BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0029.p
         (267 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DJA1.1 B1DJA1_9BACL Putative uncharacterized protein                 96   2e-18
B3KL61.1 B3KL61_9BACI Putative uncharacterized protein                 93   3e-17
C5D687.1 C5D687_9BACI BH3196-like protein                              75   8e-12
B4BPR4.1 B4BPR4_9BACI BH3196-like protein                              74   1e-11
C0ZH17.1 C0ZH17_BREBN Conserved hypothetical membrane protein          74   1e-11

>B1DJA1.1 B1DJA1_9BACL Putative uncharacterized protein
          Length = 229

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 99/196 (50%), Gaps = 2/196 (1%)

Query: 62  RLGKDDRIELDLKALFGLVKFHYELPALVFQGIEKGIKVKLEESGIAPVRKDQDLEEQID 121
           R G++D IE++ KALFGL+++  ++ ++ F G    +   L  + I    KD+   ++ID
Sbjct: 36  RDGENDDIEINFKALFGLLRYKLKIRSIDFSGKAIRLHEHLMGTSIGMSSKDEK-NDEID 94

Query: 122 KQSVAEWLKNIRIAMKATRGLNKWLKDTLAHVQITKLDWSTDFSMGDXXXXXXXXXXFWG 181
              V   ++  + A   T  L+ W K TLA V++ +  W +    GD           W 
Sbjct: 95  THRVMVGIEKYKRAAALTYNLSHWAKQTLAKVRLEEWKWFSYVGTGDAMWTAMATGALWS 154

Query: 182 LKWTLAGWLSRQVRLIKAPRMFVAPVFSDELSFSTQAVCAGKLSMGYAFYSGLQLLRRAS 241
           +K T  G LS+ V+L   PR+ V PV++    F T+  C  K+ +G A  +GL LL R  
Sbjct: 155 VKTTTLGVLSQFVKLSAEPRVEVQPVYAHT-CFRTEWTCIAKIGLGNAIMAGLHLLVRLR 213

Query: 242 KVPGGLRYWKKLLSRS 257
               G++ W+ LL ++
Sbjct: 214 NAKEGVQAWRSLLFKA 229


>B3KL61.1 B3KL61_9BACI Putative uncharacterized protein
          Length = 226

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 10/189 (5%)

Query: 72  DLKALFGLVKFHYELPALVFQGIEKGIKVKLEESGIAPVRKDQDLEEQIDKQS---VAEW 128
           ++K LFG +   YE+P   F     GI+ K E     PV +  +L  + +K++      +
Sbjct: 45  EMKMLFGWITRKYEVP---FHLANGGIEYKKET---VPVDEGTELGSKENKETSRRTIRY 98

Query: 129 LKNIRIAMKATRGLNKWLKDTLAHVQITKLDWSTDFSMGDXXXXXXXXXXFWGLKWTLAG 188
              +R+ +  T+G  KW + T+A V +  + WST  ++               +K T+ G
Sbjct: 99  RDYVRVLL-TTKGFKKWARQTMAAVHLMDVHWSTRIALEHAADTAVATGLLHAVKHTIMG 157

Query: 189 WLSRQVRLIKAPRMFVAPVFSDELSFSTQAVCAGKLSMGYAFYSGLQLLRRASKVPGGLR 248
           W+S ++ + + P + V PVF+     ST+  C  K+S G A Y+GL L+ R  KV GG+R
Sbjct: 158 WMSYRLIMDELPEIQVVPVFNGPPQISTELCCIAKISCGKAMYAGLVLIVRVLKVKGGVR 217

Query: 249 YWKKLLSRS 257
            W+  L ++
Sbjct: 218 SWQNTLFKA 226


>C5D687.1 C5D687_9BACI BH3196-like protein
          Length = 228

 Score = 74.7 bits (182), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 85/179 (47%), Gaps = 14/179 (7%)

Query: 66  DDRIELDLKALFGLVKFHYELPALVFQGIEKGIKVKLEE-----SGIAPVRKDQDLEEQI 120
           DD  ++  + LFG++++   +P +  +    GI V  +E     S   P R    LE+ I
Sbjct: 36  DDEWKITFRTLFGIIRYTIHIPLVKIETESPGIVVDHKETVKNISESKPNRSKYTLEDII 95

Query: 121 DK-QSVAEWLKNIRIAMKATRGLNKWLKDTLAHVQITKLDWSTDFSMGDXXXXXXXXXXF 179
           D  Q   E+ +++         LN  +K  L H+ ITK +W T    GD           
Sbjct: 96  DIFQKAKEFARHVV-------RLNAIIKKFLRHISITKFEWQTKIGTGDAAATGMIVGLG 148

Query: 180 WGLKWTLAGWLSRQVRLIKAPRMFVAPVFSDELSFSTQAVCAGKLSMGYAFYSGLQLLR 238
           W LK++L    S+ ++L  +P + + P F + +S  T+ VC     +G+A  +G+++++
Sbjct: 149 WSLKYSLVALFSKYMKLQTSPCLMITPSFHEAIS-ETKFVCMIHFRIGHAMLAGIRVVK 206


>B4BPR4.1 B4BPR4_9BACI BH3196-like protein
          Length = 229

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 96/201 (47%), Gaps = 14/201 (6%)

Query: 66  DDRIELDLKALFGLVKFHYELPALVFQGIEKGIKVK-LEESGIAPVRKDQDLEEQIDKQS 124
           DD  ++ ++ LFGL+++   +P +  +   +   V  + + G+   R  ++ + +   + 
Sbjct: 35  DDEYKIVVRTLFGLIRYTIRIPLIKLETESESPGVTFVHKEGVGGTRTKKEKKSKWTPRD 94

Query: 125 VAEWLKNIRIAMKATRGLNKWLKDTLAHVQITKLDWSTDFSMGDXXXXXXXXXXFWGLKW 184
           +A + + ++  +K    L++ +K    HV ITK +W T    GD           W LK+
Sbjct: 95  IAHFFRQVKQFLKQVVDLHEIMKQFYRHVTITKWEWRTTIGTGDAASTGLIAGLGWSLKY 154

Query: 185 TLAGWLSRQVRLIKAPRMFVAPVFSDELSFSTQAVCAGKLSMGYAFYSGLQLLRRASKVP 244
           T+ G +SR  ++   P + + P +   +S  T  +C  +  +G+A  +GL++        
Sbjct: 155 TIIGVVSRYTKMKTVPVIMIVPSYDRAVS-ETAFLCMFQFRIGHAMLAGLRV-------- 205

Query: 245 GGLRYW--KKLLSRSPQASSE 263
             +++W  ++L  R P A+ +
Sbjct: 206 --VKHWNGRRLPKRKPLAAKQ 224


>C0ZH17.1 C0ZH17_BREBN Conserved hypothetical membrane protein
          Length = 219

 Score = 74.3 bits (181), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 89/183 (48%), Gaps = 4/183 (2%)

Query: 62  RLGKDDRIELDLKALFGLVKFHYELPALVFQGIEKGIKVKLEESGIAPVRKDQDLEEQID 121
           R G+DD++E+ + A +G+++  YE+P L+ +  E G ++  +   I    K ++  +   
Sbjct: 28  REGEDDQLEITIAA-WGIIRRKYEIPILLLKMTEAGPELVAKVETIQHGSKLREKVKDFT 86

Query: 122 KQSVAEWLKNIRIAMKATRGLNKWLKDTLAHVQITKLDWSTDFSMGDXXXXXXXXXXFWG 181
           ++ V +W +N R  ++  R L   LKD    V+ TKL+W T    G            WG
Sbjct: 87  RRQVKKWYRNYRDVLERVRDLLPLLKDLFKQVRCTKLEWHTLLGTGQAAETGALTGLIWG 146

Query: 182 LKWTLAGWLSRQVRLIKAPRMFVAPVFSDELSFS-TQAVCAGKLSMGYAFYSGLQLLR-R 239
           +K  + G LS  + L   P M V PV++  L  +  QAV    L   + FY+    LR R
Sbjct: 147 VKSLIVGILSHSISLQTMPAMSVQPVWNQALLHTKVQAVLHFYLGQ-FVFYALKVFLRIR 205

Query: 240 ASK 242
            SK
Sbjct: 206 KSK 208


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.138    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,322,776,262
Number of extensions: 44677427
Number of successful extensions: 133146
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 133140
Number of HSP's successfully gapped: 17
Length of query: 267
Length of database: 3,060,696,203
Length adjustment: 133
Effective length of query: 134
Effective length of database: 1,807,701,208
Effective search space: 242231961872
Effective search space used: 242231961872
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 130 (54.7 bits)