BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0011.p (368 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I698.1 A3I698_9BACI Sensor protein EC=2.7.13.3 334 8e-90 Q5WBT5.1 Q5WBT5_BACSK Sensor protein EC=2.7.13.3 318 4e-85 B3KHB4.1 B3KHB4_9BACI Sensor protein EC=2.7.13.3 317 2e-84 C3BIU0.1 C3BIU0_9BACI Putative uncharacterized protein 305 4e-81 C3AK74.1 C3AK74_BACMY Putative uncharacterized protein 304 8e-81 >A3I698.1 A3I698_9BACI Sensor protein EC=2.7.13.3 Length = 348 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 157/347 (45%), Positives = 226/347 (65%), Gaps = 1/347 (0%) Query: 19 MLGLGITMMISVEVLFPQLGLLEGQEHYDLYILAVFGLNITACSVLFGWYFGSPLRFMMS 78 ML GI ++I +E + P + +E+ +L + +FG + C +FGWYFG PL F+MS Sbjct: 1 MLLSGICIVIGLECILPLIKKSVSEEYENLIVAWIFGFSTVVCIAVFGWYFGGPLGFIMS 60 Query: 79 WIASLSGRNFEPPPALQGIFKRNGKLKFRYRLYGELIVHIESLSAGLKQAELERRKLEDN 138 WI LS N+ P L I+ R GKL+ RY LY E++ H++SLS LK AE ER K+E Sbjct: 61 WIHQLSQENYTQPAGLSKIYARKGKLRMRYMLYQEVLQHLQSLSEKLKAAETEREKVEQA 120 Query: 139 KKDWVAGISHDLKTPLTYVTGYSALLLNEEYSWNADEQRTFLQEIHAKGRHIEELISDIN 198 K++W+AGISHDLKTPLTY+TGYS LLLN++Y W+ +E R+F+QEI KG+H+EELI D++ Sbjct: 121 KQEWIAGISHDLKTPLTYITGYSTLLLNDQYEWSKEEARSFIQEIADKGKHMEELIQDLS 180 Query: 199 LSFQMNEDHASLPMQLGTVELIGFLQRLTADVGNDPRAVSHLLSLDAETGPLELVADEKL 258 L Q+N LP+ +++ F +R+ A + N+P+ + L +T + D K Sbjct: 181 LVIQLNSTDGQLPLHKSNQDIVEFTKRVVATISNNPQGKDYKLHFKTDTPVINTEFDIKF 240 Query: 259 LYRALQNVLMNAVLHTPAGTAIHVTVRREGDESVNITVSDNGTGMDEDTLNNLFQKYYRG 318 + R LQNVLMN+++H PA T I+ + + +E V+I + DNG GM L N+F++YYRG Sbjct: 241 MQRILQNVLMNSIIHNPANTNIYTQI-FDNNEHVDIHIVDNGIGMSPHMLENIFKQYYRG 299 Query: 319 AKNGSPNLGTGLGMAIVKSLILAHGGFLTVESEVSKGTAFHISLPVR 365 S GTGLGMAIV +L+ AH G ++++SE SKGT F I+LP + Sbjct: 300 TTTDSSTEGTGLGMAIVHNLVQAHKGTISIQSEPSKGTTFMITLPKK 346 >Q5WBT5.1 Q5WBT5_BACSK Sensor protein EC=2.7.13.3 Length = 372 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 159/365 (43%), Positives = 239/365 (65%), Gaps = 1/365 (0%) Query: 1 MKTGLRFSVHFVIGLIAWMLGLGITMMISVEVLFPQLGLLEGQEHYDLYILAVFGLNITA 60 M RF++HF +GL W+LG G++++I EVL P ++ G+ L + ++F L+ Sbjct: 1 MGIKTRFTLHFALGLTLWLLGTGLSLVILFEVLLPLFDVVVGENTEGLLVGSIFALSTLV 60 Query: 61 CSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGIFKRNGKLKFRYRLYGELIVHIES 120 C LFGWYFG P+ F+M WI LS N++ PP L+ I+ R L+ RY LY E++ ++ Sbjct: 61 CIGLFGWYFGGPIAFIMRWIHQLSQGNYKQPPGLRKIYTRKETLRMRYLLYKEVLHSLQL 120 Query: 121 LSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLNEEYSWNADEQRTFL 180 L+ L+ E+ER+K+E K++W+AGISHDLKTPLTY+TGYS LLL +Y W+ +E R+F Sbjct: 121 LAEQLQANEVERKKIEQAKQEWIAGISHDLKTPLTYITGYSTLLLTNQYEWSTEEARSFT 180 Query: 181 QEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRLTADVGNDPRAVSHL 240 QEI+ KG+H+EELI D+NL ++N+ P+ + +L+ F +R+ AD+ N P+AV + Sbjct: 181 QEIYDKGKHMEELIQDLNLVLKLNDGVHLFPINTTSQDLVEFTKRVVADISNSPQAVDYR 240 Query: 241 LSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRREGDESVNITVSDNG 300 L +++ D+K + R LQN+LMN+++H P I++ + + +E I ++DNG Sbjct: 241 LHFKTNKPRIDVDFDDKFMQRILQNILMNSIIHNPEPVDIYIEL-FDYNEQARIHITDNG 299 Query: 301 TGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFLTVESEVSKGTAFHI 360 GM + NLFQ+YYRGA S + GTGLGMAIV +L+ AH G ++VESE SKGT+F I Sbjct: 300 IGMPTHMMENLFQQYYRGATTDSASEGTGLGMAIVYNLVRAHHGTISVESEPSKGTSFDI 359 Query: 361 SLPVR 365 P + Sbjct: 360 HFPKK 364 >B3KHB4.1 B3KHB4_9BACI Sensor protein EC=2.7.13.3 Length = 369 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 159/363 (43%), Positives = 240/363 (66%), Gaps = 1/363 (0%) Query: 1 MKTGLRFSVHFVIGLIAWMLGLGITMMISVEVLFPQLGLLEGQEHYDLYILAVFGLNITA 60 M+ RF++H +GLI W+LG G+ ++I +E + P LG+ ++ L + +FG + Sbjct: 1 MRIKTRFTIHLALGLILWLLGTGMLLVILLEGILPMLGIHITVDNEGLIVGVIFGASTLL 60 Query: 61 CSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGIFKRNGKLKFRYRLYGELIVHIES 120 C LFGWYFG P+ F+M+WI LS +++ P L I R GKL+ RY LY E++ H++S Sbjct: 61 CIALFGWYFGGPIGFIMTWIQQLSKDDYKQPAELSKIVTRKGKLRMRYSLYQEVLQHLQS 120 Query: 121 LSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLNEEYSWNADEQRTFL 180 L + L+ E ER ++E K++W+AGISHDLKTPLTY+ GYSALLLNE+Y W+ +E +F+ Sbjct: 121 LGSVLQANEAERTQIEQAKQEWIAGISHDLKTPLTYIKGYSALLLNEQYEWSKEEAISFI 180 Query: 181 QEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRLTADVGNDPRAVSHL 240 +E+ KG+H+EELI D++L Q+N +LP+ +++ F +R+ AD+ N+P+A ++L Sbjct: 181 REMDDKGKHMEELIQDLSLVTQLNRADGALPLLKANQDIVEFTKRVVADISNNPQASNYL 240 Query: 241 LSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRREGDESVNITVSDNG 300 L ++ + + D K + R LQN+++N+++H P T I V + G E I ++DNG Sbjct: 241 LHFQTDSSAMHVDFDAKYMQRILQNIMINSIIHNPEFTEIFVRITDAG-EFAAIRITDNG 299 Query: 301 TGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFLTVESEVSKGTAFHI 360 GM DT+ +LFQ+YYRG + + GTGLGMAIV LI AH G +TVES+ S+GT F I Sbjct: 300 IGMPADTVAHLFQQYYRGTTTDAASEGTGLGMAIVYKLIQAHDGTITVESKPSQGTTFTI 359 Query: 361 SLP 363 LP Sbjct: 360 RLP 362 >C3BIU0.1 C3BIU0_9BACI Putative uncharacterized protein Length = 342 Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 153/347 (44%), Positives = 233/347 (67%), Gaps = 10/347 (2%) Query: 22 LGITMMISVEVLFPQLGLLEGQEHYDLYILAVFGLNITAC---SVLFGWYFGSPLRFMMS 78 +GI M I +E + P +G+ +E+ D L VF L + ++L+GW+ G PL ++S Sbjct: 1 MGIFMAIFMEGILPLIGI--SKENKDTEALIVFCLFVCTLILGAILYGWHIGKPLFRIIS 58 Query: 79 WIASLSGRNFEPPPALQGIF-KRNGKLKFRYRLYGELIVHIESLSAGLKQAELERRKLED 137 WI L+ ++ P + + ++ K+ GKLK YRLY ++ ++IE L+ L++ E ER +LE Sbjct: 59 WINHLAEGSYVTPESTKQMYNKKTGKLKGPYRLYKDVFLNIEHLTNRLREIENEREQLEK 118 Query: 138 NKKDWVAGISHDLKTPLTYVTGYSALLLNEEYSWNADEQRTFLQEIHAKGRHIEELISDI 197 K++W+AGISHDLKTPLTY+TGYSAL+L+ ++ W+ +E+ FLQEI KG H++ELI D+ Sbjct: 119 MKREWMAGISHDLKTPLTYITGYSALMLSPDHEWSEEEKEKFLQEIQQKGDHMKELIEDL 178 Query: 198 NLSFQMNEDHASLPMQLGTVELIGFLQRLTADVGNDPRAVSHLLSLDAETGPLELVADEK 257 NLSF++++ + +P++ + +I F +R+ AD+ NDPR+ + S A+ + + D K Sbjct: 179 NLSFRLHD--SQIPLKKEEINIIEFTRRMIADMTNDPRSEHYHFSFHADKTNIIIPIDTK 236 Query: 258 LLYRALQNVLMNAVLHTPAGTAIHVTVRREGDESVNITVSDNGTGMDEDTLNNLFQKYYR 317 LL+R+LQN+ MNAVLH P T IH ++ E ++V+I + D G GMDE T+ NLF++YYR Sbjct: 237 LLHRSLQNLFMNAVLHNPVETKIHTSILLE--DTVHIIIEDTGVGMDEMTVQNLFKQYYR 294 Query: 318 GAKNGSPNLGTGLGMAIVKSLILAHGGFLTVESEVSKGTAFHISLPV 364 G N GTGLGMAI + +I AHGG + V+SE+ KGT HI+LP Sbjct: 295 GTTTNVSNEGTGLGMAIAQKIITAHGGTIQVDSEIEKGTTIHITLPT 341 >C3AK74.1 C3AK74_BACMY Putative uncharacterized protein Length = 342 Score = 304 bits (779), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 152/347 (43%), Positives = 233/347 (67%), Gaps = 10/347 (2%) Query: 22 LGITMMISVEVLFPQLGLLEGQEHYDLYILAVFGLNITAC---SVLFGWYFGSPLRFMMS 78 +GI M I +E + P +G+ +E+ D L VF L + ++L+GW+ G PL ++S Sbjct: 1 MGIFMAIFMEGILPLIGI--SKENKDTEALIVFCLFVCTLILGAILYGWHIGKPLFRIIS 58 Query: 79 WIASLSGRNFEPPPALQGIF-KRNGKLKFRYRLYGELIVHIESLSAGLKQAELERRKLED 137 WI L+ ++ P +++ ++ K+ GKLK YRLY ++ ++IE L+ L++ E ER +LE Sbjct: 59 WINHLAEGSYVTPESMKQMYNKKTGKLKGPYRLYKDVFLNIEHLTNRLREIENEREQLEK 118 Query: 138 NKKDWVAGISHDLKTPLTYVTGYSALLLNEEYSWNADEQRTFLQEIHAKGRHIEELISDI 197 K++W+AGISHDLKTPLTY+TGYSAL+L+ ++ W+ +E+ FLQEI KG H++ELI D+ Sbjct: 119 MKREWMAGISHDLKTPLTYITGYSALMLSPDHEWSEEEKEKFLQEIQQKGDHMKELIEDL 178 Query: 198 NLSFQMNEDHASLPMQLGTVELIGFLQRLTADVGNDPRAVSHLLSLDAETGPLELVADEK 257 NLSF++++ + +P++ + +I F +R+ AD+ NDPR+ + S A+ + + D K Sbjct: 179 NLSFRLHD--SQIPLKKEEINIIEFTRRMIADMTNDPRSEHYHFSFHADKTNIIIPIDTK 236 Query: 258 LLYRALQNVLMNAVLHTPAGTAIHVTVRREGDESVNITVSDNGTGMDEDTLNNLFQKYYR 317 LL+R+LQN+ MNAVLH P T IH ++ + ++V+I + D G GMDE T+ NLF++YYR Sbjct: 237 LLHRSLQNLFMNAVLHNPVETKIHTSILLK--DTVHIIIEDTGVGMDEMTVQNLFKQYYR 294 Query: 318 GAKNGSPNLGTGLGMAIVKSLILAHGGFLTVESEVSKGTAFHISLPV 364 G N GTGLGMAI + +I AHGG + V SE+ KGT HI+LP Sbjct: 295 GTTTNVSNEGTGLGMAIAQKIITAHGGTIQVNSEIEKGTTIHITLPT 341 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,257,774,109 Number of extensions: 97889722 Number of successful extensions: 367221 Number of sequences better than 1.0e-05: 26709 Number of HSP's gapped: 330643 Number of HSP's successfully gapped: 26782 Length of query: 368 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 231 Effective length of database: 1,770,017,148 Effective search space: 408873961188 Effective search space used: 408873961188 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)