BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0020.p (174 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL68.1 B3KL68_9BACI Alkyl hydroperoxide reductase/ Thiol speci... 193 5e-48 B1DJ95.1 B1DJ95_9BACL Alkyl hydroperoxide reductase/ Thiol speci... 150 3e-35 C0ZC82.1 C0ZC82_BREBN Cytochrome c biogenesis protein 141 2e-32 P35160.2 RESA_BACSU Thiol-disulfide oxidoreductase resA 140 4e-32 A7Z664.1 A7Z664_BACA2 ResA EC=1.8.4.2 135 2e-30 >B3KL68.1 B3KL68_9BACI Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Length = 175 Score = 193 bits (490), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 89/172 (51%), Positives = 118/172 (68%) Query: 1 VGKARKPVQXXXXXXXXXXGGYAISSSVFGGDGKPREGGKAPSFXXXXXXXXXXXXXXYK 60 +GK++K VQ G YA+++ VFG D P+ G KA F Y+ Sbjct: 1 MGKSKKSVQIVILLAIILIGVYAVATVVFGSDEVPKVGQKAADFELLGMDGNVHTMSEYE 60 Query: 61 GKSVVLNFWGSWCAPCVKEMPALQAQWEKWKEQGVVVVGINVGEDQMTVENFVKQVDINF 120 GK+ V+NFWG++C PCV+EMPALQAQWEKW QGV ++GINVGE++MTVENFV Q + F Sbjct: 61 GKARVINFWGTYCPPCVREMPALQAQWEKWSSQGVEIIGINVGENKMTVENFVAQTGVKF 120 Query: 121 PVVMDTGRDAVRSYGVSPLPTTFFINTKGRVDSIHIGQLDLSTLDDQIRKLV 172 P++MD R+AV S+GV P+PTTFF+ G++D I IG+LDL+TLD QI +LV Sbjct: 121 PILMDPKRNAVASFGVGPMPTTFFVTASGKIDHIRIGELDLNTLDKQIEQLV 172 >B1DJ95.1 B1DJ95_9BACL Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Length = 175 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 2/175 (1%) Query: 1 VGKARKPVQXXXXXXXXXXGGYAISSSVFGG--DGKPREGGKAPSFXXXXXXXXXXXXXX 58 +GK RK VQ GGYAI +++F +G P+ G + P F Sbjct: 1 MGKYRKTVQIVILLAVLVVGGYAIGNTLFAARDEGIPKIGEQPPDFTLADLQGNTHNLSD 60 Query: 59 YKGKSVVLNFWGSWCAPCVKEMPALQAQWEKWKEQGVVVVGINVGEDQMTVENFVKQVDI 118 YKGK+VV+NFWGS+C PCVKEMP + Q+EKWK+ G+ V+ IN+ ED +TV NFV++ D+ Sbjct: 61 YKGKAVVINFWGSFCPPCVKEMPEFERQFEKWKDSGLEVLAINLSEDTLTVNNFVRRFDL 120 Query: 119 NFPVVMDTGRDAVRSYGVSPLPTTFFINTKGRVDSIHIGQLDLSTLDDQIRKLVE 173 ++P++ D R R YG+ PTTFF+ G + + +G + + +D ++ KL++ Sbjct: 121 SYPILRDVNRKTERKYGLESYPTTFFVKPDGTILDVFVGGMSENDIDSRVDKLLQ 175 >C0ZC82.1 C0ZC82_BREBN Cytochrome c biogenesis protein Length = 174 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/151 (42%), Positives = 96/151 (63%) Query: 22 YAISSSVFGGDGKPREGGKAPSFXXXXXXXXXXXXXXYKGKSVVLNFWGSWCAPCVKEMP 81 +A+ SS G + G AP+F KGK V+LNFWG+WC PC KEMP Sbjct: 23 FALYSSFVKDPGAVKVGSDAPNFSLEQLNGPELTLESLKGKGVILNFWGTWCEPCKKEMP 82 Query: 82 ALQAQWEKWKEQGVVVVGINVGEDQMTVENFVKQVDINFPVVMDTGRDAVRSYGVSPLPT 141 ALQ Q+ K+K++G+VV+G+N+GE + V+ FVKQ I+FP+++D + + Y + P+PT Sbjct: 83 ALQKQYTKFKDKGLVVLGVNIGESPVAVDPFVKQFGIDFPILLDRQSEITKLYRIGPIPT 142 Query: 142 TFFINTKGRVDSIHIGQLDLSTLDDQIRKLV 172 TFFI+ G V + IGQLD + ++ +I K++ Sbjct: 143 TFFIDPDGEVKEVFIGQLDEAMIESKITKIL 173 >P35160.2 RESA_BACSU Thiol-disulfide oxidoreductase resA Length = 179 Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 67/154 (43%), Positives = 92/154 (59%), Gaps = 1/154 (0%) Query: 21 GYAISSSVFGGDGKPREGGKAPSFXXXXXXXXXXXXXXYKGKSVVLNFWGSWCAPCVKEM 80 GY I ++VF G EG AP+F KGK V LNFWG+WC PC KE Sbjct: 22 GYTIYNAVFAGKESISEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEF 81 Query: 81 PALQAQWEKWKEQGVVVVGINVGEDQMTVENFVKQVDINFPVVMDTGRDAVRSYGVSPLP 140 P + Q++ +K QGV +V +NVGE ++ V NF+K +NFPVV+DT R + +Y VSPLP Sbjct: 82 PYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPLP 141 Query: 141 TTFFINTKGRVDSIHIGQLDLSTLDDQIRKLVEP 174 TTF IN +G+V + G + S + D + L++P Sbjct: 142 TTFLINPEGKVVKVVTGTMTESMIHDYMN-LIKP 174 >A7Z664.1 A7Z664_BACA2 ResA EC=1.8.4.2 Length = 179 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 1/154 (0%) Query: 21 GYAISSSVFGGDGKPREGGKAPSFXXXXXXXXXXXXXXYKGKSVVLNFWGSWCAPCVKEM 80 GY I ++V+ + EG KAP+F KGK V LNFWG+WC PC +E Sbjct: 23 GYTIYNAVYTNGERISEGSKAPNFALKDTEGRLIELSQLKGKGVFLNFWGTWCEPCKQEF 82 Query: 81 PALQAQWEKWKEQGVVVVGINVGEDQMTVENFVKQVDINFPVVMDTGRDAVRSYGVSPLP 140 P ++ Q++ +K+ GV VV +NVGE ++ V NF+K +NFPV +DT R + +YGVSP+P Sbjct: 83 PYMENQYKHFKDLGVEVVAVNVGESKIAVHNFMKTYGVNFPVALDTDRQVLDAYGVSPIP 142 Query: 141 TTFFINTKGRVDSIHIGQLDLSTLDDQIRKLVEP 174 TTF IN G+V + G + + D + L++P Sbjct: 143 TTFLINPDGKVVKVVTGTMTERMVHDYM-NLIKP 175 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 950,188,141 Number of extensions: 36141790 Number of successful extensions: 82185 Number of sequences better than 1.0e-05: 1990 Number of HSP's gapped: 81854 Number of HSP's successfully gapped: 1991 Length of query: 174 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 48 Effective length of database: 1,873,648,313 Effective search space: 89935119024 Effective search space used: 89935119024 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)