BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0014.p (330 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3CU70.1 C3CU70_BACTU 3-oxoacyl-[acyl-carrier-protein] synthase III 359 2e-97 A6M0L2.1 A6M0L2_CLOB8 Beta-ketoacyl-acyl-carrier-protein synthas... 283 2e-74 C1PDP3.1 C1PDP3_BACCO Beta-ketoacyl-acyl-carrier-protein synthas... 280 2e-73 B2V119.1 B2V119_CLOBA 3-oxoacyl-[acyl-carrier-protein] synthase III 261 6e-68 B9DWQ8.1 B9DWQ8_CLOK1 Putative uncharacterized protein 259 2e-67 >C3CU70.1 C3CU70_BACTU 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 330 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 160/330 (48%), Positives = 226/330 (68%) Query: 1 MAGIRIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSLTMA 60 M IRIK +DIYHP NDF+++HF EKG DI L +GRESRY I+ EN LTMA Sbjct: 1 MTNIRIKAVDIYHPKTARTNDFYLKHFAEKGKDISRFLKMMGRESRYIIEDKNENGLTMA 60 Query: 61 FEAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAG 120 EA VL + ++G ++D+I +++QTPEY FPTN++++H+ I G + IC+DSN+NCAG Sbjct: 61 IEATKRVLRQVNMSGEEMDMIVFSTQTPEYTFPTNAILVHKEIQGKAETICMDSNSNCAG 120 Query: 121 MTASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSV 180 M +VEQ R MM+NP ++ ALV+GSDH + H + +D + Y N+GDA++A+ILE+ E Sbjct: 121 MLVAVEQTCRYMMSNPNVKHALVVGSDHNSIHCNPDDEITYPNYGDASSAIILEKVEEDT 180 Query: 181 GFIDSIYQTDTCVYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTL 240 GFIDS+Y TD+ N +FPA GL+N+ + + +IPFD ++CV A SI +L Sbjct: 181 GFIDSMYYTDSTDAHNILFPACGLSNIYNPENKTKDMQINWIPFDGTVCVPPAVSSIKSL 240 Query: 241 LSNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRA 300 L+ +G++ E I + CFSQ SL NI + K G VY+GDEFGYT TSSPF+AL++ Sbjct: 241 LTKHGLEKEDIGSYCFSQFSLKNIEVIQEKLGEDKQKFVYVGDEFGYTGTSSPFIALYKG 300 Query: 301 VTTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 + +GKI+RGD V+FW+VG GWQ + + +Y Sbjct: 301 IQSGKIKRGDHVVFWSVGTGWQIITMLFKY 330 >A6M0L2.1 A6M0L2_CLOB8 Beta-ketoacyl-acyl-carrier-protein synthase I EC=2.3.1.41 Length = 328 Score = 283 bits (723), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 131/329 (39%), Positives = 214/329 (65%), Gaps = 3/329 (0%) Query: 3 GIRIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLA-ALGRESRYSIDSSEENSLTMAF 61 GIR+ ID+ H S+ + ND +++HF+++ D+ LL +GR+ R+ + +E +L++A Sbjct: 2 GIRLSCIDVCHASEVVSNDIYLKHFEKQDKDVEHLLVDIMGRDKRFMFNE-QETTLSLAV 60 Query: 62 EAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGM 121 + A +VLDK LTG+DID++ Y+S EY+ P S++IH+ + + +C D NANCAGM Sbjct: 61 KVAKSVLDKANLTGSDIDVLVYSSILSEYVAPATSILIHKELNAGRNVMCFDMNANCAGM 120 Query: 122 TASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSVG 181 T ++E +S + ++ R +RAL+IG D V AD N+ + Y N+G AA A+ILE+ E G Sbjct: 121 TVALENMSNYLESSKRAKRALIIGCDDVDSLADPNNELCYGNYGHAACAIILEKVEEECG 180 Query: 182 FIDSIYQTDTCVYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTLL 241 +D+ Y +T N M+P+EG +N ++ E +K++PFD CV A+E +L Sbjct: 181 IVDAEYYINTEESHNIMYPSEGFSNFFKSK-DVSELYLKWLPFDGGACVYPAAEIAKKML 239 Query: 242 SNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRAV 301 NG++ E IK CFSQ + NI+ + IG+D ++YIG+++GYT T+SPF+AL+ ++ Sbjct: 240 KKNGLENEDIKMFCFSQFAFINIKNIRQLLDIGEDKSIYIGNKYGYTGTTSPFIALYESI 299 Query: 302 TTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 GK++RGD V+FWT+G+G Q++ + +Y Sbjct: 300 KEGKVKRGDYVIFWTIGSGSQSIVMLYKY 328 >C1PDP3.1 C1PDP3_BACCO Beta-ketoacyl-acyl-carrier-protein synthase III EC=2.3.1.180 Length = 332 Score = 280 bits (715), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/332 (41%), Positives = 207/332 (62%), Gaps = 5/332 (1%) Query: 2 AGIRIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSLTMAF 61 + + I+++ +YHP K ND+++ HF ++G DI LL ALGRE+RY D E +LTMA Sbjct: 3 SSVTIREVSVYHPEKVRHNDYYLAHFRQQGKDITRLLQALGRENRYIADYKTETTLTMAV 62 Query: 62 EAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGM 121 EA+ VL+K+GL G D+D+I + S TPEY +P N++ IH+ +GG A+ D NA C GM Sbjct: 63 EASKKVLEKSGLAGRDLDMIVFVSGTPEYFWPPNAVAIHQSLGGKEEAVVYDMNAACVGM 122 Query: 122 TASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEH-SV 180 +V+QVSR M+ANP I+RALV+GS+ + A++ D V YA+FGD AAA++LE+ H Sbjct: 123 VVAVDQVSRNMLANPHIKRALVVGSEQMHRFANEGDAVTYASFGDGAAAVLLEKSHHVKT 182 Query: 181 GFIDSIYQTDTCVYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTL 240 GFIDS YQ +T FPA G++ L +K+ ++ + + + L Sbjct: 183 GFIDSAYQVNTESIDKITFPACGVSQLVEGKAEQKNRKIKWENVNNDNAFLSTAALVEKL 242 Query: 241 LSNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVY--IGDEFGYTSTSSPFVALH 298 LS N + + I+A CFSQLS NI + + +D++ + +G E+GYT +SPF+A Sbjct: 243 LSRNHLTAKDIQAFCFSQLSRKNIYKI--QEIFKEDISKFPIVGTEYGYTGAASPFMAFE 300 Query: 299 RAVTTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 RAV+TG+I RG +FW+VGAG A + ++ Sbjct: 301 RAVSTGRITRGSYAIFWSVGAGTSACAMLYKH 332 >B2V119.1 B2V119_CLOBA 3-oxoacyl-[acyl-carrier-protein] synthase III Length = 328 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 199/328 (60%), Gaps = 1/328 (0%) Query: 3 GIRIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLAALGRESRYSIDSSEENSLTMAFE 62 I+I+ I+ +P + N+F+I HF E+G DI LL A GR+ R +++ + +L+M + Sbjct: 2 NIKIRAIETEYPENIVNNEFYINHFKEQGKDIHRLLEAFGRKERRIVNNDTDTTLSMGIQ 61 Query: 63 AASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGMT 122 A+ VL+ L G DIDLI ++SQ PEYI PT +L++H + G + I +D N NC GM Sbjct: 62 ASLKVLESANLKGEDIDLIIFSSQFPEYICPTQALIVHNAVKGKNDTIVMDLNVNCLGML 121 Query: 123 ASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSVGF 182 +++ SRQ++ N +++RAL+IGSD+ + H ++D + Y F DAA A+ILE+ + GF Sbjct: 122 VTLDTASRQLLQNKKLKRALIIGSDYASIHMKRSDELCYPMFADAACAMILEKTDEECGF 181 Query: 183 IDSIYQTDTCVYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTLLS 242 IDS Y TD+ Y M+P G ++ ++ + + + DD + +D A SIN LL Sbjct: 182 IDSDYFTDSKKYSAVMYPQCGSSSYYKDTTSYDDMKFGWSECDDDV-IDIAVNSINKLLK 240 Query: 243 NNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRAVT 302 +N ++ I A C SQ +LP I + + + +++GD+FGYT TSSP +A + V Sbjct: 241 DNNLNISDISAFCLSQFALPIINGCIDRLRLDSEKVIFVGDKFGYTGTSSPLMAFNDGVK 300 Query: 303 TGKIERGDKVLFWTVGAGWQNVAFVMEY 330 +GKI+RGD V+FW++ A + + +Y Sbjct: 301 SGKIKRGDYVVFWSIAATRTACSVLYKY 328 >B9DWQ8.1 B9DWQ8_CLOK1 Putative uncharacterized protein Length = 328 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 125/329 (37%), Positives = 204/329 (62%), Gaps = 3/329 (0%) Query: 3 GIRIKDIDIYHPSKKIGNDFFIQHFDEKGIDIRGLLA-ALGRESRYSIDSSEENSLTMAF 61 G+++ IDI H SK + NDF+++HF+++G + LL +GR+ R+ D +E +L+ A Sbjct: 2 GVKLSCIDICHGSKVVSNDFYLKHFEKQGKHVNHLLEDIMGRDKRFMFDD-DETTLSSAL 60 Query: 62 EAASNVLDKTGLTGADIDLIAYASQTPEYIFPTNSLMIHRLIGGPSHAICIDSNANCAGM 121 + + +VL K LTG DID+I +S EYI P+ S+++H+ + + +C D NANCAGM Sbjct: 61 KVSKSVLVKADLTGNDIDMIICSSILSEYIAPSMSILLHKELNAGRNVMCFDMNANCAGM 120 Query: 122 TASVEQVSRQMMANPRIRRALVIGSDHVAPHADKNDPVYYANFGDAAAALILERDEHSVG 181 T ++E S ++++ R ++AL++G D + D N+ + Y N+G AA A++LE+ + G Sbjct: 121 TVALELASNYLISSNRAKKALIVGCDDMHSLIDPNNELCYGNYGHAACAIVLEKVNENCG 180 Query: 182 FIDSIYQTDTCVYGNSMFPAEGLANLGRNGVAAGEFNVKFIPFDDSICVDAASESINTLL 241 +D Y +T N M P G ++ ++ EF+ K++PFD CV A+E + +L Sbjct: 181 ILDEEYYINTEESENIMCPRNGFSSFFKSK-NVDEFSFKWLPFDGGACVYPAAEIMTRML 239 Query: 242 SNNGIDPESIKAACFSQLSLPNIRAVSGKTGIGDDVAVYIGDEFGYTSTSSPFVALHRAV 301 G+ E I CFSQ + NI + I +D +VY+GD +GYTSTSSPF+AL+ A+ Sbjct: 240 KKKGLTQEDISMFCFSQFAFSNIEHIRELMNIDEDKSVYVGDRYGYTSTSSPFIALYEAI 299 Query: 302 TTGKIERGDKVLFWTVGAGWQNVAFVMEY 330 GK++RGD V+FWT+G+G Q++ + +Y Sbjct: 300 EQGKVKRGDYVVFWTIGSGSQSIVMLYKY 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,941,470,503 Number of extensions: 79264885 Number of successful extensions: 189971 Number of sequences better than 1.0e-05: 1732 Number of HSP's gapped: 187946 Number of HSP's successfully gapped: 1734 Length of query: 330 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 194 Effective length of database: 1,779,438,163 Effective search space: 345211003622 Effective search space used: 345211003622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)