BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0018.p (420 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL70.1 B3KL70_9BACI Cytochrome c-type biogenesis protein CcsB 581 e-164 B1DJ92.1 B1DJ92_9BACL Cytochrome c-type biogenesis protein CcsB 552 e-155 C0ZC84.1 C0ZC84_BREBN Probable cytochrome c biogenesis protein 405 e-111 B7GKK1.1 B7GKK1_ANOFW ABC-type transport system involved in cyto... 371 e-101 C3IYL6.1 C3IYL6_9BACI Cytochrome c-type biogenesis protein CcsB 370 e-100 >B3KL70.1 B3KL70_9BACI Cytochrome c-type biogenesis protein CcsB Length = 417 Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 271/420 (64%), Positives = 340/420 (80%), Gaps = 3/420 (0%) Query: 1 MSLLDFSSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLIC 60 M+L+DFS D FI AF LY +F+++ +A+MGR++ R PE H A+WG+IAF+ +++GLI Sbjct: 1 MNLIDFSGDAFIVAFTLYCVAFIMYALAVMGRRFRKRDPEAHLAKWGKIAFVTTTIGLIG 60 Query: 61 HLAYFITRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMA 120 HL YF TRWAGSGH+PVSNMYEFM+FLSM +M+AF V++ IY+K +LG+FA+P++I+IMA Sbjct: 61 HLLYFFTRWAGSGHVPVSNMYEFMSFLSMAIMIAFLVLYFIYKKSLLGLFALPLAILIMA 120 Query: 121 YAAVFPQEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDR 180 YAAVFPQ+VQPLIPSL+S +L IHVTLAALG++FFAVGF AGLM+LLRTVNF G +K R Sbjct: 121 YAAVFPQQVQPLIPSLQSYWLGIHVTLAALGDAFFAVGFIAGLMHLLRTVNFGGTDKGSR 180 Query: 181 KQQRLVEFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMP 240 ++QR +E +F+I+V++GF+ SV++FR GY+ F N T+ P +STI KV Y MP Sbjct: 181 REQRWLELVMFAIVVLLGFILSVYSFRAGGYQAEF---NQTLVDPKTENSTIVKVEYNMP 237 Query: 241 PIVAPYHSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAV 300 P++APY SE ES QSFLGMK PL EAPSWM+GVNAGRK NTV + Sbjct: 238 PLIAPYQSETESMQSFLGMKSPLMEAPSWMHGVNAGRKLNTVVWSLVTGLILYGLLRLIL 297 Query: 301 RKPLGRAIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPK 360 RKPL + I P L +D +DLDEI+YRAIAIGFP+FTLG LIFAMIWA++AWGRFWGWDPK Sbjct: 298 RKPLAKFIQPALHRLDPDDLDEISYRAIAIGFPVFTLGGLIFAMIWAEIAWGRFWGWDPK 357 Query: 361 EVWALVTWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAGTD 420 EVWAL+TWLFYS YLHLRL+RGWQG+ S+WL+V+GF+VVMFTLVGVNL+IAGLHSYAGTD Sbjct: 358 EVWALITWLFYSVYLHLRLSRGWQGKYSSWLSVIGFIVVMFTLVGVNLIIAGLHSYAGTD 417 >B1DJ92.1 B1DJ92_9BACL Cytochrome c-type biogenesis protein CcsB Length = 419 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 264/418 (63%), Positives = 331/418 (79%) Query: 1 MSLLDFSSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLIC 60 MS +DFSSD FIAAFFLY +F+ + + I G+KWS R P++H RW RI+F+ S+LGLI Sbjct: 1 MSYVDFSSDAFIAAFFLYCFAFLFYVVTIAGKKWSNRDPKKHEQRWSRISFVTSTLGLIA 60 Query: 61 HLAYFITRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMA 120 HL +F TRW GSG IP SNMYEF+TFL M +M+AFT++++IYRK +LG+FA+P+ ++++A Sbjct: 61 HLTFFFTRWIGSGQIPTSNMYEFITFLGMAIMIAFTIVYAIYRKPLLGMFALPLVVLVVA 120 Query: 121 YAAVFPQEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDR 180 YA+VFPQEVQPLIP+L SI+L +HVT AALGE+FFAVGFAAGLMYLLR V+F K + Sbjct: 121 YASVFPQEVQPLIPALSSIWLKVHVTTAALGEAFFAVGFAAGLMYLLRVVDFKQTSKEAK 180 Query: 181 KQQRLVEFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMP 240 + Q VEF+L++I+++IGF+ VF FRGAGY+ F + NVTIDS G S+ + Y +P Sbjct: 181 RDQFWVEFSLYTIVLVIGFIAIVFIFRGAGYQATFTQENVTIDSKGVDHSSTDTAEYTLP 240 Query: 241 PIVAPYHSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAV 300 PIV PY+S + SFLGM KPLFEAPSWM GVNAGRK NTV Sbjct: 241 PIVKPYNSTADHMDSFLGMDKPLFEAPSWMKGVNAGRKLNTVIWSVIAGSILYGLIRLLF 300 Query: 301 RKPLGRAIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPK 360 RK +G IHP++D ID +DLDEI+YRAIAIGFP+FTLGALIFAMIWA +AWGRFWGWDPK Sbjct: 301 RKRIGAVIHPLMDDIDPDDLDEISYRAIAIGFPVFTLGALIFAMIWANIAWGRFWGWDPK 360 Query: 361 EVWALVTWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAG 418 EVWAL++WL+YSAYLH RL+RGWQG++S+WLAV+GF+V++FTLVGVNLVIAGLHSYAG Sbjct: 361 EVWALISWLYYSAYLHFRLSRGWQGKRSSWLAVIGFVVILFTLVGVNLVIAGLHSYAG 418 >C0ZC84.1 C0ZC84_BREBN Probable cytochrome c biogenesis protein Length = 409 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 205/418 (49%), Positives = 275/418 (65%), Gaps = 10/418 (2%) Query: 1 MSLLDFSSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLIC 60 M L+ S + AF LY S + F +A+ G+ W+GR P++H R+GRIA+ ++ +G + Sbjct: 1 MQLIQLSDWLLDIAFLLYVISSIFFAVAVTGKNWAGRDPKQHEGRYGRIAYWLAVIGFVA 60 Query: 61 HLAYFITRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMA 120 Y RW GH P SNM+EFM FL +++A+ +I+ IY+ +G F +P+ +I++A Sbjct: 61 QTGYVAARWIAGGHSPTSNMFEFMAFLDYCIILAYLIIYRIYKLTSIGAFVLPLGVIMLA 120 Query: 121 YAAVFPQEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDR 180 Y+ VFP+++ PLIPSL+S +L+IHVT AALGE AVGFAAGLMYL+RTV + Sbjct: 121 YSYVFPKQITPLIPSLQSYWLHIHVTTAALGEGILAVGFAAGLMYLIRTV----PQHIST 176 Query: 181 KQQRLVEFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMP 240 K + +E L +++++GF+ F +TVF +++ GQ KV Y +P Sbjct: 177 KSTKWLEIVLAVVLMLVGFILMDSTFARMDQKTVFEMKKEEMNAVGQ--KVKPKVEYILP 234 Query: 241 PIVAPYHSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAV 300 IVAP S I G PLFEAP+WM G +A RK NT+ Sbjct: 235 AIVAPADSTIIK----EGPMSPLFEAPTWMEGKDAARKLNTMLWSVLTGAILYGGLRLIF 290 Query: 301 RKPLGRAIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPK 360 RK LG AI P ++G+D LDEI+YRAI+IG+P+FTLGALIFAMIWA+ AWGRFWGWDPK Sbjct: 291 RKRLGAAIKPSVEGVDPELLDEISYRAISIGYPVFTLGALIFAMIWAEEAWGRFWGWDPK 350 Query: 361 EVWALVTWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAG 418 EVWALV WLFYSAYLHLRL+RGW G KSAW++V+GF++++ TLV VNLVIAGLHSYAG Sbjct: 351 EVWALVVWLFYSAYLHLRLSRGWIGAKSAWMSVIGFVIILITLVVVNLVIAGLHSYAG 408 >B7GKK1.1 B7GKK1_ANOFW ABC-type transport system involved in cytochrome c biogenesis, permease component Length = 391 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/417 (46%), Positives = 272/417 (65%), Gaps = 26/417 (6%) Query: 3 LLDFSSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLICHL 62 ++ SS + AF LY + + F AI +K +E RW + +V+ +G + L Sbjct: 1 MVQLSSTLLYIAFVLYLIATLFFGGAIRVKK------KEGLDRWATLGIVVTIIGFVAQL 54 Query: 63 AYFITRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMAYA 122 YFITRW +GH PVSN++EF TF MM++ AF VI+ IY+ +LG+F +PI+I+++AYA Sbjct: 55 GYFITRWIAAGHAPVSNLFEFTTFFGMMLVGAFIVIYFIYKTSLLGLFTLPIAILVIAYA 114 Query: 123 AVFPQEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDRKQ 182 ++FP+E+ PLIP+L+S +L+IHVT AA GE+ A+ FAAGL+YL+R V+ + K+ Sbjct: 115 SMFPREISPLIPALQSDWLHIHVTTAAAGEAILAISFAAGLIYLIRVVD----QSKSSKR 170 Query: 183 QRLVEFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMPPI 242 +EF LF +I +GF+ +FR AGYE F ID G+ D + Y MP + Sbjct: 171 TFWLEFVLFFLISTLGFVIVTTSFRVAGYEATFEW----IDKNGKQDEMV----YHMPAL 222 Query: 243 VAPYHSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAVRK 302 V P+ +++ G PL + P+ +N RK NTV +RK Sbjct: 223 VGPHEGVLKTD----GRMTPLVDTPAIINA----RKLNTVIWSLFAGLALYGLLRLVLRK 274 Query: 303 PLGRAIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPKEV 362 + A+ P++ ++ + +DEI YR++AIGFP+FTLGALIFAMIWAQ+AW RFWGWDPKEV Sbjct: 275 RIAAALQPLVKNVNLDLVDEIGYRSVAIGFPVFTLGALIFAMIWAQIAWTRFWGWDPKEV 334 Query: 363 WALVTWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAGT 419 WAL+TWLFY+A+LHLRL++GW G +SAWLAV+GF ++MF LV VNLVIAGLHSYAG+ Sbjct: 335 WALITWLFYAAFLHLRLSKGWHGERSAWLAVIGFAIIMFNLVAVNLVIAGLHSYAGS 391 >C3IYL6.1 C3IYL6_9BACI Cytochrome c-type biogenesis protein CcsB Length = 397 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 190/419 (45%), Positives = 270/419 (64%), Gaps = 22/419 (5%) Query: 1 MSLLDFSSDVFIAAFFLYSGSFMLFTIAIMGRKWSGRKPEEHTARWGRIAFIVSSLGLIC 60 M ++ SS + AF LY F AI + RK + RW ++ V+ +G + Sbjct: 1 MDMVQLSSTLLYIAFVLYLIGTFFFGGAIRDK----RKERQEKDRWSQLGISVTIIGFLA 56 Query: 61 HLAYFITRWAGSGHIPVSNMYEFMTFLSMMVMVAFTVIFSIYRKIILGVFAVPISIIIMA 120 + YF+TRW +GH PVSN++EF TF MM++ AF +I+ IYR +LG+FA+P++++++A Sbjct: 57 QVGYFVTRWIAAGHAPVSNLFEFTTFFGMMLVAAFIIIYFIYRLSVLGLFALPVALLVIA 116 Query: 121 YAAVFPQEVQPLIPSLKSIYLNIHVTLAALGESFFAVGFAAGLMYLLRTVNFAGKEKNDR 180 YA++FP+E+ PLIP+L+S +L+IHVT AA GE+ A+ F AGL+YL+R V+ + Sbjct: 117 YASMFPREISPLIPALQSDWLHIHVTTAAAGEAILAISFVAGLIYLIRVVD----QSKPS 172 Query: 181 KQQRLVEFTLFSIIVIIGFLGSVFAFRGAGYETVFVRSNVTIDSPGQGDSTIEKVSYKMP 240 K+ +E +F +I +GF+ AF +GYE F + + T+E V Y MP Sbjct: 173 KRTFWLEVVMFCLITTLGFVIVSTAFGLSGYEAKFTWVD-------KNKQTVE-VIYDMP 224 Query: 241 PIVAPYHSEIESFQSFLGMKKPLFEAPSWMNGVNAGRKFNTVXXXXXXXXXXXXXXXXAV 300 +V P+ E+ + G +PL E P+ +N +K NTV + Sbjct: 225 ALVGPHKGEL--MKESAGRMEPLVEMPAIINA----KKLNTVIWSLIAGTALYIMLRLLL 278 Query: 301 RKPLGRAIHPVLDGIDENDLDEITYRAIAIGFPIFTLGALIFAMIWAQVAWGRFWGWDPK 360 RK + A+ P++ ++ + DEI+YRA+AIGFP+FTLGALIFAMIWAQ+AW RFWGWDPK Sbjct: 279 RKRVAAALKPLVKNVNLDLTDEISYRAVAIGFPVFTLGALIFAMIWAQIAWTRFWGWDPK 338 Query: 361 EVWALVTWLFYSAYLHLRLARGWQGRKSAWLAVLGFLVVMFTLVGVNLVIAGLHSYAGT 419 EVWAL+TWLFY+A+LHLRL++GW G KSAWLAV+GF ++MF LV VNLVIAGLHSYAGT Sbjct: 339 EVWALITWLFYAAFLHLRLSKGWHGEKSAWLAVIGFAIIMFNLVAVNLVIAGLHSYAGT 397 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,405,371,942 Number of extensions: 97707599 Number of successful extensions: 348438 Number of sequences better than 1.0e-05: 875 Number of HSP's gapped: 347407 Number of HSP's successfully gapped: 1246 Length of query: 420 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 282 Effective length of database: 1,760,596,133 Effective search space: 496488109506 Effective search space used: 496488109506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)