BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0028.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3FAN1.1 C3FAN1_BACTU Putative uncharacterized protein 144 1e-32 C3HSX0.1 C3HSX0_BACTU Putative uncharacterized protein 141 6e-32 Q7NF33.1 Q7NF33_GLOVI Gll3694 protein 71 1e-10 C3YAF7.1 C3YAF7_BRAFL Putative uncharacterized protein (Fragment) 64 2e-08 B4VUV6.1 B4VUV6_9CYAN Putative uncharacterized protein 64 2e-08 >C3FAN1.1 C3FAN1_BACTU Putative uncharacterized protein Length = 280 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 147/293 (50%), Gaps = 28/293 (9%) Query: 3 FAKIWQADMEGNGLLPLIKGGSDTQKDPQKGYVIVNLNPQDGEAGGGNGKNQTTVFKEVV 62 + +IW ADM GNG+ P + D KGYV+V + + K + KEV Sbjct: 5 YQEIWDADMLGNGIQPTFNKDN---VDNNKGYVLV----EPTKVRTKEEKQDHMLIKEVH 57 Query: 63 IPDGKRYSYDLFRKLKNNYKSVSGGKDAVSAAEHEQIHEFLAYAAVSAPLRQARKYAEDH 122 IP+ K SYDL +KL NN+ ++ + E +++ E L YA S P++ R + E Sbjct: 58 IPNSKIQSYDLVKKLFNNFFLNPHLREDNTVEEQKEVDELLKYAIQSNPMKLCRTFVETR 117 Query: 123 HQIKAGCSKEEWVETLRSIWFQPSNDGT----SFFEHVFIGEQ---GSKWGGHQFWYSYH 175 S E+W L +IWF N + S FEHVF+GE+ GS G+ FWY Y+ Sbjct: 118 K--GTSLSDEQWYTYLHNIWFLQFNSKSGVNLSGFEHVFVGEKKKKGSSLNGYHFWYKYY 175 Query: 176 LNEGPDETLQKEDSNIVIKLAEARQTVKSSLAEVISIKYTLEETSKNGDKQTLTTDIGGL 235 L ++ L + D K+ K+S+ +VI+ +TLE + D L GG Sbjct: 176 L----EDQLGEND-----KITYLGPRDKNSVPDVITFAFTLEASDAQTDSTLLYKPKGGF 226 Query: 236 FVGISAEGLMALGTVAYLDGRA-RIPVELNGTSFDLIMHKTGDREEKPQSFYP 287 F+GIS EGL+ALG + D + +ELN ++DL+++ G R + +F+P Sbjct: 227 FIGISPEGLLALGAARFADTLSEHHTIELNNQNYDLVLYSFGKRSMR--TFFP 277 >C3HSX0.1 C3HSX0_BACTU Putative uncharacterized protein Length = 280 Score = 141 bits (356), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 146/293 (49%), Gaps = 28/293 (9%) Query: 3 FAKIWQADMEGNGLLPLIKGGSDTQKDPQKGYVIVNLNPQDGEAGGGNGKNQTTVFKEVV 62 + +IW ADM GNG+ P + D KGYV+V + + K + KEV Sbjct: 5 YQEIWDADMLGNGIQPTFNKDN---VDNNKGYVLV----EPTKVRTKEEKQDHMLIKEVH 57 Query: 63 IPDGKRYSYDLFRKLKNNYKSVSGGKDAVSAAEHEQIHEFLAYAAVSAPLRQARKYAEDH 122 IP+ K SYDL +KL NN+ ++ + E +++ E L YA S P++ R + E Sbjct: 58 IPNSKIQSYDLVKKLFNNFFLNPHLREDNTVEEQKEVDELLKYAIQSHPMKLCRTFVETR 117 Query: 123 HQIKAGCSKEEWVETLRSIWFQPSNDGT----SFFEHVFIGEQ---GSKWGGHQFWYSYH 175 S E+W L +IWF N + S FEHVF+GE+ GS G+ FWY Y+ Sbjct: 118 K--GTSLSDEQWYTYLHNIWFLQFNSKSGVNLSGFEHVFVGEKKKKGSSLSGYHFWYKYY 175 Query: 176 LNEGPDETLQKEDSNIVIKLAEARQTVKSSLAEVISIKYTLEETSKNGDKQTLTTDIGGL 235 L ++ L + D K+ K+S+ +VI+ +TLE + D L GG Sbjct: 176 L----EDQLGEND-----KITYLGPRDKNSVPDVITFAFTLEASDVQTDSYLLYKPKGGF 226 Query: 236 FVGISAEGLMALGTVAYLDGRA-RIPVELNGTSFDLIMHKTGDREEKPQSFYP 287 F+GIS EGL+ALG + D + +ELN ++DL ++ G R + +F+P Sbjct: 227 FIGISPEGLLALGAARFADTLSEHHTIELNNQNYDLALYSFGKRSMR--TFFP 277 >Q7NF33.1 Q7NF33_GLOVI Gll3694 protein Length = 483 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 120/263 (45%), Gaps = 38/263 (14%) Query: 57 VFKEVVIPDGKRYSYDLFRKLKNNYKSVSGGKDAVSAAEHEQIHEFLAYAAVSAPLRQAR 116 +F +V ++ +Y F L +NY + + ++ + E E+I ++L + P+R AR Sbjct: 91 LFAKVEEAKLRKPTYAAFIALLDNYATTARVAESYDSGEEEEIQDYLEVIRETVPVRLAR 150 Query: 117 KYAEDHHQIKAGCSKEEWVETLRSIWFQ--------PSNDGTSFFEHVFIGEQ--GSKWG 166 +Y + + S+ +++ LR IWF+ S + S FEHVF+GE +++G Sbjct: 151 EYI--NGDLGRNLSEVQFMAALRRIWFELFTNYFQGKSQEYCSGFEHVFVGEAKYDTRFG 208 Query: 167 ---------GHQFWYSYHLNEGPDETLQKEDSNIVIKLAEARQTVKSSLAEVISIKYTLE 217 G+ W + L+E N + + R V++++ E Sbjct: 209 GAENLGEISGYHNWIKFFLDEKFGRV------NFLGYKYDLRGEETPDNPNVVTLQMEWE 262 Query: 218 ETSKNGDK-QTLTTDIGGLFVGISAEGLMALGTVAYLDG------RARIPVELNGTSFDL 270 + G+ L GG FVG S E +A+GTVA+ + + + +NG ++L Sbjct: 263 LKNMGGETLARLFKKKGGFFVGTSPECEIAMGTVAFYESEQGLLRQEKRQTTINGARYNL 322 Query: 271 IMHKT----GDREEKPQSFYPQI 289 +++++ G R + +SFYP+ Sbjct: 323 VLYRSTTPQGSRGDFIRSFYPEF 345 >C3YAF7.1 C3YAF7_BRAFL Putative uncharacterized protein (Fragment) Length = 231 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 97/199 (48%), Gaps = 31/199 (15%) Query: 70 SYDLFRKLKNNYKSVSGGKDAVSAAEHEQIHEFLAYAAVSAPLRQARKYAEDHHQIKAG- 128 +Y F +L NNY+SV+ ++ +A + Q FL + +++A ++ + Sbjct: 54 TYKAFMQLLNNYESVTSVREQETALKTNQNRAFLDQCLKTKVMKEALRFLSSRKLVPLDE 113 Query: 129 CSKEEWVETLRSIWFQ----PSNDGT--SFFEHVFIGEQGSK--WGGHQFWYSYHLNEGP 180 +K+ + ETL ++WF+ PS DGT S FEHVF+GE ++ G H + Y Sbjct: 114 GNKKAFKETLYNLWFEPYPRPSGDGTHRSAFEHVFVGETMNRLVLGFHNWVQLYE----- 168 Query: 181 DETLQKEDSNIVIKLAEARQTVKSSLAEVISIKYTLEETSKNGDKQTLTTDIGGLFVGIS 240 ++ N+V + +A + ++I+I + S NG ++T G F+G S Sbjct: 169 ----EERLGNVVYQGCKAH----ACGDQIITIDF-----SWNGKRKTF----GSFFLGTS 211 Query: 241 AEGLMALGTVAYLDGRARI 259 E +A+ TV +L GR + Sbjct: 212 PEFELAIYTVCFLAGREEV 230 >B4VUV6.1 B4VUV6_9CYAN Putative uncharacterized protein Length = 572 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 42/253 (16%) Query: 67 KRYSYDLFRKLKNNYKSVSGGKDAVSAAEHEQIHEFLAYAAVSAPLRQARKYAEDHHQIK 126 K +Y F +L +NY + E ++ FLA + P++ AR Y + + Sbjct: 194 KDRTYSSFIQLLDNYAIRVAEPEKTVEEEVQEQQAFLAQIIKTKPMQLARTYI--NQNLG 251 Query: 127 AGCSKEEWVETLRSIWFQ--------PSNDGTSFFEHVFIGE------QGSK------WG 166 S+EE+ L+ IWF+ S + S FEHVF+GE GSK Sbjct: 252 ESLSEEEFRTKLQRIWFELYTNHYGGKSTEFASGFEHVFVGEGKFDIHSGSKKENFGKIS 311 Query: 167 GHQFWYSYHLNEGPDETLQKEDSNIVIKLAEARQTVKSSLAEVISIKYTLEETSKNGDK- 225 G+ W ++L+E + + N + + + S V++++ G+ Sbjct: 312 GYHSWVKFYLDE------KNQRVNYLGYKYDLKGEDGSQNPNVVTLQMINNVIDMQGNVI 365 Query: 226 QTLTTDIGGLFVGISAEGLMALGTVAYLDG-------RARIPVELNGTSFDLIMHKT--- 275 L GG FVG S E MA+ TVAY + + RI + N +++L+++++ Sbjct: 366 AKLFKPKGGFFVGPSPECEMAMATVAYYESVHGKITDKRRITI--NDATYNLVLYRSTNP 423 Query: 276 -GDREEKPQSFYP 287 G R E +SF+P Sbjct: 424 NGSRGEFIRSFFP 436 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,916,559,603 Number of extensions: 83718235 Number of successful extensions: 151183 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 151195 Number of HSP's successfully gapped: 11 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)