BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0017.p (238 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL71.1 B3KL71_9BACI Response regulator receiver 443 e-123 B1DJ91.1 B1DJ91_9BACL Two component transcriptional regulator, w... 440 e-122 C0ZC85.1 C0ZC85_BREBN Two-component response regulator 375 e-102 A8VXP4.1 A8VXP4_9BACI Response regulator receiver protein 367 e-100 Q9KCJ1.1 Q9KCJ1_BACHD Two-component response regulator 357 4e-97 >B3KL71.1 B3KL71_9BACI Response regulator receiver Length = 238 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 214/238 (89%), Positives = 228/238 (95%) Query: 1 MAEHLNRILVVDDEERIRRLLKMYLEKEGYEIDEAEDGEIALRKATANDYGLILLDVMLP 60 M+EH NRILVVDDEERIRRLLKMYLEKEGYEI+EAEDGE ALRKA++ DYGL++LDVMLP Sbjct: 1 MSEHGNRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP 60 Query: 61 GIDGIEVLTRLRGVKSTPVLMLTAKGEEINRVQGFEMGADDYVVKPFSPREVIYRVKAIM 120 G+DG+EV TRLR VKSTP+LMLTAKGEEINRVQGFE+GADDYVVKPFSPREVIYRVKAI+ Sbjct: 61 GMDGVEVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIL 120 Query: 121 RRSSATAFLSKESNSSNNIVFPHLIIEHDAHRVTAGGQEVSLTPKEYELLHYLAISPDKV 180 RRSSATA+LSKE N SN+IVFPHLIIEHDAHRVTAGG E+SLTPKEYELLHYLA SPDKV Sbjct: 121 RRSSATAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKV 180 Query: 181 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEVPK 238 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVS ESAAMITTVWGVGYKLEVPK Sbjct: 181 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLEVPK 238 >B1DJ91.1 B1DJ91_9BACL Two component transcriptional regulator, winged helix family Length = 238 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/238 (88%), Positives = 228/238 (95%) Query: 1 MAEHLNRILVVDDEERIRRLLKMYLEKEGYEIDEAEDGEIALRKATANDYGLILLDVMLP 60 M+++ +RILVVDDEERIRRLLKMYLEKEGY IDEAEDGE ALR AT DY LILLDVMLP Sbjct: 1 MSDYASRILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLP 60 Query: 61 GIDGIEVLTRLRGVKSTPVLMLTAKGEEINRVQGFEMGADDYVVKPFSPREVIYRVKAIM 120 GIDG+EV +RLR VK+TPV+MLTAKGEE+NRVQGFE+GADDYVVKPFSPREVIYRVKAI+ Sbjct: 61 GIDGVEVCSRLRQVKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAIL 120 Query: 121 RRSSATAFLSKESNSSNNIVFPHLIIEHDAHRVTAGGQEVSLTPKEYELLHYLAISPDKV 180 RRSSATAFL+KE NSSNNIVFPHL+IEHDAHRV+AGGQEVSLTPKEYELLHYLA+SPDKV Sbjct: 121 RRSSATAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKV 180 Query: 181 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEVPK 238 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSP++A+MITTVWGVGYKLEVPK Sbjct: 181 FSREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLEVPK 238 >C0ZC85.1 C0ZC85_BREBN Two-component response regulator Length = 238 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 179/237 (75%), Positives = 208/237 (87%), Gaps = 1/237 (0%) Query: 3 EHLNRILVVDDEERIRRLLKMYLEKEGYEIDEAEDGEIALRKATANDYGLILLDVMLPGI 62 E + RILVVDDEERIRRLLKMYLE+E + IDEA++GE A+ A +DY +ILLD+MLPG+ Sbjct: 2 EKMARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPGM 61 Query: 63 DGIEVLTRLRGVKSTPVLMLTAKGEEINRVQGFEMGADDYVVKPFSPREVIYRVKAIMRR 122 DGIEV R+R K+TP++MLTAKGEE NRV GFE G DDYVVKPFSPREV+YRVKAI+RR Sbjct: 62 DGIEVCQRVREFKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRR 121 Query: 123 SSATAFLSKES-NSSNNIVFPHLIIEHDAHRVTAGGQEVSLTPKEYELLHYLAISPDKVF 181 SSATA+L E+ NS + +VFP L I+HDAH+V A GQEVSLTPKEYELLHYLA+SPDKVF Sbjct: 122 SSATAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVF 181 Query: 182 SREELLKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEVPK 238 +REELLKDVW+YEFFGDLRTVDTH+KRLREKLN+VSP++A MI TVWGVGYKLEVPK Sbjct: 182 TREELLKDVWHYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLEVPK 238 >A8VXP4.1 A8VXP4_9BACI Response regulator receiver protein Length = 237 Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust. Identities = 170/232 (73%), Positives = 204/232 (87%) Query: 7 RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGEIALRKATANDYGLILLDVMLPGIDGIE 66 RILVVDDEERIRRLLKMYLE+E Y++D+AE+GEIAL+KA DY LI+LD+M+PG+DGIE Sbjct: 6 RILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDGIE 65 Query: 67 VLTRLRGVKSTPVLMLTAKGEEINRVQGFEMGADDYVVKPFSPREVIYRVKAIMRRSSAT 126 V ++R K+TP++MLTAKGEE NRVQGFE G DDY+VKPFSPREV+ RVKA++RR+S T Sbjct: 66 VCEKIRKQKATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASTT 125 Query: 127 AFLSKESNSSNNIVFPHLIIEHDAHRVTAGGQEVSLTPKEYELLHYLAISPDKVFSREEL 186 AFL E+++ + +VFPHL I++DAHRVTA + +SLTPKEYELLHYLA +PDKVF+RE+L Sbjct: 126 AFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQL 185 Query: 187 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEVPK 238 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPE+ MI+TVWGVGYK E K Sbjct: 186 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFEAVK 237 >Q9KCJ1.1 Q9KCJ1_BACHD Two-component response regulator Length = 238 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 164/232 (70%), Positives = 203/232 (87%) Query: 7 RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGEIALRKATANDYGLILLDVMLPGIDGIE 66 +ILVVDDE+RIR LLKMYLE+E Y+++EA DG+ AL KA A DY +ILLD+M+P +DGIE Sbjct: 6 KILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPEMDGIE 65 Query: 67 VLTRLRGVKSTPVLMLTAKGEEINRVQGFEMGADDYVVKPFSPREVIYRVKAIMRRSSAT 126 V +LR K+TP++MLTAKGEE NRVQGFE+G DDY+VKPFSPREV+ RVKA++RRSS+T Sbjct: 66 VCQKLRKQKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSST 125 Query: 127 AFLSKESNSSNNIVFPHLIIEHDAHRVTAGGQEVSLTPKEYELLHYLAISPDKVFSREEL 186 FL ++ + + +VFPHL I++DAHRVT QE++LTPKEYELL+YLA SPDKVFSRE+L Sbjct: 126 KFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQL 185 Query: 187 LKDVWNYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEVPK 238 LKDVWNY+FFGDLRTVDTH+KRLREKLN+VSP++A+MI+TVWGVGYK EV K Sbjct: 186 LKDVWNYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFEVVK 237 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,376,392,517 Number of extensions: 54235163 Number of successful extensions: 284227 Number of sequences better than 1.0e-05: 33321 Number of HSP's gapped: 249446 Number of HSP's successfully gapped: 33570 Length of query: 238 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 106 Effective length of database: 1,817,122,223 Effective search space: 192614955638 Effective search space used: 192614955638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)