BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0030.p (152 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL60.1 B3KL60_9BACI Segregation and condensation protein B 239 8e-62 B1DJA5.1 B1DJA5_9BACL Segregation and condensation protein B 200 3e-50 C0ZC77.1 C0ZC77_BREBN Segregation and condensation protein B 170 3e-41 A7GS81.1 SCPB_BACCN Segregation and condensation protein B 163 4e-39 C2WBH2.1 C2WBH2_BACCE Segregation and condensation protein B 162 1e-38 >B3KL60.1 B3KL60_9BACI Segregation and condensation protein B Length = 201 Score = 239 bits (609), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 116/151 (76%), Positives = 138/151 (91%), Gaps = 2/151 (1%) Query: 3 HERGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEI 62 +ERG+Q+VQIAG+Y++ATL +HAPYFERLAYSPSR+SLSQAALETL+IVAYRQPITRVEI Sbjct: 52 YERGIQIVQIAGSYKIATLAEHAPYFERLAYSPSRSSLSQAALETLSIVAYRQPITRVEI 111 Query: 63 EEIRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPEPSNF 122 E+IRGVKSERAIHTL +K LI+EVGRAEA+GRPILYGTTKSFL+ FGLA++K+LPEPS F Sbjct: 112 EDIRGVKSERAIHTLVSKGLIEEVGRAEAIGRPILYGTTKSFLDYFGLANIKDLPEPSQF 171 Query: 123 DASTDDLEEETQLLFSKLDS-QMTFEDTEQT 152 + D LEEETQLLF KLD Q+TF+D E++ Sbjct: 172 E-DNDSLEEETQLLFDKLDGQQLTFDDVEES 201 >B1DJA5.1 B1DJA5_9BACL Segregation and condensation protein B Length = 206 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/142 (66%), Positives = 120/142 (84%), Gaps = 1/142 (0%) Query: 4 ERGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIE 63 +RG+QV ++AG YR+ T PDHA YFER+AY+P+R+ LSQAALETL+IVAYRQPITR++IE Sbjct: 53 QRGVQVTEVAGAYRMTTNPDHATYFERMAYTPTRSQLSQAALETLSIVAYRQPITRIDIE 112 Query: 64 EIRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPEPSNFD 123 EIRGVKS+RAI +L +KDLI+EVGRAEA+GRPILYGTTKSFL+ FGL ++K LPEP D Sbjct: 113 EIRGVKSDRAIQSLVSKDLIEEVGRAEAIGRPILYGTTKSFLDYFGLPNIKALPEPKQVD 172 Query: 124 ASTDDLEEETQLLFSKLDSQMT 145 + LEE+TQ+LF +L + T Sbjct: 173 IE-EALEEQTQMLFERLGERQT 193 >C0ZC77.1 C0ZC77_BREBN Segregation and condensation protein B Length = 194 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 86/136 (63%), Positives = 105/136 (77%), Gaps = 3/136 (2%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RG+Q+V++A Y+L TLP+H PYFERLA SP +++LSQAALETLAIVAY+QP+TR EIEE Sbjct: 54 RGIQIVEVAKAYQLTTLPEHVPYFERLATSPGQSTLSQAALETLAIVAYKQPLTRSEIEE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPEPS-NFD 123 IRGVK E+A++TL +K LI+E GRAE +GRPILY TTK FLE FGL +L +LPEP N D Sbjct: 114 IRGVKCEKALNTLLSKQLIREAGRAEGIGRPILYATTKEFLEHFGLRELGDLPEPPVNLD 173 Query: 124 ASTDDLEEETQLLFSK 139 L E LF K Sbjct: 174 IEEARL--EASALFGK 187 >A7GS81.1 SCPB_BACCN Segregation and condensation protein B Length = 190 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/113 (69%), Positives = 95/113 (84%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGLQ+VQ A YRLAT +HAPY+++L +P+ ASLSQAALETLAIVAYRQPITR+E+EE Sbjct: 54 RGLQIVQFAKAYRLATKKEHAPYYQKLMDTPTAASLSQAALETLAIVAYRQPITRMEMEE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 IRGVK+ERA+ TL + LI+EVGRAE GRPILYGTTK FL++FGL L +LP Sbjct: 114 IRGVKTERALQTLVSHLLIKEVGRAEGPGRPILYGTTKEFLDTFGLQTLDDLP 166 >C2WBH2.1 C2WBH2_BACCE Segregation and condensation protein B Length = 191 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/137 (60%), Positives = 102/137 (74%), Gaps = 4/137 (2%) Query: 4 ERGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIE 63 +RGLQ+VQ A YRLAT +HAPY+++L +P+ ASLSQAALETLAIVAYRQPITR EIE Sbjct: 53 QRGLQIVQFAKVYRLATKKEHAPYYQKLMDTPTAASLSQAALETLAIVAYRQPITRTEIE 112 Query: 64 EIRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPEPSNFD 123 EIRGVK++RA+ TL + LI+E GRAE GRPILYGTTK FL++FGL L +LP S+ + Sbjct: 113 EIRGVKTDRALQTLVSHLLIKETGRAEGPGRPILYGTTKEFLDTFGLQTLDDLPTLSDEN 172 Query: 124 ASTDDLEEETQLLFSKL 140 + E L F L Sbjct: 173 EQMN----EADLFFGSL 185 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.131 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 823,968,481 Number of extensions: 30358201 Number of successful extensions: 66216 Number of sequences better than 1.0e-05: 999 Number of HSP's gapped: 65527 Number of HSP's successfully gapped: 999 Length of query: 152 Length of database: 3,060,696,203 Length adjustment: 114 Effective length of query: 38 Effective length of database: 1,986,700,493 Effective search space: 75494618734 Effective search space used: 75494618734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 125 (52.8 bits)