: 172 ITRQEIPIEQRMTDILQKLE--TLGGRQSFYDLFADE-EREVMVVTFLAILELMKHQQIV 228 Query: 121 CYQEKLFDDIVM 132 QE+ FD+I + Sbjct: 229 IEQEQNFDEIFL 240 >A6CMY1.1 A6CMY1_9BACI Segregation and condensation protein A Length = 253 Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 5/138 (3%) Query: 7 ESERSLIFTKEPEDLGPFVPAQIDNTL-KGLHTADLIAAFRKALS-KAARRSSYQRITRD 64 E ER ++TK P DL F ++ L + D++ AF K L K ++ +I+R Sbjct: 117 EEERGQMYTKPPSDLSQFADEKVTGQLDHDVTIYDMLGAFNKLLRRKKLQKPVTTKISRQ 176 Query: 65 EISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAIFCYQE 124 EI ++ R+ ++ L KGT + RF +L D E H +VVTFLA+LELMK K I Q+ Sbjct: 177 EIPIEKRMDEIMVHL--KGTRKKQRFFSLFDYEDREH-LVVTFLAVLELMKRKQIIVRQD 233 Query: 125 KLFDDIVMEWRGGGDLSG 142 + FDD ++ +L G Sbjct: 234 QNFDDFTVQSAEEAELVG 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 796,483,650 Number of extensions: 26840955 Number of successful extensions: 65638 Number of sequences better than 1.0e-05: 162 Number of HSP's gapped: 65751 Number of HSP's successfully gapped: 162 Length of query: 150 Length of database: 3,060,696,203 Length adjustment: 112 Effective length of query: 38 Effective length of database: 2,005,542,523 Effective search space: 76210615874 Effective search space used: 76210615874 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)