BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0010.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I697.1 A3I697_9BACI Two-component response regulator 316 1e-84 Q5WBT6.1 Q5WBT6_BACSK Two-component response regulator 304 4e-81 B3KHB5.1 B3KHB5_9BACI Response regulator receiver 297 7e-79 C2W6L0.1 C2W6L0_BACCE Two-component response regulator 290 8e-77 C3BIU1.1 C3BIU1_9BACI Two-component response regulator 283 1e-74 >A3I697.1 A3I697_9BACI Two-component response regulator Length = 241 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 148/241 (61%), Positives = 193/241 (80%), Gaps = 5/241 (2%) Query: 7 NAEKILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDA 66 + EKIL+VDDE GIL LLEITL+KE + NI + +TG+ L +K + YD+ILLD+ML D Sbjct: 3 STEKILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDI 62 Query: 67 NGFELCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRR 126 +GFELC EIRKHT+TPI F+++ ++DFDKLTGLGIGGDDYITKPFNPLEV+ARIK + RR Sbjct: 63 SGFELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRR 122 Query: 127 QSLTQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNR 186 Q + ++S + ++++G F L P A+LIVN + V+CTAKELELL FFC+NPNR Sbjct: 123 QKMYESSHQQQ-----SSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNR 177 Query: 187 IYTTSQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVPPVKE 246 I+TTSQ+YE VWG+ YG EKTVTIHISK+RKKL D+ + P++I+NLRGIGYKF+PP ++ Sbjct: 178 IFTTSQLYEFVWGNDVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPPKED 237 Query: 247 A 247 + Sbjct: 238 S 238 >Q5WBT6.1 Q5WBT6_BACSK Two-component response regulator Length = 238 Score = 304 bits (779), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 148/234 (63%), Positives = 183/234 (78%), Gaps = 7/234 (2%) Query: 10 KILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGF 69 KIL+VDDE GI+ LLEITL+KE + +I TTG++AL K T++LILLD+ML D +GF Sbjct: 5 KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPDISGF 64 Query: 70 ELCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSL 129 ELC EIR++TDTPI F++S A+DFDKLTGLGIGGDDYITKPFNPLEVIARIKA+ RRQ + Sbjct: 65 ELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQKM 124 Query: 130 TQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYT 189 + S Y+YG F P A L+V ++VECTAKELELL FFC NPNRI+T Sbjct: 125 YERSEK-------KPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFT 177 Query: 190 TSQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVPP 243 T+Q+YE VWG+ +G EKTVTIHISK+RKKL D+ + P++I+NLRGIGYKF+PP Sbjct: 178 TAQLYERVWGNDVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKFIPP 231 >B3KHB5.1 B3KHB5_9BACI Response regulator receiver Length = 239 Score = 297 bits (760), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 143/233 (61%), Positives = 181/233 (77%), Gaps = 6/233 (2%) Query: 11 ILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGFE 70 IL VDDE GIL LLEITL+KE + +I + ++G+ AL +K +YD+ILLD+ML D +GFE Sbjct: 6 ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLSGFE 65 Query: 71 LCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSLT 130 LC EIRKHT+ PI FI++ ++DFDKLTGLGIGGDDYITKPFNPLEVIARIKA+ RRQ + Sbjct: 66 LCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQKIM 125 Query: 131 QASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYTT 190 + E N Y+YG P A+LIV G+ V+CTAKELELL FF ++PN I+TT Sbjct: 126 EN------ELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTT 179 Query: 191 SQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVPP 243 +Q+YELVWG+ +G EKTVTIHISK+RKK+ D+ + P +I+NLRGIGYKF+PP Sbjct: 180 AQLYELVWGNDVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKFIPP 232 >C2W6L0.1 C2W6L0_BACCE Two-component response regulator Length = 250 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 139/239 (58%), Positives = 176/239 (73%), Gaps = 5/239 (2%) Query: 8 AEKILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDAN 67 EKILLVDDE+GIL +L +TLKKE + +I++ G + L IKNH +D+ILLDVML D + Sbjct: 16 TEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDID 75 Query: 68 GFELCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQ 127 GFELCR+IR +T+TPI F+T+ +SD DKLTGLGIGGDDYITKPFNPLEV ARI RRQ Sbjct: 76 GFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQ 135 Query: 128 SLTQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRI 187 +TQ ++G ++ F L P++ + VN E V CTAKELELL+F C +PNRI Sbjct: 136 HMTQEPNNGE-----KLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRI 190 Query: 188 YTTSQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVPPVKE 246 +T Q+YE VWG G +KTV +HISK+RKK+++NPK P I+NLRGIGYKF+P KE Sbjct: 191 FTAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >C3BIU1.1 C3BIU1_9BACI Two-component response regulator Length = 250 Score = 283 bits (723), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 176/239 (73%), Gaps = 5/239 (2%) Query: 8 AEKILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDAN 67 E ILLVDDE+GIL +L +TLKKE + ++++ G + L +KNH +D+ILLDVML D + Sbjct: 14 TENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPDID 73 Query: 68 GFELCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQ 127 GFELCR+IR +T+TPI F+T+ +SD DKLTGLGIGGDDYITKPFNPLEV ARI R Q Sbjct: 74 GFELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRGQ 133 Query: 128 SLTQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRI 187 S+ N A + ++ F L P++ + VNG+SV CTAKELELL+F C +PNRI Sbjct: 134 SMLL-----NNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRI 188 Query: 188 YTTSQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVPPVKE 246 +T Q+YE VWG G +KTV +HISK+RKK++++PK+P I+NLRGIGYKF+P KE Sbjct: 189 FTAEQLYEQVWGLTSMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKFIPHTKE 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,555,338,402 Number of extensions: 64426693 Number of successful extensions: 222024 Number of sequences better than 1.0e-05: 22458 Number of HSP's gapped: 198161 Number of HSP's successfully gapped: 22499 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)