BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0012.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6LW02.1 A6LW02_CLOB8 Carboxymuconolactone decarboxylase               78   2e-13
C3BU80.1 C3BU80_9BACI Putative uncharacterized protein                 72   1e-11
Q7VG56.1 Q7VG56_HELHP Putative uncharacterized protein                 72   2e-11
C0DYP4.1 C0DYP4_EIKCO Putative uncharacterized protein                 70   9e-11
A6CP75.1 A6CP75_9BACI Putative uncharacterized protein                 70   9e-11

>A6LW02.1 A6LW02_CLOB8 Carboxymuconolactone decarboxylase
          Length = 121

 Score = 78.2 bits (191), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 1   VENTINSGLRHFSNLSGNYGAKALAPIKEHFPELAEYIMGNAYGDIFQRTTIGSDWKEIA 60
           +EN    GL   + + GN G   +  +K+  P+LA+YI+  A+GDI+ R       +E+ 
Sbjct: 1   MENRYEKGLNKLNEVDGNAGTAVIESLKDIAPDLAKYIIEFAFGDIYTRPVFDLKQRELV 60

Query: 61  VISSLITMGQFE-QLGVHYVMALSVGMTVDQIKGILLHLVPVVGAPRVISAFNV 113
            +S+L T+G  E QL VH   AL+VG++ ++I  + L  +P VG P+V++A  V
Sbjct: 61  TLSALTTLGGCENQLKVHINGALNVGISKEEIIEVFLQCIPYVGFPKVLNAVAV 114


>C3BU80.1 C3BU80_9BACI Putative uncharacterized protein
          Length = 128

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 64/115 (55%), Gaps = 1/115 (0%)

Query: 7   SGLRHFSNLSGNYGAKALAPIKEHFPELAEYIMGNAYGDIFQRTTIGSDWKEIAVISSLI 66
            G +    + G  G + +  +K+  P+L +Y++  A+GDI+ R  +    +++  I+SL 
Sbjct: 8   RGWKKLMEVDGEGGQRVIDSLKDIAPDLGKYVVEFAFGDIYPREGLNLKQRQLVTIASLT 67

Query: 67  TMGQFE-QLGVHYVMALSVGMTVDQIKGILLHLVPVVGAPRVISAFNVLLATLEE 120
           T G  E QL VH   AL+VG++ D+I   ++H +P  G PRV++A  V     EE
Sbjct: 68  TQGGCEPQLNVHINAALNVGLSPDEIIEAIMHCIPYTGFPRVLNAIFVAKQIFEE 122


>Q7VG56.1 Q7VG56_HELHP Putative uncharacterized protein
          Length = 169

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 1   VENTINSGLRHFSNLSGNYGAKALAPIKEHFPELAEYIMGNAYGDIFQRTTIGSDWKEIA 60
           ++     GL+   ++ G  G+K ++ +++  P+L  +I+  A+GDI+ R  +    +E+ 
Sbjct: 46  MQTRFEKGLKQLQSIDGEAGSKVISSLEDIAPDLGRFIIEFAFGDIYTRGELNLQEREMI 105

Query: 61  VISSLITMGQFE-QLGVHYVMALSVGMTVDQIKGILLHLVPVVGAPRVISAFNVLLATLE 119
            +SSL+T G  E QL VH   AL+VG++ ++I   L+  +P  G P+V++A  V     +
Sbjct: 106 TLSSLLTAGGCEAQLEVHINAALNVGISKEKIIECLMQCIPYTGFPKVLNAVFVAKKVFK 165

Query: 120 E 120
           E
Sbjct: 166 E 166


>C0DYP4.1 C0DYP4_EIKCO Putative uncharacterized protein
          Length = 126

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 2   ENTINSGLRHFSNLSGNYGAKALAPIKEHFPELAEYIMGNAYGDIFQRTTIGSDWKEIAV 61
           ++ +  GL   + + G  G K +  + +  P+L +YI+G A+G+I+QR  +    +E+  
Sbjct: 5   QDLMARGLAKLNEIDGEQGDKVMQALADISPDLGKYIIGFAFGEIYQRPQLDVRQRELVT 64

Query: 62  ISSLITMGQFE-QLGVHYVMALSVGMTVDQIKGILLHLVPVVGAPRVISA 110
           +++L   G  E QL VH   +L+VG+T D+I    +  +P +G P+V++A
Sbjct: 65  LAALAAQGGCENQLRVHIHASLNVGLTRDEIVEAFIQCIPYLGFPKVLNA 114


>A6CP75.1 A6CP75_9BACI Putative uncharacterized protein
          Length = 128

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%)

Query: 5   INSGLRHFSNLSGNYGAKALAPIKEHFPELAEYIMGNAYGDIFQRTTIGSDWKEIAVISS 64
           ++ GL      +G+     L  IK+  P     ++   +GD++ R  +    + + V+SS
Sbjct: 5   LSKGLEAVEEYAGSEALTVLEGIKQFSPSFYHMMLEFGFGDVYTRPNLDFQQRNLIVLSS 64

Query: 65  LITMGQFEQLGVHYVMALSVGMTVDQIKGILLHLVPVVGAPRVISA 110
           LIT G  EQL VH+  A+  G+T DQI  ++LH +P  G P+ +SA
Sbjct: 65  LITQGASEQLPVHFHAAIKAGLTPDQILEVILHSIPYAGFPKSLSA 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.138    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 695,705,745
Number of extensions: 25375416
Number of successful extensions: 57560
Number of sequences better than 1.0e-05: 110
Number of HSP's gapped: 57606
Number of HSP's successfully gapped: 110
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)