BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0024.p (177 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL65.1 B3KL65_9BACI Nucleoside recognition domain protein 235 1e-60 B1DJ97.1 B1DJ97_9BACL Nucleoside recognition domain protein 215 1e-54 Q2B674.1 Q2B674_9BACI SpmB 191 2e-47 B2A4P5.1 B2A4P5_NATTJ Nucleoside recognition domain protein 176 7e-43 A4J3M2.1 A4J3M2_DESRM Nucleoside recognition domain protein 174 3e-42 >B3KL65.1 B3KL65_9BACI Nucleoside recognition domain protein Length = 177 Score = 235 bits (599), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 118/176 (67%), Positives = 139/176 (78%) Query: 1 LFQLISLISAWAIPVMITFIPLYAFTRKVPVYESFVEGAKDGFGTAIAIIPHLVGMLVAI 60 + I+++SAW+IP++I FIPLYA+TRKVPVYESFV+GAKDGF TAI IIPHLVGM+VAI Sbjct: 1 MLSWINIVSAWSIPIIIAFIPLYAYTRKVPVYESFVDGAKDGFSTAIGIIPHLVGMMVAI 60 Query: 61 SVFRASGALDFIMGFIAPALKGIXXXXXXXXXXXXXXXXXXXXXAYTTDLISVHGPDSLI 120 SVFR+SGAL+F +G+ P L+ + AYTT+LI +GPDS+I Sbjct: 61 SVFRSSGALEFFVGWTGPFLQSLGVPSEILPLGILRPLTGTGSLAYTTELIRAYGPDSMI 120 Query: 121 GMIASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDIVGFAASIAVCLLAF 176 G IASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSD+VGF A+IAVCLL F Sbjct: 121 GRIASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDLVGFIAAIAVCLLVF 176 >B1DJ97.1 B1DJ97_9BACL Nucleoside recognition domain protein Length = 177 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 110/177 (62%), Positives = 130/177 (73%) Query: 1 LFQLISLISAWAIPVMITFIPLYAFTRKVPVYESFVEGAKDGFGTAIAIIPHLVGMLVAI 60 +F+L + ISAW IP +I FIPLYA RKVPVYE+F+EGAKDGFGTAI IIP LVGM+VAI Sbjct: 1 MFELFTRISAWLIPAIIVFIPLYAAFRKVPVYETFIEGAKDGFGTAINIIPSLVGMMVAI 60 Query: 61 SVFRASGALDFIMGFIAPALKGIXXXXXXXXXXXXXXXXXXXXXAYTTDLISVHGPDSLI 120 S+FRASGA+D ++G + P + A+T DLI+ HGPDS+I Sbjct: 61 SMFRASGAMDLMLGAVRPLFDWLSIPTEVLPLGILRPLTGAGSLAFTADLIATHGPDSMI 120 Query: 121 GMIASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDIVGFAASIAVCLLAFS 177 G IASTIQGSTDTTLYVLTVYFGAVGIR +YALKVGLFSD+VGF A+I +CL F Sbjct: 121 GRIASTIQGSTDTTLYVLTVYFGAVGIRKTKYALKVGLFSDLVGFLAAIMICLYIFK 177 >Q2B674.1 Q2B674_9BACI SpmB Length = 176 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 100/174 (57%), Positives = 124/174 (71%) Query: 3 QLISLISAWAIPVMITFIPLYAFTRKVPVYESFVEGAKDGFGTAIAIIPHLVGMLVAISV 62 +++SLIS W IPV+I FI LY +KVP YESFV+G K+G A++IIP LVGMLVAI+V Sbjct: 2 EIVSLISLWFIPVLIGFILLYGTYKKVPTYESFVDGGKEGIKIAVSIIPFLVGMLVAITV 61 Query: 63 FRASGALDFIMGFIAPALKGIXXXXXXXXXXXXXXXXXXXXXAYTTDLISVHGPDSLIGM 122 FRASGAL+F+MGFI PA++ + T+DLI+ HGPDS IG Sbjct: 62 FRASGALEFMMGFIRPAMEAVGVPPEIAPLAIIRPISGTAALGMTSDLIAAHGPDSFIGR 121 Query: 123 IASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDIVGFAASIAVCLLAF 176 +AST+QGSTDTT YVLTVYFGAVGI+ ALKVGL +D+VGF A+IAV +L F Sbjct: 122 LASTLQGSTDTTFYVLTVYFGAVGIKKMGDALKVGLLADLVGFIAAIAVVMLVF 175 >B2A4P5.1 B2A4P5_NATTJ Nucleoside recognition domain protein Length = 177 Score = 176 bits (446), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 86/177 (48%), Positives = 117/177 (66%) Query: 1 LFQLISLISAWAIPVMITFIPLYAFTRKVPVYESFVEGAKDGFGTAIAIIPHLVGMLVAI 60 +F++++ IS WA+P MIT LY + +K+ V++ F+EGAK+GF T++ +IP LV ML A+ Sbjct: 1 MFEVVNFISKWAVPAMITITLLYGYFKKINVFDVFIEGAKEGFETSVKLIPSLVAMLSAL 60 Query: 61 SVFRASGALDFIMGFIAPALKGIXXXXXXXXXXXXXXXXXXXXXAYTTDLISVHGPDSLI 120 +FRASG +DFI+ I P + A TT+LI HGPDSL+ Sbjct: 61 GIFRASGGMDFILEIIEPVMDTFNIPTEVVPLALMRPISGSSTFAMTTELIHSHGPDSLV 120 Query: 121 GMIASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDIVGFAASIAVCLLAFS 177 G IAST+QGSTDTTL+VLTVYFGAVGI+ R+A+ VGL D VGF S+ +CL F+ Sbjct: 121 GRIASTMQGSTDTTLFVLTVYFGAVGIKKTRHAMGVGLVGDFVGFIVSVFICLAVFT 177 >A4J3M2.1 A4J3M2_DESRM Nucleoside recognition domain protein Length = 176 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 87/176 (49%), Positives = 115/176 (65%) Query: 1 LFQLISLISAWAIPVMITFIPLYAFTRKVPVYESFVEGAKDGFGTAIAIIPHLVGMLVAI 60 +++LI+ IS WAIPVM+ FIPL AF +KVPV+E+FVEGA+ GF TAI IP L MLVA+ Sbjct: 1 MYELINQISRWAIPVMLLFIPLLAFIKKVPVFETFVEGAEAGFSTAIKTIPFLTAMLVAV 60 Query: 61 SVFRASGALDFIMGFIAPALKGIXXXXXXXXXXXXXXXXXXXXXAYTTDLISVHGPDSLI 120 S+FRASGA++ + +I+P L + T++I HGPDS + Sbjct: 61 SIFRASGAMELLASWISPVLNMVGIPADILPHAVMRPLSGGAALGIATEIIKTHGPDSFV 120 Query: 121 GMIASTIQGSTDTTLYVLTVYFGAVGIRNGRYALKVGLFSDIVGFAASIAVCLLAF 176 G + ST+QGS+DTT YVLT+YFG+VGIR RYA+ GL +D ASI +C L F Sbjct: 121 GRLVSTMQGSSDTTFYVLTLYFGSVGIRKYRYAVASGLTADFTTLIASIMICKLMF 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 861,065,167 Number of extensions: 30265395 Number of successful extensions: 97144 Number of sequences better than 1.0e-05: 325 Number of HSP's gapped: 96867 Number of HSP's successfully gapped: 348 Length of query: 177 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 50 Effective length of database: 1,864,227,298 Effective search space: 93211364900 Effective search space used: 93211364900 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)