BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0004.p (197 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KL74.1 B3KL74_9BACI Abortive infection protein 283 6e-75 B1DJ85.1 B1DJ85_9BACL Abortive infection protein 242 1e-62 B7GHL4.1 B7GHL4_ANOFW Predicted metal-dependent membrane proteas... 125 2e-27 C5D3I6.1 C5D3I6_9BACI Abortive infection protein 123 1e-26 Q2B648.1 Q2B648_9BACI Putative uncharacterized protein 122 1e-26 >B3KL74.1 B3KL74_9BACI Abortive infection protein Length = 199 Score = 283 bits (724), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 129/183 (70%), Positives = 153/183 (83%) Query: 15 DPQQLTDKILLLNLYITQGLTLFIGLIWILLQKRNPIHILNFPDSAQFVYWALGLAAIML 74 + QL D++LL+NLY+TQ LTL +GLIWIL Q RNP + FP +FVYW LGLAA ML Sbjct: 12 EAHQLNDRLLLINLYLTQALTLIVGLIWILFQNRNPFGLFVFPKEIEFVYWGLGLAAAML 71 Query: 75 IVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYW 134 VDF+L+ V EDSMDDGGINE+LF KRP+WHI VIA IVS+CEELLFRGA+QH FG YW Sbjct: 72 AVDFVLSRFVSEDSMDDGGINEMLFRKRPVWHIFVIALIVSICEELLFRGAIQHAFGPYW 131 Query: 135 TSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIRYR 194 TSILFA+IHVRYL+HW+PTGWVFLSSYGLGY+YI +GT+WAPILCHF+ID SG++IR+R Sbjct: 132 TSILFALIHVRYLKHWLPTGWVFLSSYGLGYVYIQTGTIWAPILCHFLIDFISGMLIRFR 191 Query: 195 RAS 197 R Sbjct: 192 RKE 194 >B1DJ85.1 B1DJ85_9BACL Abortive infection protein Length = 200 Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 108/181 (59%), Positives = 143/181 (79%) Query: 17 QQLTDKILLLNLYITQGLTLFIGLIWILLQKRNPIHILNFPDSAQFVYWALGLAAIMLIV 76 ++ D++LL+NLY+TQ +T+ IGL+W L Q+ NP +L FPD+ F++W LGL A ++ V Sbjct: 17 DEIDDRMLLVNLYVTQAITIIIGLVWALFQRSNPFLLLRFPDNLDFLWWGLGLGAAVIAV 76 Query: 77 DFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYWTS 136 D L++ VPE++ DDGGINE +F RP+WHI VI+ +V++CEELLFRGAVQH+FG YWTS Sbjct: 77 DLLISRWVPEEATDDGGINERIFKNRPVWHIAVISLVVAICEELLFRGAVQHSFGPYWTS 136 Query: 137 ILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIRYRRA 196 I+FA IHVRYL+HWIPTG VF SYGLG+IYI SG LWAPI+ HF++D GL+IR+RR Sbjct: 137 IIFAAIHVRYLKHWIPTGLVFSISYGLGWIYIQSGNLWAPIVAHFLVDFIMGLIIRFRRE 196 Query: 197 S 197 Sbjct: 197 Q 197 >B7GHL4.1 B7GHL4_ANOFW Predicted metal-dependent membrane protease, CAAX family Length = 196 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 103/182 (56%), Gaps = 1/182 (0%) Query: 17 QQLTDKILLLNLYITQGLTLFIGLIW-ILLQKRNPIHILNFPDSAQFVYWALGLAAIMLI 75 Q+ D+ ++ +LY+TQ L I LI + L + D + + + G AA++L Sbjct: 10 SQMNDEEIVYHLYVTQALIFLIALILSVFLFTPATFFSMWQWDIREILLYGSGCAALVLF 69 Query: 76 VDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYWT 135 VDFLL PE DDGGINE LF R + HI ++ +++ CEELLFRG +Q GL++ Sbjct: 70 VDFLLIQYAPEQWYDDGGINEKLFRSRSVPHIFIMTTVIAFCEELLFRGVIQTHVGLFFA 129 Query: 136 SILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIRYRR 195 SI+FA++H+RY R W+ V S+ +G IY + LW I HF+ID L IRYR Sbjct: 130 SIIFALLHIRYWRKWLLLLAVVSLSFWIGLIYEWTSNLWVTIFAHFLIDFILALHIRYRT 189 Query: 196 AS 197 Sbjct: 190 KE 191 >C5D3I6.1 C5D3I6_9BACI Abortive infection protein Length = 201 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 3/178 (1%) Query: 17 QQLTDKILLLNLYITQGLTLFIGLI--WILLQKRNPIHILNFPDSAQFVYWALGLAAIML 74 + + D+ +L++LY TQ L + + I + L I +F D A + + G A I+L Sbjct: 9 RMMDDREVLIHLYFTQLLLIVVSAIIGFFLFDLSTFQKIWHF-DVATVLKYGGGSAMIVL 67 Query: 75 IVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYW 134 +DFLL +PE DDGGINE +F R + HI + +++ EELLFRG +Q FGL+ Sbjct: 68 AIDFLLMRYLPEHWYDDGGINEKIFQNRSIPHIFFLCLLIAFSEELLFRGVIQTHFGLFI 127 Query: 135 TSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIR 192 SI+FA++HVRYL W G V L S+ LGYIY + +LW I HF+ID + IR Sbjct: 128 ASIVFALLHVRYLEKWFLFGMVVLLSFFLGYIYQRTNSLWVTIFAHFLIDFILAIDIR 185 >Q2B648.1 Q2B648_9BACI Putative uncharacterized protein Length = 208 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/183 (42%), Positives = 107/183 (58%), Gaps = 2/183 (1%) Query: 17 QQLTDKILLLNLYITQGLTLFIGLI--WILLQKRNPIHILNFPDSAQFVYWALGLAAIML 74 ++L+DK LL +LY TQ L L I I +IL + L F + +Y G ++ Sbjct: 10 KELSDKDLLFHLYATQLLLLAISAILGFILFNDFSSFFDLFFWEDLNILYIGAGAGIAVV 69 Query: 75 IVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYW 134 + D LL IVP DDGG+NE +F R HI VIAAIV+ CEELLFRG +Q FGL Sbjct: 70 LADLLLMKIVPASYYDDGGLNERIFRNRNPLHIAVIAAIVAFCEELLFRGVIQTHFGLLV 129 Query: 135 TSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIRYR 194 +SI+FA +H RYL +W + + S+ +G IY+ +G L I+ HF+ID G+ IRYR Sbjct: 130 SSIIFAAVHYRYLFNWFLFVNIIVLSFLIGIIYLKTGNLAVTIVMHFLIDFLLGISIRYR 189 Query: 195 RAS 197 + Sbjct: 190 KQD 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.332 0.148 0.490 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,174,920,608 Number of extensions: 49573321 Number of successful extensions: 129427 Number of sequences better than 1.0e-05: 122 Number of HSP's gapped: 129448 Number of HSP's successfully gapped: 122 Length of query: 197 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 68 Effective length of database: 1,845,385,268 Effective search space: 125486198224 Effective search space used: 125486198224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 127 (53.5 bits)