BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0025.p (236 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL64.1 B3KL64_9BACI Nucleoside recognition domain protein 283 1e-74 B1DJ98.1 B1DJ98_9BACL Nucleoside recognition domain protein 280 5e-74 C0ZC79.1 C0ZC79_BREBN Spore maturation protein A 263 7e-69 Q9KCJ7.1 Q9KCJ7_BACHD Spore maturation protein 229 2e-58 Q2B675.1 Q2B675_9BACI Spore maturation protein 221 3e-56 >B3KL64.1 B3KL64_9BACI Nucleoside recognition domain protein Length = 210 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 136/167 (81%), Positives = 154/167 (92%) Query: 6 MINGIWLGMILIGFVFAAVNGRMDAFTAAVFDGAKSGVTVSFGLISVLVFWMGMMRVAED 65 MIN IW+GMI+IGF FAAVNG +D+ T A FDGA++GVTVSFGLIS+LVFW+GMMR+AED Sbjct: 1 MINLIWMGMIVIGFGFAAVNGNIDSVTKAAFDGAQTGVTVSFGLISILVFWLGMMRLAED 60 Query: 66 AGLLKKIAKVLGPVVSFLFPDVPKGHPAIGYILSNMSANLLGLGNAATPMGIKAMQELQT 125 +GLLKK+A++LGPVV FLFPDVPK HPA+GYILSNMSANL GLGNAATPMGIKAMQELQ Sbjct: 61 SGLLKKVARLLGPVVRFLFPDVPKNHPAMGYILSNMSANLFGLGNAATPMGIKAMQELQK 120 Query: 126 LNPDKETATPAMCTLLALNTASITLIPATLIAIRLNYGSSDPAAIVG 172 LNPDKETA+PAMCTLLALNTASITLIP TLIAIRLNY S++P+ IVG Sbjct: 121 LNPDKETASPAMCTLLALNTASITLIPTTLIAIRLNYESANPSEIVG 167 >B1DJ98.1 B1DJ98_9BACL Nucleoside recognition domain protein Length = 232 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 133/172 (77%), Positives = 155/172 (90%) Query: 6 MINGIWLGMILIGFVFAAVNGRMDAFTAAVFDGAKSGVTVSFGLISVLVFWMGMMRVAED 65 M+N IWL I+I V AA+NGR+DA T A FDGAKSGVT+SFGLIS++VFW+GMMR+AED Sbjct: 1 MVNWIWLFFIVISVVVAAINGRIDAVTQAAFDGAKSGVTISFGLISIMVFWLGMMRIAED 60 Query: 66 AGLLKKIAKVLGPVVSFLFPDVPKGHPAIGYILSNMSANLLGLGNAATPMGIKAMQELQT 125 AG+LKK+AK+L PVV +LFPDVP HPA+GYI+SN+SANL GLGNAATPMGIKAMQELQ Sbjct: 61 AGVLKKMAKLLSPVVRWLFPDVPANHPAMGYIMSNLSANLFGLGNAATPMGIKAMQELQK 120 Query: 126 LNPDKETATPAMCTLLALNTASITLIPATLIAIRLNYGSSDPAAIVGTTLAA 177 LNPD+ETATPAMCTLLALNT+SITL+P TLIAIR+NYGS++PA IVGTTLAA Sbjct: 121 LNPDQETATPAMCTLLALNTSSITLVPTTLIAIRMNYGSANPAEIVGTTLAA 172 >C0ZC79.1 C0ZC79_BREBN Spore maturation protein A Length = 196 Score = 263 bits (673), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 123/170 (72%), Positives = 147/170 (86%) Query: 6 MINGIWLGMILIGFVFAAVNGRMDAFTAAVFDGAKSGVTVSFGLISVLVFWMGMMRVAED 65 M+N IWLG+I+I V AAV GRM+A AA F+GAK+GVTV GL+SVL FWMGMMR+AE Sbjct: 1 MLNVIWLGLIVISIVVAAVTGRMEAINAAAFEGAKTGVTVCLGLLSVLAFWMGMMRIAEK 60 Query: 66 AGLLKKIAKVLGPVVSFLFPDVPKGHPAIGYILSNMSANLLGLGNAATPMGIKAMQELQT 125 +GLL+ +A+VL P++ LFPDVPKGHPA+GYILSNMSANLLGLGNAATPMG+KAM+ELQ Sbjct: 61 SGLLELLARVLSPIIQVLFPDVPKGHPAMGYILSNMSANLLGLGNAATPMGLKAMEELQK 120 Query: 126 LNPDKETATPAMCTLLALNTASITLIPATLIAIRLNYGSSDPAAIVGTTL 175 LNPDK+ A+PAMCTLLA+NTASIT+IP T+IAIR+ YGS +P IVGTTL Sbjct: 121 LNPDKQNASPAMCTLLAINTASITIIPTTMIAIRMQYGSVNPVEIVGTTL 170 >Q9KCJ7.1 Q9KCJ7_BACHD Spore maturation protein Length = 197 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/172 (63%), Positives = 139/172 (80%) Query: 6 MINGIWLGMILIGFVFAAVNGRMDAFTAAVFDGAKSGVTVSFGLISVLVFWMGMMRVAED 65 MIN IW+GM++IG VFAA+NG M+ A+F GAK V + GLIS+LVFW+G+MRVA+ Sbjct: 1 MINYIWVGMLVIGIVFAAINGTMEEVNEAIFTGAKEAVAICIGLISILVFWLGLMRVAQQ 60 Query: 66 AGLLKKIAKVLGPVVSFLFPDVPKGHPAIGYILSNMSANLLGLGNAATPMGIKAMQELQT 125 AGLLK +++++ PV LFP+VP HPA+GYILSNMSAN+ GLGNAATPMGIKAM++L+ Sbjct: 61 AGLLKGLSRLMRPVAKRLFPEVPPDHPAMGYILSNMSANMFGLGNAATPMGIKAMEQLKE 120 Query: 126 LNPDKETATPAMCTLLALNTASITLIPATLIAIRLNYGSSDPAAIVGTTLAA 177 LN K++A+ +M TLLA+NTASITLIP T+I+IR+NYGS P IVGTTL A Sbjct: 121 LNGGKDSASRSMITLLAINTASITLIPTTVISIRMNYGSVSPTDIVGTTLVA 172 >Q2B675.1 Q2B675_9BACI Spore maturation protein Length = 195 Score = 221 bits (564), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 109/172 (63%), Positives = 133/172 (77%) Query: 6 MINGIWLGMILIGFVFAAVNGRMDAFTAAVFDGAKSGVTVSFGLISVLVFWMGMMRVAED 65 M+N IW+ M +IG VFA NG M AVF GAK VT+ GLIS+LVFW+GMMR+AED Sbjct: 1 MVNIIWVAMTVIGIVFAIFNGTMAEVNEAVFSGAKEAVTLCIGLISILVFWLGMMRIAED 60 Query: 66 AGLLKKIAKVLGPVVSFLFPDVPKGHPAIGYILSNMSANLLGLGNAATPMGIKAMQELQT 125 AGLLKK+A + PVV+ LFPDVPK HPA+GYILSNM AN+ GLGNAATP+GIKAM++L+ Sbjct: 61 AGLLKKLAFLFRPVVTRLFPDVPKDHPAMGYILSNMMANMFGLGNAATPLGIKAMEQLKA 120 Query: 126 LNPDKETATPAMCTLLALNTASITLIPATLIAIRLNYGSSDPAAIVGTTLAA 177 LN K A+ +M T LA+NT+S+TLIP T+IAIR+NY S+ P IVG TL A Sbjct: 121 LNGGKTEASRSMITFLAINTSSLTLIPTTVIAIRMNYHSASPTEIVGPTLIA 172 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,153,272,083 Number of extensions: 42069709 Number of successful extensions: 160696 Number of sequences better than 1.0e-05: 328 Number of HSP's gapped: 160623 Number of HSP's successfully gapped: 328 Length of query: 236 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 104 Effective length of database: 1,817,122,223 Effective search space: 188980711192 Effective search space used: 188980711192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)